National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 1                             1   1    
C   39                                        
D   21     1                                  
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12               1                        
K   24                                        
L   24                   2                    
M   12               1                        
N   21                                        
P   24                                        
Q   18                                        
R   6                             1          
S   18                                        
T   39               2                        
V   27                     1                  
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Peru 13026 C 526 526
1 Peru 13027 T 526 526
2 Peru 13028 G 528 528
3 Peru 13029 G 528 528
4 Peru 13030 T 528 528
5 Peru 13031 A 528 528
6 Peru 13032 A 528 528
7 Peru 13033 T 528 528
8 Peru 13034 G 528 528
9 Peru 13035 C 528 528
10 Peru 13036 A 528 528
11 Peru 13037 A 528 528
12 Peru 13038 C 528 528
13 Peru 13039 A 528 528
14 Peru 13040 G 528 528
15 Peru 13041 A 528 528
16 Peru 13042 A 528 528
17 Peru 13043 G A 528 527 Val4260Met
18 Peru 13044 T 528 528
19 Peru 13045 G 528 528
20 Peru 13046 C 528 528
21 Peru 13047 C 528 528
22 Peru 13048 T 528 528
23 Peru 13049 G 528 528
24 Peru 13050 C 528 528
25 Peru 13051 C 528 528
26 Peru 13052 A 528 528
27 Peru 13053 A 528 528
28 Peru 13054 T 528 528
29 Peru 13055 T 528 528
30 Peru 13056 C 528 528
31 Peru 13057 A 528 528
32 Peru 13058 A 528 528
33 Peru 13059 C 528 528
34 Peru 13060 T 528 528
35 Peru 13061 G 528 528
36 Peru 13062 T 528 528
37 Peru 13063 A 528 528
38 Peru 13064 T 528 528
39 Peru 13065 T 528 528
40 Peru 13066 A 528 528
41 Peru 13067 T 528 528
42 Peru 13068 C 528 528
43 Peru 13069 T 528 528
44 Peru 13070 T 528 528
45 Peru 13071 T 528 528
46 Peru 13072 C 528 528
47 Peru 13073 T 528 528
48 Peru 13074 G 528 528
49 Peru 13075 T 528 528
50 Peru 13076 G 528 528
51 Peru 13077 C 528 528
52 Peru 13078 T 528 528
53 Peru 13079 T 528 528
54 Peru 13080 T 528 528
55 Peru 13081 T 528 528
56 Peru 13082 G T 528 527 Ala4273Ser
57 Peru 13083 C 528 528
58 Peru 13084 T 528 528
59 Peru 13085 G 528 528
60 Peru 13086 T 528 528
61 Peru 13087 A 528 528
62 Peru 13088 G 528 528
63 Peru 13089 A 528 528
64 Peru 13090 T 528 528
65 Peru 13091 G 528 528
66 Peru 13092 C 528 528
67 Peru 13093 T 528 528
68 Peru 13094 G 528 528
69 Peru 13095 C 528 528
70 Peru 13096 T 528 528
71 Peru 13097 A 528 528
72 Peru 13098 A 528 528
73 Peru 13099 A 528 528
74 Peru 13100 G 528 528
75 Peru 13101 C 528 528
76 Peru 13102 T 528 528
77 Peru 13103 T 528 528
78 Peru 13104 A 528 528
79 Peru 13105 C 528 528
80 Peru 13106 A 528 528
81 Peru 13107 A 528 528
82 Peru 13108 A 528 528
83 Peru 13109 G 528 528
84 Peru 13110 A 528 528
85 Peru 13111 T 528 528
86 Peru 13112 T 528 528
87 Peru 13113 A 528 528
88 Peru 13114 T 528 528
89 Peru 13115 C 528 528
90 Peru 13116 T 528 528
91 Peru 13117 A 528 528
92 Peru 13118 G 528 528
93 Peru 13119 C 528 528
94 Peru 13120 T 528 528
95 Peru 13121 A 528 528
96 Peru 13122 G 528 528
97 Peru 13123 T 528 528
98 Peru 13124 G 528 528
99 Peru 13125 G 528 528
100 Peru 13126 G 528 528
101 Peru 13127 G 528 528
102 Peru 13128 G 528 528
103 Peru 13129 A 528 527
104 Peru 13130 C 528 528
105 Peru 13131 A 528 528
106 Peru 13132 A 528 528
107 Peru 13133 C 528 528
108 Peru 13134 C 528 528
109 Peru 13135 A 528 528
110 Peru 13136 A 528 528
111 Peru 13137 T 528 528
112 Peru 13138 C T 528 525 Ile4291Ile
113 Peru 13139 A 528 528
114 Peru 13140 C 528 528
115 Peru 13141 T 528 528
116 Peru 13142 A 528 528
117 Peru 13143 A 528 528
118 Peru 13144 T 528 528
119 Peru 13145 T 528 528
120 Peru 13146 G 528 528
121 Peru 13147 T 528 528
122 Peru 13148 G 528 528
123 Peru 13149 T 528 528
124 Peru 13150 T 528 528
125 Peru 13151 A 528 528
126 Peru 13152 A 528 528
127 Peru 13153 G 528 528
128 Peru 13154 A 528 528
129 Peru 13155 T 528 528
130 Peru 13156 G 528 528
131 Peru 13157 T 528 528
132 Peru 13158 T 528 528
133 Peru 13159 G 528 528
134 Peru 13160 T 528 528
135 Peru 13161 G 528 528
136 Peru 13162 T 528 528
137 Peru 13163 A 528 528
138 Peru 13164 C 528 528
139 Peru 13165 A 528 528
140 Peru 13166 C 528 528
141 Peru 13167 A 528 528
142 Peru 13168 C 528 528
143 Peru 13169 A 528 528
144 Peru 13170 C 528 528
145 Peru 13171 T 528 528
146 Peru 13172 G 528 528
147 Peru 13173 G 528 528
148 Peru 13174 T 528 528
149 Peru 13175 A 528 528
150 Peru 13176 C 528 528
151 Peru 13177 T 528 528
152 Peru 13178 G 528 528
153 Peru 13179 G 528 528
154 Peru 13180 T 528 528
155 Peru 13181 C 528 528
156 Peru 13182 A 528 528
157 Peru 13183 G 528 528
158 Peru 13184 G 528 528
159 Peru 13185 C 528 528
160 Peru 13186 A 528 528
161 Peru 13187 A 528 528
162 Peru 13188 T 528 528
163 Peru 13189 A 528 528
164 Peru 13190 A 528 528
165 Peru 13191 C 528 528
166 Peru 13192 A 528 528
167 Peru 13193 G 528 528
168 Peru 13194 T 528 528
169 Peru 13195 T 528 528
170 Peru 13196 A 528 528
171 Peru 13197 C 528 528
172 Peru 13198 A 528 528
173 Peru 13199 C 528 528
174 Peru 13200 C 528 528
175 Peru 13201 G 528 528
176 Peru 13202 G 528 528
177 Peru 13203 A 528 528
178 Peru 13204 A 528 528
179 Peru 13205 G 528 528
180 Peru 13206 C 528 528
181 Peru 13207 C 528 528
182 Peru 13208 A 528 528
183 Peru 13209 A 528 528
184 Peru 13210 T 528 528
185 Peru 13211 A 528 528
186 Peru 13212 T 528 528
187 Peru 13213 G A 528 526 Met4316Ile
188 Peru 13214 G 528 528
189 Peru 13215 A 528 528
190 Peru 13216 T 528 528
191 Peru 13217 C 528 528
192 Peru 13218 A 528 528
193 Peru 13219 A 528 528
194 Peru 13220 G 528 528
195 Peru 13221 A 528 528
196 Peru 13222 A 528 528
197 Peru 13223 T 528 528
198 Peru 13224 C 528 528
199 Peru 13225 C 528 528
200 Peru 13226 T 528 528
201 Peru 13227 T 528 528
202 Peru 13228 T 528 528
203 Peru 13229 G 528 528
204 Peru 13230 G 528 528
205 Peru 13231 T 528 528
206 Peru 13232 G 528 528
207 Peru 13233 G 528 528
208 Peru 13234 T 528 528
209 Peru 13235 G 528 528
210 Peru 13236 C 528 528
211 Peru 13237 A 528 528
212 Peru 13238 T 528 528
213 Peru 13239 C 528 528
214 Peru 13240 G 528 528
215 Peru 13241 T 528 528
216 Peru 13242 G 528 528
217 Peru 13243 T 528 528
218 Peru 13244 T 528 528
219 Peru 13245 G 528 528
220 Peru 13246 T 528 528
221 Peru 13247 C T 528 526 Leu4328Leu
222 Peru 13248 T 528 528
223 Peru 13249 G T 528 527 Leu4328Leu
224 Peru 13250 T 528 528
225 Peru 13251 A 528 528
226 Peru 13252 C 528 528
227 Peru 13253 T 528 528
228 Peru 13254 G 528 528
229 Peru 13255 C 528 528
230 Peru 13256 C 528 528
231 Peru 13257 G 528 528
232 Peru 13258 T 528 528
233 Peru 13259 T 528 528
234 Peru 13260 G 528 528
235 Peru 13261 C 528 528
236 Peru 13262 C 528 528
237 Peru 13263 A 528 528
238 Peru 13264 C 528 528
239 Peru 13265 A 528 528
240 Peru 13266 T 528 528
241 Peru 13267 A 528 528
242 Peru 13268 G 528 528
243 Peru 13269 A 528 528
244 Peru 13270 T 528 528
245 Peru 13271 C 528 528
246 Peru 13272 A 528 528
247 Peru 13273 T 528 528
248 Peru 13274 C 528 528
249 Peru 13275 C 528 528
250 Peru 13276 A 528 528
251 Peru 13277 A 528 528
252 Peru 13278 A 528 528
253 Peru 13279 T 528 528
254 Peru 13280 C 528 528
255 Peru 13281 C 528 528
256 Peru 13282 T 528 528
257 Peru 13283 A 528 528
258 Peru 13284 A 528 528
259 Peru 13285 A 528 528
260 Peru 13286 G 528 528
261 Peru 13287 G 528 528
262 Peru 13288 A 528 528
263 Peru 13289 T 528 528
264 Peru 13290 T 528 528
265 Peru 13291 T 528 528
266 Peru 13292 T 528 528
267 Peru 13293 G 528 528
268 Peru 13294 T 528 528
269 Peru 13295 G 528 528
270 Peru 13296 A 528 528
271 Peru 13297 C T 528 527 Asp4344Asp
272 Peru 13298 T 528 528
273 Peru 13299 T 528 528
274 Peru 13300 A 528 528
275 Peru 13301 A 528 528
276 Peru 13302 A 528 528
277 Peru 13303 A 528 528
278 Peru 13304 G 528 528
279 Peru 13305 G 528 528
280 Peru 13306 T 528 528
281 Peru 13307 A 528 528
282 Peru 13308 A 528 528
283 Peru 13309 G 528 528
284 Peru 13310 T 528 528
285 Peru 13311 A 528 528
286 Peru 13312 T 528 528
287 Peru 13313 G 528 528
288 Peru 13314 T 528 528
289 Peru 13315 A 528 528
290 Peru 13316 C 528 528
291 Peru 13317 A 528 528
292 Peru 13318 A 528 528
293 Peru 13319 A 528 528
294 Peru 13320 T 528 528
295 Peru 13321 A 528 528
296 Peru 13322 C 528 528
297 Peru 13323 C 528 528
298 Peru 13324 T 528 528
299 Peru 13325 A 528 528
300 Peru 13326 C T 528 523 Thr4354Ile
301 Peru 13327 A 528 528
302 Peru 13328 A 528 528
303 Peru 13329 C 528 528
304 Peru 13330 T 528 528
305 Peru 13331 T 528 528
306 Peru 13332 G 528 528
307 Peru 13333 T 528 528
308 Peru 13334 G 528 528
309 Peru 13335 C T 528 520 Ala4357Val
310 Peru 13336 T C 528 527 Ala4357Ala
311 Peru 13337 A 528 528
312 Peru 13338 A 528 528
313 Peru 13339 T 528 528
314 Peru 13340 G 528 528
315 Peru 13341 A 528 528
316 Peru 13342 C 528 528
317 Peru 13343 C 528 528
318 Peru 13344 C 528 528
319 Peru 13345 T 528 528
320 Peru 13346 G 528 528
321 Peru 13347 T 528 528
322 Peru 13348 G 528 528
323 Peru 13349 G 528 528
324 Peru 13350 G 528 528
325 Peru 13351 T 528 528
326 Peru 13352 T 528 528
327 Peru 13353 T 528 528
328 Peru 13354 T 528 528
329 Peru 13355 A 528 528
330 Peru 13356 C T 528 526 Thr4364Ile
331 Peru 13357 A 528 528
332 Peru 13358 C 528 528
333 Peru 13359 T 528 528
334 Peru 13360 T 528 528
335 Peru 13361 A 528 528
336 Peru 13362 A 528 528
337 Peru 13363 A 528 528
338 Peru 13364 A 528 528
339 Peru 13365 A 528 528
340 Peru 13366 C 528 528
341 Peru 13367 A 528 528
342 Peru 13368 C 528 528
343 Peru 13369 A 528 528
344 Peru 13370 G 528 528
345 Peru 13371 T 528 528
346 Peru 13372 C 528 528
347 Peru 13373 T 528 528
348 Peru 13374 G 528 528
349 Peru 13375 T 528 528
350 Peru 13376 A 528 528
351 Peru 13377 C 528 528
352 Peru 13378 C 528 528
353 Peru 13379 G 528 528
354 Peru 13380 T 528 528
355 Peru 13381 C 528 528
356 Peru 13382 T 528 528
357 Peru 13383 G 528 528
358 Peru 13384 C 528 528
359 Peru 13385 G 528 528
360 Peru 13386 G 528 528
361 Peru 13387 T 528 528
362 Peru 13388 A 528 528
363 Peru 13389 T 528 528
364 Peru 13390 G 528 528
365 Peru 13391 T 528 528
366 Peru 13392 G 528 528
367 Peru 13393 G 528 528
368 Peru 13394 A 528 528
369 Peru 13395 A 528 528
370 Peru 13396 A 528 527
371 Peru 13397 G 528 528
372 Peru 13398 G 528 528
373 Peru 13399 T 528 528
374 Peru 13400 T 528 528
375 Peru 13401 A 528 528
376 Peru 13402 T 528 528
377 Peru 13403 G 528 528
378 Peru 13404 G 528 528
379 Peru 13405 C 528 528
380 Peru 13406 T 528 528
381 Peru 13407 G 528 528
382 Peru 13408 T 528 528
383 Peru 13409 A 528 528
384 Peru 13410 G 528 528
385 Peru 13411 T 528 528
386 Peru 13412 T 528 528
387 Peru 13413 G 528 528
388 Peru 13414 T 528 528
389 Peru 13415 G 528 528
390 Peru 13416 A 528 528
391 Peru 13417 T 528 528
392 Peru 13418 C 528 528
393 Peru 13419 A 528 528
394 Peru 13420 A 528 528
395 Peru 13421 C 528 528
396 Peru 13422 T 528 528
397 Peru 13423 C 528 528
398 Peru 13424 C 528 528
399 Peru 13425 G 528 528
400 Peru 13426 C T 528 526 Arg4387Arg
401 Peru 13427 G 528 528
402 Peru 13428 A 528 528
403 Peru 13429 A 528 528
404 Peru 13430 C 528 528
405 Peru 13431 C 528 528
406 Peru 13432 C 528 528
407 Peru 13433 A 528 528
408 Peru 13434 T 528 528
409 Peru 13435 G 528 528
410 Peru 13436 C 528 528
411 Peru 13437 T 528 528
412 Peru 13438 T 528 528
413 Peru 13439 C 528 528
414 Peru 13440 A 528 528
415 Peru 13441 G 526 526