National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 3                                 4    
C   39   2                                    
D   21                                        
E   12       1   1                            
F   15                                        
G   39           1                            
H   9                                        
I   12                                        
K   24                                        
L   24         1         3                    
M   12                                        
N   21                 1     1                
P   24                         1              
Q   18                                        
R   6                             1          
S   18                                        
T   39               1                 1      
V   27                                   3    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Norway 13026 C 1277 1277
1 Norway 13027 T 1277 1277
2 Norway 13028 G 1277 1277
3 Norway 13029 G 1277 1277
4 Norway 13030 T 1277 1277
5 Norway 13031 A 1277 1277
6 Norway 13032 A 1277 1277
7 Norway 13033 T 1277 1277
8 Norway 13034 G 1277 1277
9 Norway 13035 C T 1277 1275 Ala4257Val
10 Norway 13036 A 1277 1277
11 Norway 13037 A 1277 1277
12 Norway 13038 C 1277 1277
13 Norway 13039 A 1277 1277
14 Norway 13040 G 1277 1277
15 Norway 13041 A 1277 1277
16 Norway 13042 A 1277 1277
17 Norway 13043 G 1277 1277
18 Norway 13044 T 1277 1277
19 Norway 13045 G T 1277 1276 Val4260Val
20 Norway 13046 C 1277 1277
21 Norway 13047 C 1277 1277
22 Norway 13048 T 1277 1277
23 Norway 13049 G 1277 1277
24 Norway 13050 C 1277 1277
25 Norway 13051 C T 1277 1276 Ala4262Ala
26 Norway 13052 A 1277 1277
27 Norway 13053 A 1277 1277
28 Norway 13054 T 1277 1277
29 Norway 13055 T 1277 1277
30 Norway 13056 C 1277 1277
31 Norway 13057 A 1277 1277
32 Norway 13058 A 1277 1277
33 Norway 13059 C 1277 1277
34 Norway 13060 T C 1277 1270 Thr4265Thr
35 Norway 13061 G 1277 1277
36 Norway 13062 T 1277 1277
37 Norway 13063 A 1277 1277
38 Norway 13064 T 1277 1277
39 Norway 13065 T 1277 1277
40 Norway 13066 A G 1277 1275 Leu4267Leu
41 Norway 13067 T 1277 1277
42 Norway 13068 C 1277 1277
43 Norway 13069 T 1277 1277
44 Norway 13070 T 1277 1277
45 Norway 13071 T 1277 1277
46 Norway 13072 C 1277 1277
47 Norway 13073 T 1277 1277
48 Norway 13074 G 1277 1277
49 Norway 13075 T 1277 1277
50 Norway 13076 G 1277 1277
51 Norway 13077 C 1277 1277
52 Norway 13078 T 1277 1277
53 Norway 13079 T 1277 1277
54 Norway 13080 T 1277 1277
55 Norway 13081 T 1277 1277
56 Norway 13082 G 1277 1277
57 Norway 13083 C 1277 1277
58 Norway 13084 T 1277 1277
59 Norway 13085 G 1277 1277
60 Norway 13086 T 1277 1277
61 Norway 13087 A 1277 1277
62 Norway 13088 G 1277 1277
63 Norway 13089 A 1277 1277
64 Norway 13090 T 1277 1277
65 Norway 13091 G 1277 1277
66 Norway 13092 C 1277 1277
67 Norway 13093 T 1277 1277
68 Norway 13094 G 1277 1277
69 Norway 13095 C T 1277 1276 Ala4277Val
70 Norway 13096 T 1277 1277
71 Norway 13097 A 1277 1277
72 Norway 13098 A 1277 1277
73 Norway 13099 A 1277 1277
74 Norway 13100 G 1277 1277
75 Norway 13101 C 1277 1277
76 Norway 13102 T G 1277 1276 Ala4279Ala
77 Norway 13103 T 1277 1277
78 Norway 13104 A 1277 1277
79 Norway 13105 C 1277 1277
80 Norway 13106 A 1277 1277
81 Norway 13107 A 1277 1277
82 Norway 13108 A 1277 1277
83 Norway 13109 G 1277 1277
84 Norway 13110 A 1277 1277
85 Norway 13111 T 1277 1277
86 Norway 13112 T 1277 1277
87 Norway 13113 A 1277 1277
88 Norway 13114 T 1277 1277
89 Norway 13115 C T 1277 1274 Leu4284Leu
90 Norway 13116 T 1277 1277
91 Norway 13117 A 1277 1277
92 Norway 13118 G 1277 1277
93 Norway 13119 C T 1277 1275 Ala4285Val
94 Norway 13120 T 1277 1277
95 Norway 13121 A 1277 1277
96 Norway 13122 G 1277 1277
97 Norway 13123 T 1277 1277
98 Norway 13124 G 1277 1277
99 Norway 13125 G 1277 1277
100 Norway 13126 G A 1277 1276 Gly4287Gly
101 Norway 13127 G 1277 1277
102 Norway 13128 G 1277 1277
103 Norway 13129 A 1277 1277
104 Norway 13130 C 1277 1277
105 Norway 13131 A 1277 1277
106 Norway 13132 A 1277 1277
107 Norway 13133 C 1277 1277
108 Norway 13134 C 1277 1277
109 Norway 13135 A 1277 1277
110 Norway 13136 A 1277 1277
111 Norway 13137 T 1277 1277
112 Norway 13138 C 1277 1277
113 Norway 13139 A 1277 1277
114 Norway 13140 C T 1277 1276 Thr4292Ile
115 Norway 13141 T 1277 1277
116 Norway 13142 A 1277 1277
117 Norway 13143 A 1277 1277
118 Norway 13144 T 1277 1277
119 Norway 13145 T 1277 1277
120 Norway 13146 G 1277 1277
121 Norway 13147 T 1277 1277
122 Norway 13148 G 1277 1277
123 Norway 13149 T 1277 1277
124 Norway 13150 T 1277 1277
125 Norway 13151 A 1277 1277
126 Norway 13152 A 1277 1277
127 Norway 13153 G 1277 1277
128 Norway 13154 A 1277 1277
129 Norway 13155 T 1277 1277
130 Norway 13156 G 1277 1277
131 Norway 13157 T 1277 1277
132 Norway 13158 T 1277 1277
133 Norway 13159 G 1277 1277
134 Norway 13160 T 1277 1277
135 Norway 13161 G 1277 1277
136 Norway 13162 T 1277 1277
137 Norway 13163 A 1277 1277
138 Norway 13164 C 1277 1277
139 Norway 13165 A 1277 1277
140 Norway 13166 C 1277 1277
141 Norway 13167 A 1277 1277
142 Norway 13168 C 1277 1277
143 Norway 13169 A 1277 1277
144 Norway 13170 C 1277 1277
145 Norway 13171 T 1277 1277
146 Norway 13172 G 1277 1277
147 Norway 13173 G 1277 1277
148 Norway 13174 T 1277 1277
149 Norway 13175 A 1277 1277
150 Norway 13176 C 1277 1277
151 Norway 13177 T 1277 1277
152 Norway 13178 G 1277 1277
153 Norway 13179 G 1277 1277
154 Norway 13180 T 1277 1277
155 Norway 13181 C 1277 1277
156 Norway 13182 A 1277 1277
157 Norway 13183 G 1277 1277
158 Norway 13184 G 1277 1277
159 Norway 13185 C 1277 1277
160 Norway 13186 A 1277 1277
161 Norway 13187 A 1277 1277
162 Norway 13188 T 1277 1277
163 Norway 13189 A 1277 1277
164 Norway 13190 A 1277 1277
165 Norway 13191 C 1277 1277
166 Norway 13192 A 1277 1277
167 Norway 13193 G 1277 1277
168 Norway 13194 T 1277 1277
169 Norway 13195 T 1277 1277
170 Norway 13196 A 1277 1277
171 Norway 13197 C 1277 1277
172 Norway 13198 A 1277 1277
173 Norway 13199 C 1277 1277
174 Norway 13200 C 1277 1277
175 Norway 13201 G T 1277 1276 Pro4312Pro
176 Norway 13202 G 1277 1277
177 Norway 13203 A 1277 1277
178 Norway 13204 A G 1277 1276 Glu4313Glu
179 Norway 13205 G 1277 1277
180 Norway 13206 C 1277 1277
181 Norway 13207 C 1277 1277
182 Norway 13208 A 1277 1277
183 Norway 13209 A 1277 1277
184 Norway 13210 T G 1277 1272 Asn4315Lys
185 Norway 13211 A 1277 1277
186 Norway 13212 T 1277 1277
187 Norway 13213 G 1277 1277
188 Norway 13214 G 1277 1277
189 Norway 13215 A 1277 1277
190 Norway 13216 T 1277 1277
191 Norway 13217 C 1277 1277
192 Norway 13218 A 1277 1277
193 Norway 13219 A 1277 1277
194 Norway 13220 G 1277 1277
195 Norway 13221 A 1277 1277
196 Norway 13222 A 1277 1277
197 Norway 13223 T 1277 1277
198 Norway 13224 C 1277 1277
199 Norway 13225 C 1277 1277
200 Norway 13226 T 1277 1277
201 Norway 13227 T 1277 1277
202 Norway 13228 T 1277 1277
203 Norway 13229 G 1277 1277
204 Norway 13230 G 1277 1277
205 Norway 13231 T 1277 1277
206 Norway 13232 G 1277 1277
207 Norway 13233 G 1277 1277
208 Norway 13234 T 1277 1277
209 Norway 13235 G 1277 1277
210 Norway 13236 C 1277 1277
211 Norway 13237 A G 1277 1276 Ala4324Ala
212 Norway 13238 T 1277 1277
213 Norway 13239 C 1277 1277
214 Norway 13240 G 1277 1277
215 Norway 13241 T 1277 1277
216 Norway 13242 G 1277 1277
217 Norway 13243 T 1277 1277
218 Norway 13244 T 1277 1277
219 Norway 13245 G 1277 1277
220 Norway 13246 T 1277 1277
221 Norway 13247 C 1277 1277
222 Norway 13248 T 1277 1277
223 Norway 13249 G 1277 1277
224 Norway 13250 T 1277 1277
225 Norway 13251 A 1277 1277
226 Norway 13252 C 1277 1277
227 Norway 13253 T 1277 1277
228 Norway 13254 G 1277 1277
229 Norway 13255 C 1277 1277
230 Norway 13256 C 1277 1277
231 Norway 13257 G 1277 1277
232 Norway 13258 T 1277 1277
233 Norway 13259 T 1277 1277
234 Norway 13260 G 1277 1277
235 Norway 13261 C T 1277 1274 Cys4332Cys
236 Norway 13262 C 1277 1277
237 Norway 13263 A 1277 1277
238 Norway 13264 C 1277 1277
239 Norway 13265 A 1277 1277
240 Norway 13266 T 1277 1277
241 Norway 13267 A 1277 1277
242 Norway 13268 G 1277 1277
243 Norway 13269 A 1277 1277
244 Norway 13270 T 1277 1277
245 Norway 13271 C 1277 1277
246 Norway 13272 A 1277 1277
247 Norway 13273 T 1277 1277
248 Norway 13274 C 1277 1277
249 Norway 13275 C 1277 1277
250 Norway 13276 A 1277 1277
251 Norway 13277 A 1277 1277
252 Norway 13278 A 1277 1277
253 Norway 13279 T C 1277 1276 Asn4338Asn
254 Norway 13280 C 1277 1277
255 Norway 13281 C 1277 1277
256 Norway 13282 T 1277 1277
257 Norway 13283 A 1277 1277
258 Norway 13284 A 1277 1277
259 Norway 13285 A 1277 1277
260 Norway 13286 G 1277 1277
261 Norway 13287 G 1277 1277
262 Norway 13288 A 1277 1277
263 Norway 13289 T 1277 1277
264 Norway 13290 T 1277 1277
265 Norway 13291 T 1277 1277
266 Norway 13292 T 1277 1277
267 Norway 13293 G 1277 1277
268 Norway 13294 T 1277 1277
269 Norway 13295 G 1277 1277
270 Norway 13296 A 1277 1277
271 Norway 13297 C 1277 1277
272 Norway 13298 T 1277 1277
273 Norway 13299 T 1277 1277
274 Norway 13300 A 1277 1277
275 Norway 13301 A 1277 1277
276 Norway 13302 A 1277 1277
277 Norway 13303 A 1277 1277
278 Norway 13304 G 1277 1277
279 Norway 13305 G 1277 1277
280 Norway 13306 T 1277 1277
281 Norway 13307 A 1277 1277
282 Norway 13308 A 1277 1277
283 Norway 13309 G 1277 1277
284 Norway 13310 T 1277 1277
285 Norway 13311 A 1277 1277
286 Norway 13312 T 1277 1277
287 Norway 13313 G 1277 1277
288 Norway 13314 T 1277 1277
289 Norway 13315 A 1277 1277
290 Norway 13316 C 1277 1277
291 Norway 13317 A 1277 1277
292 Norway 13318 A 1277 1277
293 Norway 13319 A 1277 1277
294 Norway 13320 T 1277 1277
295 Norway 13321 A 1277 1277
296 Norway 13322 C 1277 1277
297 Norway 13323 C 1277 1277
298 Norway 13324 T 1277 1277
299 Norway 13325 A 1277 1277
300 Norway 13326 C 1277 1277
301 Norway 13327 A 1277 1277
302 Norway 13328 A 1277 1277
303 Norway 13329 C 1277 1277
304 Norway 13330 T 1277 1277
305 Norway 13331 T 1277 1277
306 Norway 13332 G 1277 1277
307 Norway 13333 T 1277 1277
308 Norway 13334 G 1277 1277
309 Norway 13335 C T 1277 1270 Ala4357Val
310 Norway 13336 T 1277 1277
311 Norway 13337 A 1278 1278
312 Norway 13338 A 1278 1278
313 Norway 13339 T 1278 1278
314 Norway 13340 G 1278 1278
315 Norway 13341 A 1278 1278
316 Norway 13342 C 1278 1278
317 Norway 13343 C 1278 1278
318 Norway 13344 C 1278 1278
319 Norway 13345 T 1278 1278
320 Norway 13346 G 1278 1278
321 Norway 13347 T 1278 1278
322 Norway 13348 G T 1278 1277 Val4361Val
323 Norway 13349 G 1278 1278
324 Norway 13350 G 1278 1278
325 Norway 13351 T 1278 1278
326 Norway 13352 T 1278 1278
327 Norway 13353 T 1278 1278
328 Norway 13354 T 1278 1278
329 Norway 13355 A 1278 1278
330 Norway 13356 C 1278 1278
331 Norway 13357 A 1278 1278
332 Norway 13358 C T 1278 1277 Leu4365Phe
333 Norway 13359 T 1278 1278
334 Norway 13360 T C 1278 1277 Leu4365Leu
335 Norway 13361 A 1278 1278
336 Norway 13362 A 1278 1278
337 Norway 13363 A 1278 1278
338 Norway 13364 A 1277 1277
339 Norway 13365 A 1277 1277
340 Norway 13366 C 1277 1277
341 Norway 13367 A 1277 1277
342 Norway 13368 C 1277 1277
343 Norway 13369 A 1277 1277
344 Norway 13370 G 1277 1277
345 Norway 13371 T 1277 1277
346 Norway 13372 C T 1277 1276 Val4369Val
347 Norway 13373 T 1277 1277
348 Norway 13374 G 1277 1277
349 Norway 13375 T 1277 1277
350 Norway 13376 A 1277 1277
351 Norway 13377 C 1277 1277
352 Norway 13378 C 1277 1277
353 Norway 13379 G 1272 1272
354 Norway 13380 T 1272 1272
355 Norway 13381 C 1272 1272
356 Norway 13382 T 1272 1272
357 Norway 13383 G 1272 1272
358 Norway 13384 C T 1272 1271 Cys4373Cys
359 Norway 13385 G 1272 1272
360 Norway 13386 G 1271 1271
361 Norway 13387 T 1271 1271
362 Norway 13388 A 1271 1271
363 Norway 13389 T 1271 1271
364 Norway 13390 G 1271 1271
365 Norway 13391 T 1271 1271
366 Norway 13392 G 1271 1271
367 Norway 13393 G 1271 1271
368 Norway 13394 A 1271 1271
369 Norway 13395 A 1271 1271
370 Norway 13396 A 1271 1271
371 Norway 13397 G 1271 1271
372 Norway 13398 G 1271 1271
373 Norway 13399 T 1271 1271
374 Norway 13400 T 1271 1271
375 Norway 13401 A 1271 1271
376 Norway 13402 T 1271 1271
377 Norway 13403 G 1271 1271
378 Norway 13404 G 1271 1271
379 Norway 13405 C 1271 1271
380 Norway 13406 T 1271 1271
381 Norway 13407 G 1271 1271
382 Norway 13408 T 1271 1271
383 Norway 13409 A 1271 1271
384 Norway 13410 G 1271 1271
385 Norway 13411 T 1271 1271
386 Norway 13412 T 1271 1271
387 Norway 13413 G 1271 1271
388 Norway 13414 T 1271 1271
389 Norway 13415 G 1271 1271
390 Norway 13416 A 1271 1271
391 Norway 13417 T 1271 1271
392 Norway 13418 C 1271 1271
393 Norway 13419 A 1271 1271
394 Norway 13420 A 1271 1271
395 Norway 13421 C 1271 1271
396 Norway 13422 T 1271 1271
397 Norway 13423 C 1271 1271
398 Norway 13424 C 1271 1271
399 Norway 13425 G 1271 1271
400 Norway 13426 C T 1271 1270 Arg4387Arg
401 Norway 13427 G 1271 1271
402 Norway 13428 A G 1271 1269 Glu4388Gly
403 Norway 13429 A 1271 1271
404 Norway 13430 C 1271 1271
405 Norway 13431 C 1271 1271
406 Norway 13432 C 1271 1271
407 Norway 13433 A 1271 1271
408 Norway 13434 T 1271 1271
409 Norway 13435 G 1271 1271
410 Norway 13436 C 1271 1271
411 Norway 13437 T 1271 1271
412 Norway 13438 T 1271 1271
413 Norway 13439 C 1271 1271
414 Norway 13440 A 1271 1271
415 Norway 13441 G 1271 1271