National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 1                                 2    
C   39   1                                    
D   21     1                                  
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24               1                        
M   12                 1                      
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39               1                        
V   27                                        
W   3                                        
Y   15                                       1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 New_Zealand 13026 C 1109 1109
1 New_Zealand 13027 T 1109 1109
2 New_Zealand 13028 G 1109 1109
3 New_Zealand 13029 G 1109 1109
4 New_Zealand 13030 T 1110 1110
5 New_Zealand 13031 A 1110 1110
6 New_Zealand 13032 A 1110 1110
7 New_Zealand 13033 T 1110 1110
8 New_Zealand 13034 G 1110 1110
9 New_Zealand 13035 C 1110 1110
10 New_Zealand 13036 A 1110 1110
11 New_Zealand 13037 A 1110 1110
12 New_Zealand 13038 C 1110 1110
13 New_Zealand 13039 A 1110 1110
14 New_Zealand 13040 G 1110 1110
15 New_Zealand 13041 A 1110 1110
16 New_Zealand 13042 A 1110 1110
17 New_Zealand 13043 G 1110 1110
18 New_Zealand 13044 T 1110 1110
19 New_Zealand 13045 G 1110 1110
20 New_Zealand 13046 C 1110 1110
21 New_Zealand 13047 C 1110 1110
22 New_Zealand 13048 T 1110 1110
23 New_Zealand 13049 G 1110 1110
24 New_Zealand 13050 C 1110 1110
25 New_Zealand 13051 C T 1110 1108 Ala4262Ala
26 New_Zealand 13052 A 1110 1110
27 New_Zealand 13053 A 1110 1110
28 New_Zealand 13054 T 1110 1110
29 New_Zealand 13055 T 1110 1110
30 New_Zealand 13056 C 1110 1110
31 New_Zealand 13057 A 1110 1110
32 New_Zealand 13058 A 1110 1110
33 New_Zealand 13059 C 1110 1110
34 New_Zealand 13060 T 1110 1110
35 New_Zealand 13061 G 1110 1110
36 New_Zealand 13062 T 1110 1110
37 New_Zealand 13063 A 1110 1110
38 New_Zealand 13064 T 1110 1110
39 New_Zealand 13065 T 1110 1110
40 New_Zealand 13066 A 1110 1110
41 New_Zealand 13067 T 1110 1110
42 New_Zealand 13068 C 1110 1110
43 New_Zealand 13069 T 1110 1110
44 New_Zealand 13070 T 1110 1110
45 New_Zealand 13071 T 1110 1110
46 New_Zealand 13072 C 1110 1110
47 New_Zealand 13073 T 1110 1110
48 New_Zealand 13074 G 1110 1110
49 New_Zealand 13075 T 1110 1110
50 New_Zealand 13076 G 1110 1110
51 New_Zealand 13077 C 1110 1110
52 New_Zealand 13078 T 1110 1110
53 New_Zealand 13079 T 1110 1110
54 New_Zealand 13080 T 1110 1110
55 New_Zealand 13081 T 1110 1110
56 New_Zealand 13082 G 1110 1110
57 New_Zealand 13083 C 1110 1110
58 New_Zealand 13084 T 1110 1110
59 New_Zealand 13085 G 1110 1110
60 New_Zealand 13086 T 1110 1110
61 New_Zealand 13087 A 1110 1110
62 New_Zealand 13088 G 1110 1110
63 New_Zealand 13089 A 1110 1110
64 New_Zealand 13090 T C 1110 1109 Asp4275Asp
65 New_Zealand 13091 G 1110 1110
66 New_Zealand 13092 C 1110 1110
67 New_Zealand 13093 T 1110 1110
68 New_Zealand 13094 G 1110 1110
69 New_Zealand 13095 C 1110 1110
70 New_Zealand 13096 T 1110 1110
71 New_Zealand 13097 A 1110 1110
72 New_Zealand 13098 A 1110 1110
73 New_Zealand 13099 A 1110 1110
74 New_Zealand 13100 G 1110 1110
75 New_Zealand 13101 C 1110 1110
76 New_Zealand 13102 T 1110 1110
77 New_Zealand 13103 T 1110 1110
78 New_Zealand 13104 A 1110 1110
79 New_Zealand 13105 C T 1110 1108 Tyr4280Tyr
80 New_Zealand 13106 A 1110 1110
81 New_Zealand 13107 A 1110 1110
82 New_Zealand 13108 A 1110 1110
83 New_Zealand 13109 G 1110 1110
84 New_Zealand 13110 A 1110 1110
85 New_Zealand 13111 T 1110 1110
86 New_Zealand 13112 T 1110 1110
87 New_Zealand 13113 A 1110 1110
88 New_Zealand 13114 T 1110 1110
89 New_Zealand 13115 C 1110 1110
90 New_Zealand 13116 T 1110 1110
91 New_Zealand 13117 A 1110 1110
92 New_Zealand 13118 G 1110 1110
93 New_Zealand 13119 C T 1110 1109 Ala4285Val
94 New_Zealand 13120 T 1110 1110
95 New_Zealand 13121 A 1110 1110
96 New_Zealand 13122 G 1110 1110
97 New_Zealand 13123 T 1110 1103
98 New_Zealand 13124 G 1110 1110
99 New_Zealand 13125 G 1110 1110
100 New_Zealand 13126 G 1110 1110
101 New_Zealand 13127 G 1110 1110
102 New_Zealand 13128 G 1110 1110
103 New_Zealand 13129 A 1110 1110
104 New_Zealand 13130 C 1110 1110
105 New_Zealand 13131 A 1110 1110
106 New_Zealand 13132 A 1110 1110
107 New_Zealand 13133 C 1110 1110
108 New_Zealand 13134 C 1110 1110
109 New_Zealand 13135 A 1110 1110
110 New_Zealand 13136 A 1110 1110
111 New_Zealand 13137 T 1110 1110
112 New_Zealand 13138 C 1110 1110
113 New_Zealand 13139 A 1110 1110
114 New_Zealand 13140 C 1110 1110
115 New_Zealand 13141 T 1110 1110
116 New_Zealand 13142 A 1110 1110
117 New_Zealand 13143 A 1110 1110
118 New_Zealand 13144 T 1110 1110
119 New_Zealand 13145 T 1110 1110
120 New_Zealand 13146 G 1110 1110
121 New_Zealand 13147 T 1110 1110
122 New_Zealand 13148 G 1110 1110
123 New_Zealand 13149 T 1110 1110
124 New_Zealand 13150 T 1110 1110
125 New_Zealand 13151 A 1110 1110
126 New_Zealand 13152 A 1110 1110
127 New_Zealand 13153 G 1110 1110
128 New_Zealand 13154 A 1110 1110
129 New_Zealand 13155 T 1110 1110
130 New_Zealand 13156 G 1110 1110
131 New_Zealand 13157 T 1110 1110
132 New_Zealand 13158 T 1110 1110
133 New_Zealand 13159 G 1110 1110
134 New_Zealand 13160 T 1110 1110
135 New_Zealand 13161 G 1110 1110
136 New_Zealand 13162 T 1110 1110
137 New_Zealand 13163 A 1110 1110
138 New_Zealand 13164 C 1110 1110
139 New_Zealand 13165 A 1110 1110
140 New_Zealand 13166 C 1110 1110
141 New_Zealand 13167 A 1110 1110
142 New_Zealand 13168 C 1110 1110
143 New_Zealand 13169 A 1110 1110
144 New_Zealand 13170 C 1110 1110
145 New_Zealand 13171 T 1110 1110
146 New_Zealand 13172 G 1110 1110
147 New_Zealand 13173 G 1110 1110
148 New_Zealand 13174 T 1110 1110
149 New_Zealand 13175 A 1110 1110
150 New_Zealand 13176 C T 1110 1108 Thr4304Ile
151 New_Zealand 13177 T 1110 1110
152 New_Zealand 13178 G 1110 1110
153 New_Zealand 13179 G 1110 1110
154 New_Zealand 13180 T 1110 1110
155 New_Zealand 13181 C 1110 1110
156 New_Zealand 13182 A 1110 1110
157 New_Zealand 13183 G 1110 1110
158 New_Zealand 13184 G 1110 1110
159 New_Zealand 13185 C 1110 1110
160 New_Zealand 13186 A 1110 1110
161 New_Zealand 13187 A 1110 1110
162 New_Zealand 13188 T 1110 1110
163 New_Zealand 13189 A 1110 1110
164 New_Zealand 13190 A 1110 1110
165 New_Zealand 13191 C 1110 1110
166 New_Zealand 13192 A 1110 1110
167 New_Zealand 13193 G 1110 1110
168 New_Zealand 13194 T 1110 1110
169 New_Zealand 13195 T 1110 1110
170 New_Zealand 13196 A 1110 1110
171 New_Zealand 13197 C 1110 1110
172 New_Zealand 13198 A 1110 1110
173 New_Zealand 13199 C 1110 1110
174 New_Zealand 13200 C 1110 1110
175 New_Zealand 13201 G 1110 1110
176 New_Zealand 13202 G 1110 1110
177 New_Zealand 13203 A 1110 1110
178 New_Zealand 13204 A 1110 1110
179 New_Zealand 13205 G 1110 1110
180 New_Zealand 13206 C 1110 1110
181 New_Zealand 13207 C 1110 1110
182 New_Zealand 13208 A 1110 1110
183 New_Zealand 13209 A 1110 1110
184 New_Zealand 13210 T 1110 1110
185 New_Zealand 13211 A 1110 1110
186 New_Zealand 13212 T A 1110 1109 Met4316Lys
187 New_Zealand 13213 G 1110 1110
188 New_Zealand 13214 G 1110 1110
189 New_Zealand 13215 A 1110 1110
190 New_Zealand 13216 T 1110 1110
191 New_Zealand 13217 C 1110 1110
192 New_Zealand 13218 A 1110 1110
193 New_Zealand 13219 A 1110 1110
194 New_Zealand 13220 G 1110 1110
195 New_Zealand 13221 A 1110 1110
196 New_Zealand 13222 A 1110 1110
197 New_Zealand 13223 T 1110 1110
198 New_Zealand 13224 C 1110 1110
199 New_Zealand 13225 C 1110 1110
200 New_Zealand 13226 T 1110 1110
201 New_Zealand 13227 T 1110 1110
202 New_Zealand 13228 T 1110 1110
203 New_Zealand 13229 G 1110 1110
204 New_Zealand 13230 G 1110 1110
205 New_Zealand 13231 T 1110 1110
206 New_Zealand 13232 G 1110 1110
207 New_Zealand 13233 G 1110 1110
208 New_Zealand 13234 T 1110 1110
209 New_Zealand 13235 G 1110 1110
210 New_Zealand 13236 C 1110 1110
211 New_Zealand 13237 A 1110 1110
212 New_Zealand 13238 T 1110 1110
213 New_Zealand 13239 C 1110 1110
214 New_Zealand 13240 G 1110 1110
215 New_Zealand 13241 T 1110 1110
216 New_Zealand 13242 G 1110 1110
217 New_Zealand 13243 T 1110 1110
218 New_Zealand 13244 T 1110 1110
219 New_Zealand 13245 G 1110 1110
220 New_Zealand 13246 T 1110 1110
221 New_Zealand 13247 C 1110 1110
222 New_Zealand 13248 T 1110 1110
223 New_Zealand 13249 G 1110 1110
224 New_Zealand 13250 T 1110 1110
225 New_Zealand 13251 A 1110 1110
226 New_Zealand 13252 C 1110 1110
227 New_Zealand 13253 T 1110 1110
228 New_Zealand 13254 G 1110 1110
229 New_Zealand 13255 C T 1110 1107 Cys4330Cys
230 New_Zealand 13256 C 1110 1110
231 New_Zealand 13257 G 1110 1110
232 New_Zealand 13258 T 1110 1110
233 New_Zealand 13259 T 1110 1110
234 New_Zealand 13260 G 1110 1110
235 New_Zealand 13261 C 1110 1110
236 New_Zealand 13262 C 1110 1110
237 New_Zealand 13263 A 1110 1110
238 New_Zealand 13264 C 1110 1110
239 New_Zealand 13265 A 1110 1110
240 New_Zealand 13266 T 1110 1110
241 New_Zealand 13267 A 1110 1110
242 New_Zealand 13268 G 1110 1110
243 New_Zealand 13269 A 1110 1110
244 New_Zealand 13270 T 1110 1110
245 New_Zealand 13271 C 1110 1110
246 New_Zealand 13272 A 1110 1110
247 New_Zealand 13273 T 1110 1110
248 New_Zealand 13274 C 1110 1110
249 New_Zealand 13275 C 1110 1110
250 New_Zealand 13276 A 1110 1110
251 New_Zealand 13277 A 1110 1110
252 New_Zealand 13278 A 1110 1110
253 New_Zealand 13279 T 1110 1110
254 New_Zealand 13280 C 1110 1110
255 New_Zealand 13281 C 1110 1110
256 New_Zealand 13282 T 1110 1110
257 New_Zealand 13283 A 1110 1110
258 New_Zealand 13284 A 1110 1110
259 New_Zealand 13285 A 1110 1110
260 New_Zealand 13286 G 1110 1110
261 New_Zealand 13287 G 1110 1110
262 New_Zealand 13288 A 1110 1110
263 New_Zealand 13289 T 1110 1110
264 New_Zealand 13290 T 1110 1110
265 New_Zealand 13291 T 1110 1110
266 New_Zealand 13292 T 1110 1110
267 New_Zealand 13293 G 1110 1110
268 New_Zealand 13294 T 1110 1110
269 New_Zealand 13295 G 1110 1110
270 New_Zealand 13296 A 1110 1110
271 New_Zealand 13297 C 1110 1110
272 New_Zealand 13298 T 1110 1110
273 New_Zealand 13299 T 1110 1110
274 New_Zealand 13300 A 1110 1110
275 New_Zealand 13301 A 1110 1110
276 New_Zealand 13302 A 1110 1110
277 New_Zealand 13303 A 1110 1110
278 New_Zealand 13304 G 1110 1110
279 New_Zealand 13305 G 1110 1110
280 New_Zealand 13306 T 1110 1110
281 New_Zealand 13307 A 1110 1110
282 New_Zealand 13308 A 1110 1110
283 New_Zealand 13309 G 1110 1110
284 New_Zealand 13310 T 1110 1110
285 New_Zealand 13311 A 1110 1110
286 New_Zealand 13312 T 1110 1110
287 New_Zealand 13313 G 1110 1110
288 New_Zealand 13314 T 1110 1110
289 New_Zealand 13315 A 1110 1110
290 New_Zealand 13316 C 1110 1110
291 New_Zealand 13317 A 1110 1110
292 New_Zealand 13318 A 1110 1110
293 New_Zealand 13319 A 1110 1110
294 New_Zealand 13320 T 1110 1110
295 New_Zealand 13321 A 1110 1110
296 New_Zealand 13322 C 1110 1110
297 New_Zealand 13323 C 1110 1110
298 New_Zealand 13324 T 1110 1110
299 New_Zealand 13325 A 1110 1110
300 New_Zealand 13326 C 1110 1110
301 New_Zealand 13327 A 1110 1110
302 New_Zealand 13328 A 1110 1110
303 New_Zealand 13329 C 1110 1110
304 New_Zealand 13330 T 1110 1110
305 New_Zealand 13331 T 1110 1110
306 New_Zealand 13332 G 1110 1110
307 New_Zealand 13333 T 1110 1110
308 New_Zealand 13334 G 1110 1110
309 New_Zealand 13335 C T 1110 1108 Ala4357Val
310 New_Zealand 13336 T 1110 1110
311 New_Zealand 13337 A 1110 1110
312 New_Zealand 13338 A 1110 1110
313 New_Zealand 13339 T 1110 1110
314 New_Zealand 13340 G 1110 1110
315 New_Zealand 13341 A 1110 1110
316 New_Zealand 13342 C 1110 1110
317 New_Zealand 13343 C 1110 1110
318 New_Zealand 13344 C 1110 1110
319 New_Zealand 13345 T 1110 1110
320 New_Zealand 13346 G 1110 1110
321 New_Zealand 13347 T 1110 1110
322 New_Zealand 13348 G 1110 1110
323 New_Zealand 13349 G 1110 1110
324 New_Zealand 13350 G 1110 1110
325 New_Zealand 13351 T 1110 1110
326 New_Zealand 13352 T 1110 1110
327 New_Zealand 13353 T 1110 1110
328 New_Zealand 13354 T 1110 1110
329 New_Zealand 13355 A 1110 1110
330 New_Zealand 13356 C 1110 1110
331 New_Zealand 13357 A 1110 1110
332 New_Zealand 13358 C A 1110 1109 Leu4365Ile
333 New_Zealand 13359 T 1110 1110
334 New_Zealand 13360 T 1110 1110
335 New_Zealand 13361 A 1110 1110
336 New_Zealand 13362 A 1110 1110
337 New_Zealand 13363 A 1110 1110
338 New_Zealand 13364 A 1094 1094
339 New_Zealand 13365 A 1094 1094
340 New_Zealand 13366 C 1094 1094
341 New_Zealand 13367 A 1094 1094
342 New_Zealand 13368 C 1094 1094
343 New_Zealand 13369 A 1094 1094
344 New_Zealand 13370 G 1094 1094
345 New_Zealand 13371 T 1094 1094
346 New_Zealand 13372 C 1094 1094
347 New_Zealand 13373 T 1094 1094
348 New_Zealand 13374 G 1094 1094
349 New_Zealand 13375 T 1094 1094
350 New_Zealand 13376 A 1094 1094
351 New_Zealand 13377 C 1094 1094
352 New_Zealand 13378 C 1094 1094
353 New_Zealand 13379 G 1083 1082
354 New_Zealand 13380 T 1083 1082
355 New_Zealand 13381 C 1083 1082
356 New_Zealand 13382 T 1083 1082
357 New_Zealand 13383 G 1083 1082
358 New_Zealand 13384 C 1083 1082
359 New_Zealand 13385 G 1083 1082
360 New_Zealand 13386 G 1083 1082
361 New_Zealand 13387 T 1083 1082
362 New_Zealand 13388 A 1083 1082
363 New_Zealand 13389 T 1083 1082
364 New_Zealand 13390 G 1083 1082
365 New_Zealand 13391 T 1083 1082
366 New_Zealand 13392 G 1083 1082
367 New_Zealand 13393 G 1083 1082
368 New_Zealand 13394 A 1083 1082
369 New_Zealand 13395 A 1083 1082
370 New_Zealand 13396 A 1083 1082
371 New_Zealand 13397 G 1083 1082
372 New_Zealand 13398 G 1083 1082
373 New_Zealand 13399 T 1083 1082
374 New_Zealand 13400 T 1083 1082
375 New_Zealand 13401 A 1083 1082
376 New_Zealand 13402 T 1083 1082
377 New_Zealand 13403 G 1083 1082
378 New_Zealand 13404 G 1083 1082
379 New_Zealand 13405 C 1083 1082
380 New_Zealand 13406 T 1083 1082
381 New_Zealand 13407 G 1083 1082
382 New_Zealand 13408 T 1083 1082
383 New_Zealand 13409 A 1083 1082
384 New_Zealand 13410 G 1083 1083
385 New_Zealand 13411 T 1083 1083
386 New_Zealand 13412 T 1083 1083
387 New_Zealand 13413 G 1083 1083
388 New_Zealand 13414 T 1083 1083
389 New_Zealand 13415 G 1083 1083
390 New_Zealand 13416 A 1083 1083
391 New_Zealand 13417 T 1083 1083
392 New_Zealand 13418 C 1083 1083
393 New_Zealand 13419 A 1083 1083
394 New_Zealand 13420 A 1083 1083
395 New_Zealand 13421 C 1083 1083
396 New_Zealand 13422 T 1083 1083
397 New_Zealand 13423 C 1083 1083
398 New_Zealand 13424 C 1083 1083
399 New_Zealand 13425 G 1083 1083
400 New_Zealand 13426 C 1083 1083
401 New_Zealand 13427 G 1083 1083
402 New_Zealand 13428 A 1083 1083
403 New_Zealand 13429 A 1083 1083
404 New_Zealand 13430 C 1083 1083
405 New_Zealand 13431 C 1083 1083
406 New_Zealand 13432 C 1083 1083
407 New_Zealand 13433 A 1083 1083
408 New_Zealand 13434 T 1083 1083
409 New_Zealand 13435 G 1083 1083
410 New_Zealand 13436 C 1083 1083
411 New_Zealand 13437 T 1083 1083
412 New_Zealand 13438 T 1083 1083
413 New_Zealand 13439 C 1083 1083
414 New_Zealand 13440 A 1083 1083
415 New_Zealand 13441 G 1083 1083