National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Pakistan 13026 C 57 57
1 Pakistan 13027 T 57 57
2 Pakistan 13028 G 57 57
3 Pakistan 13029 G 57 57
4 Pakistan 13030 T 57 57
5 Pakistan 13031 A 57 57
6 Pakistan 13032 A 57 57
7 Pakistan 13033 T 57 57
8 Pakistan 13034 G 57 57
9 Pakistan 13035 C 57 57
10 Pakistan 13036 A 57 57
11 Pakistan 13037 A 57 57
12 Pakistan 13038 C 57 57
13 Pakistan 13039 A 57 57
14 Pakistan 13040 G 57 57
15 Pakistan 13041 A 57 57
16 Pakistan 13042 A 57 57
17 Pakistan 13043 G 57 57
18 Pakistan 13044 T 57 57
19 Pakistan 13045 G 57 57
20 Pakistan 13046 C 57 57
21 Pakistan 13047 C 57 57
22 Pakistan 13048 T 57 57
23 Pakistan 13049 G 57 57
24 Pakistan 13050 C 57 57
25 Pakistan 13051 C 57 57
26 Pakistan 13052 A 57 57
27 Pakistan 13053 A 57 57
28 Pakistan 13054 T 57 57
29 Pakistan 13055 T 57 57
30 Pakistan 13056 C 57 57
31 Pakistan 13057 A 57 57
32 Pakistan 13058 A 57 57
33 Pakistan 13059 C 57 57
34 Pakistan 13060 T 57 57
35 Pakistan 13061 G 57 57
36 Pakistan 13062 T 57 57
37 Pakistan 13063 A 57 57
38 Pakistan 13064 T 57 57
39 Pakistan 13065 T 57 57
40 Pakistan 13066 A 57 57
41 Pakistan 13067 T 57 57
42 Pakistan 13068 C 57 57
43 Pakistan 13069 T 57 57
44 Pakistan 13070 T 57 57
45 Pakistan 13071 T 57 57
46 Pakistan 13072 C 57 57
47 Pakistan 13073 T 57 57
48 Pakistan 13074 G 57 57
49 Pakistan 13075 T 57 56
50 Pakistan 13076 G 57 56
51 Pakistan 13077 C 57 56
52 Pakistan 13078 T 57 56
53 Pakistan 13079 T 57 56
54 Pakistan 13080 T 57 56
55 Pakistan 13081 T 57 56
56 Pakistan 13082 G 57 56
57 Pakistan 13083 C 57 56
58 Pakistan 13084 T 57 56
59 Pakistan 13085 G 57 56
60 Pakistan 13086 T 57 56
61 Pakistan 13087 A 57 56
62 Pakistan 13088 G 57 56
63 Pakistan 13089 A 57 56
64 Pakistan 13090 T 57 56
65 Pakistan 13091 G 57 56
66 Pakistan 13092 C 57 56
67 Pakistan 13093 T 57 56
68 Pakistan 13094 G 57 56
69 Pakistan 13095 C 57 56
70 Pakistan 13096 T 57 56
71 Pakistan 13097 A 57 56
72 Pakistan 13098 A 57 56
73 Pakistan 13099 A 57 56
74 Pakistan 13100 G 57 56
75 Pakistan 13101 C 57 56
76 Pakistan 13102 T 57 57
77 Pakistan 13103 T 57 57
78 Pakistan 13104 A 57 57
79 Pakistan 13105 C 57 57
80 Pakistan 13106 A 57 57
81 Pakistan 13107 A 57 57
82 Pakistan 13108 A 57 57
83 Pakistan 13109 G 57 57
84 Pakistan 13110 A 57 57
85 Pakistan 13111 T 57 57
86 Pakistan 13112 T 57 57
87 Pakistan 13113 A 57 57
88 Pakistan 13114 T 57 57
89 Pakistan 13115 C 57 57
90 Pakistan 13116 T 57 57
91 Pakistan 13117 A 57 57
92 Pakistan 13118 G 57 57
93 Pakistan 13119 C 57 57
94 Pakistan 13120 T 57 57
95 Pakistan 13121 A 57 57
96 Pakistan 13122 G 57 57
97 Pakistan 13123 T 57 57
98 Pakistan 13124 G 57 57
99 Pakistan 13125 G 57 57
100 Pakistan 13126 G 57 57
101 Pakistan 13127 G 57 57
102 Pakistan 13128 G 57 57
103 Pakistan 13129 A 57 57
104 Pakistan 13130 C 57 57
105 Pakistan 13131 A 57 57
106 Pakistan 13132 A 57 57
107 Pakistan 13133 C 57 57
108 Pakistan 13134 C 57 57
109 Pakistan 13135 A 57 57
110 Pakistan 13136 A 57 57
111 Pakistan 13137 T 57 57
112 Pakistan 13138 C 57 57
113 Pakistan 13139 A 57 57
114 Pakistan 13140 C 57 57
115 Pakistan 13141 T 57 57
116 Pakistan 13142 A 57 57
117 Pakistan 13143 A 57 57
118 Pakistan 13144 T 57 57
119 Pakistan 13145 T 57 57
120 Pakistan 13146 G 57 57
121 Pakistan 13147 T 57 57
122 Pakistan 13148 G 57 57
123 Pakistan 13149 T 57 57
124 Pakistan 13150 T 57 57
125 Pakistan 13151 A 57 57
126 Pakistan 13152 A 57 57
127 Pakistan 13153 G 57 57
128 Pakistan 13154 A 57 57
129 Pakistan 13155 T 57 57
130 Pakistan 13156 G 57 57
131 Pakistan 13157 T 57 57
132 Pakistan 13158 T 57 57
133 Pakistan 13159 G 57 57
134 Pakistan 13160 T 57 57
135 Pakistan 13161 G 57 57
136 Pakistan 13162 T 57 57
137 Pakistan 13163 A 57 57
138 Pakistan 13164 C 57 57
139 Pakistan 13165 A 57 57
140 Pakistan 13166 C 57 57
141 Pakistan 13167 A 57 57
142 Pakistan 13168 C 57 57
143 Pakistan 13169 A 57 57
144 Pakistan 13170 C 57 57
145 Pakistan 13171 T 57 57
146 Pakistan 13172 G 57 57
147 Pakistan 13173 G 57 57
148 Pakistan 13174 T 57 57
149 Pakistan 13175 A 57 57
150 Pakistan 13176 C 57 57
151 Pakistan 13177 T 57 57
152 Pakistan 13178 G 57 57
153 Pakistan 13179 G 57 57
154 Pakistan 13180 T 57 57
155 Pakistan 13181 C 57 57
156 Pakistan 13182 A 57 57
157 Pakistan 13183 G 57 57
158 Pakistan 13184 G 57 57
159 Pakistan 13185 C 57 57
160 Pakistan 13186 A 57 57
161 Pakistan 13187 A 57 57
162 Pakistan 13188 T 57 57
163 Pakistan 13189 A 57 57
164 Pakistan 13190 A 57 57
165 Pakistan 13191 C 57 57
166 Pakistan 13192 A 57 57
167 Pakistan 13193 G 57 57
168 Pakistan 13194 T 57 57
169 Pakistan 13195 T 57 57
170 Pakistan 13196 A 57 57
171 Pakistan 13197 C 57 57
172 Pakistan 13198 A 57 57
173 Pakistan 13199 C 57 57
174 Pakistan 13200 C 57 57
175 Pakistan 13201 G 57 57
176 Pakistan 13202 G 57 57
177 Pakistan 13203 A 57 57
178 Pakistan 13204 A 57 57
179 Pakistan 13205 G 57 57
180 Pakistan 13206 C 57 57
181 Pakistan 13207 C 57 57
182 Pakistan 13208 A 57 57
183 Pakistan 13209 A 57 57
184 Pakistan 13210 T 57 57
185 Pakistan 13211 A 57 57
186 Pakistan 13212 T 57 57
187 Pakistan 13213 G 57 57
188 Pakistan 13214 G 57 57
189 Pakistan 13215 A 57 57
190 Pakistan 13216 T 57 57
191 Pakistan 13217 C 57 57
192 Pakistan 13218 A 57 57
193 Pakistan 13219 A 57 57
194 Pakistan 13220 G 57 57
195 Pakistan 13221 A 57 57
196 Pakistan 13222 A 57 57
197 Pakistan 13223 T 57 57
198 Pakistan 13224 C 57 57
199 Pakistan 13225 C 57 57
200 Pakistan 13226 T 57 57
201 Pakistan 13227 T 57 57
202 Pakistan 13228 T 57 57
203 Pakistan 13229 G 57 57
204 Pakistan 13230 G 57 57
205 Pakistan 13231 T 57 57
206 Pakistan 13232 G 57 57
207 Pakistan 13233 G 57 57
208 Pakistan 13234 T 57 57
209 Pakistan 13235 G 57 57
210 Pakistan 13236 C 57 57
211 Pakistan 13237 A 57 57
212 Pakistan 13238 T 57 57
213 Pakistan 13239 C 57 57
214 Pakistan 13240 G 57 57
215 Pakistan 13241 T 57 57
216 Pakistan 13242 G 57 57
217 Pakistan 13243 T 57 57
218 Pakistan 13244 T 57 57
219 Pakistan 13245 G 57 57
220 Pakistan 13246 T 57 57
221 Pakistan 13247 C 57 57
222 Pakistan 13248 T 57 57
223 Pakistan 13249 G 57 57
224 Pakistan 13250 T 57 57
225 Pakistan 13251 A 57 57
226 Pakistan 13252 C 57 57
227 Pakistan 13253 T 57 57
228 Pakistan 13254 G 57 57
229 Pakistan 13255 C 57 57
230 Pakistan 13256 C 57 57
231 Pakistan 13257 G 57 57
232 Pakistan 13258 T 57 57
233 Pakistan 13259 T 57 57
234 Pakistan 13260 G 57 57
235 Pakistan 13261 C 57 57
236 Pakistan 13262 C 57 57
237 Pakistan 13263 A 57 57
238 Pakistan 13264 C 57 57
239 Pakistan 13265 A 57 57
240 Pakistan 13266 T 57 57
241 Pakistan 13267 A 57 57
242 Pakistan 13268 G 57 57
243 Pakistan 13269 A 57 57
244 Pakistan 13270 T 57 57
245 Pakistan 13271 C 57 57
246 Pakistan 13272 A 57 57
247 Pakistan 13273 T 57 57
248 Pakistan 13274 C 57 57
249 Pakistan 13275 C 57 57
250 Pakistan 13276 A 57 57
251 Pakistan 13277 A 57 57
252 Pakistan 13278 A 57 57
253 Pakistan 13279 T 57 57
254 Pakistan 13280 C 57 57
255 Pakistan 13281 C 57 57
256 Pakistan 13282 T 57 56
257 Pakistan 13283 A 57 56
258 Pakistan 13284 A 57 56
259 Pakistan 13285 A 57 56
260 Pakistan 13286 G 57 56
261 Pakistan 13287 G 57 56
262 Pakistan 13288 A 57 56
263 Pakistan 13289 T 57 56
264 Pakistan 13290 T 57 56
265 Pakistan 13291 T 57 56
266 Pakistan 13292 T 57 56
267 Pakistan 13293 G 57 56
268 Pakistan 13294 T 57 56
269 Pakistan 13295 G 57 56
270 Pakistan 13296 A 57 56
271 Pakistan 13297 C 57 56
272 Pakistan 13298 T 57 56
273 Pakistan 13299 T 57 56
274 Pakistan 13300 A 57 56
275 Pakistan 13301 A 57 56
276 Pakistan 13302 A 57 56
277 Pakistan 13303 A 57 56
278 Pakistan 13304 G 57 56
279 Pakistan 13305 G 57 56
280 Pakistan 13306 T 57 57
281 Pakistan 13307 A 57 57
282 Pakistan 13308 A 57 57
283 Pakistan 13309 G 57 57
284 Pakistan 13310 T 57 57
285 Pakistan 13311 A 57 57
286 Pakistan 13312 T 57 57
287 Pakistan 13313 G 57 57
288 Pakistan 13314 T 57 57
289 Pakistan 13315 A 57 57
290 Pakistan 13316 C 57 57
291 Pakistan 13317 A 57 57
292 Pakistan 13318 A 57 57
293 Pakistan 13319 A 57 57
294 Pakistan 13320 T 57 57
295 Pakistan 13321 A 57 57
296 Pakistan 13322 C 57 57
297 Pakistan 13323 C 57 57
298 Pakistan 13324 T 57 57
299 Pakistan 13325 A 57 57
300 Pakistan 13326 C 57 57
301 Pakistan 13327 A 57 57
302 Pakistan 13328 A 57 57
303 Pakistan 13329 C 57 57
304 Pakistan 13330 T 57 57
305 Pakistan 13331 T 57 57
306 Pakistan 13332 G 57 57
307 Pakistan 13333 T 57 57
308 Pakistan 13334 G 57 57
309 Pakistan 13335 C 57 57
310 Pakistan 13336 T 57 57
311 Pakistan 13337 A 57 57
312 Pakistan 13338 A 57 57
313 Pakistan 13339 T 57 57
314 Pakistan 13340 G 57 57
315 Pakistan 13341 A 57 56
316 Pakistan 13342 C 57 56
317 Pakistan 13343 C 57 56
318 Pakistan 13344 C 57 56
319 Pakistan 13345 T 57 56
320 Pakistan 13346 G 57 56
321 Pakistan 13347 T 57 56
322 Pakistan 13348 G 57 56
323 Pakistan 13349 G 57 56
324 Pakistan 13350 G 57 56
325 Pakistan 13351 T 57 56
326 Pakistan 13352 T 57 56
327 Pakistan 13353 T 57 56
328 Pakistan 13354 T 57 56
329 Pakistan 13355 A 57 56
330 Pakistan 13356 C 57 56
331 Pakistan 13357 A 57 56
332 Pakistan 13358 C 57 56
333 Pakistan 13359 T 57 56
334 Pakistan 13360 T 57 56
335 Pakistan 13361 A 57 57
336 Pakistan 13362 A 57 57
337 Pakistan 13363 A 57 57
338 Pakistan 13364 A 57 57
339 Pakistan 13365 A 57 57
340 Pakistan 13366 C 57 57
341 Pakistan 13367 A 57 57
342 Pakistan 13368 C 57 57
343 Pakistan 13369 A 57 57
344 Pakistan 13370 G 57 57
345 Pakistan 13371 T 57 57
346 Pakistan 13372 C 57 57
347 Pakistan 13373 T 57 57
348 Pakistan 13374 G 57 57
349 Pakistan 13375 T 57 57
350 Pakistan 13376 A 57 57
351 Pakistan 13377 C 57 57
352 Pakistan 13378 C 57 57
353 Pakistan 13379 G 57 57
354 Pakistan 13380 T 57 57
355 Pakistan 13381 C 57 57
356 Pakistan 13382 T 57 57
357 Pakistan 13383 G 57 57
358 Pakistan 13384 C 57 57
359 Pakistan 13385 G 57 57
360 Pakistan 13386 G 57 57
361 Pakistan 13387 T 57 57
362 Pakistan 13388 A 57 57
363 Pakistan 13389 T 57 57
364 Pakistan 13390 G 57 57
365 Pakistan 13391 T 57 57
366 Pakistan 13392 G 57 57
367 Pakistan 13393 G 57 57
368 Pakistan 13394 A 57 57
369 Pakistan 13395 A 57 57
370 Pakistan 13396 A 57 57
371 Pakistan 13397 G 57 57
372 Pakistan 13398 G 57 57
373 Pakistan 13399 T 57 57
374 Pakistan 13400 T 57 57
375 Pakistan 13401 A 57 57
376 Pakistan 13402 T 57 57
377 Pakistan 13403 G 57 57
378 Pakistan 13404 G 57 57
379 Pakistan 13405 C 57 57
380 Pakistan 13406 T 57 57
381 Pakistan 13407 G 57 57
382 Pakistan 13408 T 57 57
383 Pakistan 13409 A 57 57
384 Pakistan 13410 G 57 57
385 Pakistan 13411 T 57 57
386 Pakistan 13412 T 57 57
387 Pakistan 13413 G 57 57
388 Pakistan 13414 T 57 57
389 Pakistan 13415 G 57 57
390 Pakistan 13416 A 57 57
391 Pakistan 13417 T 57 57
392 Pakistan 13418 C 57 57
393 Pakistan 13419 A 57 57
394 Pakistan 13420 A 57 57
395 Pakistan 13421 C 57 57
396 Pakistan 13422 T 57 57
397 Pakistan 13423 C 57 57
398 Pakistan 13424 C 57 57
399 Pakistan 13425 G 57 57
400 Pakistan 13426 C 57 57
401 Pakistan 13427 G 57 57
402 Pakistan 13428 A 57 57
403 Pakistan 13429 A 57 57
404 Pakistan 13430 C 57 57
405 Pakistan 13431 C 57 57
406 Pakistan 13432 C 57 57
407 Pakistan 13433 A 57 57
408 Pakistan 13434 T 57 57
409 Pakistan 13435 G 57 57
410 Pakistan 13436 C 57 57
411 Pakistan 13437 T 57 57
412 Pakistan 13438 T 57 57
413 Pakistan 13439 C 57 57
414 Pakistan 13440 A 57 57
415 Pakistan 13441 G 57 57