National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 2                             1   3    
C   39   3     1                              
D   21     1                                 1
E   12                                        
F   15                   1                    
G   39           4                            
H   9             3                          
I   12                                 1 2    
K   24                       1     1          
L   24         1         2                    
M   12               1                        
N   21                 1     3       2        
P   24                   1     2     3        
Q   18                                        
R   6   1         1               2          
S   18               1       1       1        
T   39               4       1         1      
V   27               1                   5    
W   3                                        
Y   15                                       2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Netherlands 13026 C 5875 5875
1 Netherlands 13027 T 5876 5876
2 Netherlands 13028 G 5876 5876
3 Netherlands 13029 G 5876 5876
4 Netherlands 13030 T 5876 5876
5 Netherlands 13031 A 5876 5876
6 Netherlands 13032 A 5876 5876
7 Netherlands 13033 T 5876 5876
8 Netherlands 13034 G 5876 5876
9 Netherlands 13035 C T 5876 5875 Ala4257Val
10 Netherlands 13036 A 5876 5876
11 Netherlands 13037 A 5876 5876
12 Netherlands 13038 C 5876 5876
13 Netherlands 13039 A 5876 5876
14 Netherlands 13040 G 5876 5876
15 Netherlands 13041 A 5876 5876
16 Netherlands 13042 A 5876 5876
17 Netherlands 13043 G 5876 5876
18 Netherlands 13044 T 5876 5876
19 Netherlands 13045 G 5876 5876
20 Netherlands 13046 C T 5876 5875 Pro4261Ser
21 Netherlands 13047 C 5876 5876
22 Netherlands 13048 T 5876 5876
23 Netherlands 13049 G 5876 5876
24 Netherlands 13050 C 5876 5876
25 Netherlands 13051 C 5876 5876
26 Netherlands 13052 A 5876 5876
27 Netherlands 13053 A 5876 5876
28 Netherlands 13054 T 5876 5876
29 Netherlands 13055 T 5876 5876
30 Netherlands 13056 C 5876 5876
31 Netherlands 13057 A 5876 5876
32 Netherlands 13058 A 5876 5876
33 Netherlands 13059 C T 5876 5862 Thr4265Ile
34 Netherlands 13060 T 5876 5876
35 Netherlands 13061 G 5876 5876
36 Netherlands 13062 T 5876 5876
37 Netherlands 13063 A G 5876 5875 Val4266Val
38 Netherlands 13064 T 5876 5876
39 Netherlands 13065 T 5876 5876
40 Netherlands 13066 A 5876 5876
41 Netherlands 13067 T 5876 5876
42 Netherlands 13068 C 5876 5876
43 Netherlands 13069 T 5876 5876
44 Netherlands 13070 T 5876 5876
45 Netherlands 13071 T 5876 5876
46 Netherlands 13072 C A 5876 5875 Phe4269Leu
47 Netherlands 13073 T 5876 5876
48 Netherlands 13074 G 5876 5876
49 Netherlands 13075 T 5876 5876
50 Netherlands 13076 G 5876 5876
51 Netherlands 13077 C 5876 5876
52 Netherlands 13078 T C 5876 5875 Ala4271Ala
53 Netherlands 13079 T 5876 5876
54 Netherlands 13080 T 5876 5876
55 Netherlands 13081 T 5876 5876
56 Netherlands 13082 G 5876 5876
57 Netherlands 13083 C 5876 5876
58 Netherlands 13084 T 5876 5876
59 Netherlands 13085 G 5876 5876
60 Netherlands 13086 T 5876 5876
61 Netherlands 13087 A 5876 5876
62 Netherlands 13088 G 5876 5876
63 Netherlands 13089 A 5876 5876
64 Netherlands 13090 T 5876 5876
65 Netherlands 13091 G 5876 5876
66 Netherlands 13092 C 5876 5876
67 Netherlands 13093 T 5876 5876
68 Netherlands 13094 G 5876 5876
69 Netherlands 13095 C 5876 5876
70 Netherlands 13096 T 5876 5876
71 Netherlands 13097 A 5876 5876
72 Netherlands 13098 A 5876 5876
73 Netherlands 13099 A 5876 5876
74 Netherlands 13100 G 5876 5876
75 Netherlands 13101 C 5876 5876
76 Netherlands 13102 T 5876 5876
77 Netherlands 13103 T 5876 5876
78 Netherlands 13104 A 5876 5876
79 Netherlands 13105 C T 5876 5875 Tyr4280Tyr
80 Netherlands 13106 A 5876 5876
81 Netherlands 13107 A 5876 5876
82 Netherlands 13108 A 5876 5876
83 Netherlands 13109 G 5876 5876
84 Netherlands 13110 A 5876 5876
85 Netherlands 13111 T 5876 5876
86 Netherlands 13112 T 5876 5876
87 Netherlands 13113 A 5876 5876
88 Netherlands 13114 T C 5876 5875 Tyr4283Tyr
89 Netherlands 13115 C T 5876 5871 Leu4284Leu
90 Netherlands 13116 T 5876 5876
91 Netherlands 13117 A 5876 5876
92 Netherlands 13118 G 5875 5875
93 Netherlands 13119 C T 5875 5869 Ala4285Val
94 Netherlands 13120 T 5875 5875
95 Netherlands 13121 A 5875 5875
96 Netherlands 13122 G A 5875 5874 Ser4286Asn
97 Netherlands 13123 T 5875 5875
98 Netherlands 13124 G 5875 5875
99 Netherlands 13125 G 5875 5875
100 Netherlands 13126 G A 5875 5874 Gly4287Gly
101 Netherlands 13127 G 5875 5875
102 Netherlands 13128 G 5875 5875
103 Netherlands 13129 A 5875 5875
104 Netherlands 13130 C 5875 5875
105 Netherlands 13131 A 5875 5875
106 Netherlands 13132 A 5875 5875
107 Netherlands 13133 C 5875 5875
108 Netherlands 13134 C 5875 5875
109 Netherlands 13135 A 5875 5875
110 Netherlands 13136 A G 5875 5873 Ile4291Val
111 Netherlands 13137 T 5874 5874
112 Netherlands 13138 C 5874 5874
113 Netherlands 13139 A 5874 5874
114 Netherlands 13140 C 5874 5874
115 Netherlands 13141 T 5874 5874
116 Netherlands 13142 A 5874 5874
117 Netherlands 13143 A 5874 5874
118 Netherlands 13144 T C 5874 5873 Asn4293Asn
119 Netherlands 13145 T 5874 5874
120 Netherlands 13146 G 5874 5874
121 Netherlands 13147 T 5874 5874
122 Netherlands 13148 G 5874 5874
123 Netherlands 13149 T 5874 5874
124 Netherlands 13150 T 5874 5874
125 Netherlands 13151 A 5874 5874
126 Netherlands 13152 A 5874 5874
127 Netherlands 13153 G 5874 5874
128 Netherlands 13154 A 5874 5874
129 Netherlands 13155 T 5874 5874
130 Netherlands 13156 G 5874 5874
131 Netherlands 13157 T 5874 5874
132 Netherlands 13158 T 5874 5874
133 Netherlands 13159 G 5874 5874
134 Netherlands 13160 T 5874 5874
135 Netherlands 13161 G 5874 5874
136 Netherlands 13162 T 5874 5874
137 Netherlands 13163 A 5874 5874
138 Netherlands 13164 C 5874 5874
139 Netherlands 13165 A G 5874 5873 Thr4300Thr
140 Netherlands 13166 C 5874 5874
141 Netherlands 13167 A 5874 5874
142 Netherlands 13168 C T 5874 5871 His4301His
143 Netherlands 13169 A 5874 5874
144 Netherlands 13170 C 5874 5874
145 Netherlands 13171 T 5874 5874
146 Netherlands 13172 G 5874 5874
147 Netherlands 13173 G 5874 5874
148 Netherlands 13174 T 5874 5874
149 Netherlands 13175 A 5874 5874
150 Netherlands 13176 C T 5874 5873 Thr4304Ile
151 Netherlands 13177 T 5874 5874
152 Netherlands 13178 G 5874 5874
153 Netherlands 13179 G 5874 5874
154 Netherlands 13180 T G,C 5874 5872 Gly4305Gly-p.Gly4305Gly
155 Netherlands 13181 C 5874 5874
156 Netherlands 13182 A 5874 5874
157 Netherlands 13183 G 5874 5874
158 Netherlands 13184 G 5874 5874
159 Netherlands 13185 C 5874 5874
160 Netherlands 13186 A 5874 5874
161 Netherlands 13187 A G 5874 5873 Ile4308Val
162 Netherlands 13188 T C 5874 5873 Ile4308Thr
163 Netherlands 13189 A 5874 5874
164 Netherlands 13190 A 5874 5874
165 Netherlands 13191 C 5874 5874
166 Netherlands 13192 A 5874 5874
167 Netherlands 13193 G 5874 5874
168 Netherlands 13194 T 5874 5874
169 Netherlands 13195 T 5874 5874
170 Netherlands 13196 A 5874 5874
171 Netherlands 13197 C 5874 5874
172 Netherlands 13198 A 5874 5874
173 Netherlands 13199 C 5874 5874
174 Netherlands 13200 C 5874 5874
175 Netherlands 13201 G A,T 5874 5868 Pro4312Pro-p.Pro4312Pro
176 Netherlands 13202 G 5874 5874
177 Netherlands 13203 A 5874 5874
178 Netherlands 13204 A 5874 5874
179 Netherlands 13205 G T 5874 5873 Ala4314Ser
180 Netherlands 13206 C 5874 5874
181 Netherlands 13207 C 5874 5874
182 Netherlands 13208 A 5874 5874
183 Netherlands 13209 A G 5874 5873 Asn4315Ser
184 Netherlands 13210 T C,A 5874 5872 Asn4315Lys-p.Asn4315Asn
185 Netherlands 13211 A 5874 5874
186 Netherlands 13212 T 5874 5874
187 Netherlands 13213 G 5874 5874
188 Netherlands 13214 G T 5874 5873 Asp4317Tyr
189 Netherlands 13215 A 5874 5874
190 Netherlands 13216 T 5874 5874
191 Netherlands 13217 C 5874 5874
192 Netherlands 13218 A 5874 5874
193 Netherlands 13219 A 5874 5874
194 Netherlands 13220 G 5874 5874
195 Netherlands 13221 A 5874 5874
196 Netherlands 13222 A 5874 5874
197 Netherlands 13223 T 5874 5874
198 Netherlands 13224 C 5874 5874
199 Netherlands 13225 C T 5874 5867 Ser4320Ser
200 Netherlands 13226 T 5874 5874
201 Netherlands 13227 T 5874 5874
202 Netherlands 13228 T 5874 5874
203 Netherlands 13229 G 5874 5874
204 Netherlands 13230 G 5874 5874
205 Netherlands 13231 T 5874 5874
206 Netherlands 13232 G 5874 5874
207 Netherlands 13233 G 5874 5874
208 Netherlands 13234 T 5874 5874
209 Netherlands 13235 G 5874 5874
210 Netherlands 13236 C 5874 5874
211 Netherlands 13237 A G 5874 5873 Ala4324Ala
212 Netherlands 13238 T 5874 5874
213 Netherlands 13239 C 5874 5874
214 Netherlands 13240 G 5874 5874
215 Netherlands 13241 T 5874 5874
216 Netherlands 13242 G T 5874 5873 Cys4326Phe
217 Netherlands 13243 T 5874 5874
218 Netherlands 13244 T 5874 5874
219 Netherlands 13245 G 5874 5874
220 Netherlands 13246 T 5874 5874
221 Netherlands 13247 C 5874 5874
222 Netherlands 13248 T 5874 5874
223 Netherlands 13249 G 5874 5874
224 Netherlands 13250 T 5874 5874
225 Netherlands 13251 A 5874 5874
226 Netherlands 13252 C 5874 5874
227 Netherlands 13253 T 5874 5874
228 Netherlands 13254 G 5874 5874
229 Netherlands 13255 C 5874 5874
230 Netherlands 13256 C 5874 5874
231 Netherlands 13257 G 5874 5874
232 Netherlands 13258 T C 5874 5873 Arg4331Arg
233 Netherlands 13259 T 5874 5874
234 Netherlands 13260 G 5874 5874
235 Netherlands 13261 C T 5874 5861 Cys4332Cys
236 Netherlands 13262 C 5874 5874
237 Netherlands 13263 A 5874 5874
238 Netherlands 13264 C T 5874 5873 His4333His
239 Netherlands 13265 A 5874 5874
240 Netherlands 13266 T 5874 5874
241 Netherlands 13267 A 5874 5874
242 Netherlands 13268 G 5874 5874
243 Netherlands 13269 A 5874 5874
244 Netherlands 13270 T 5874 5874
245 Netherlands 13271 C 5874 5874
246 Netherlands 13272 A 5874 5874
247 Netherlands 13273 T C 5874 5872 His4336His
248 Netherlands 13274 C 5874 5874
249 Netherlands 13275 C T 5874 5873 Pro4337Leu
250 Netherlands 13276 A 5874 5874
251 Netherlands 13277 A 5874 5874
252 Netherlands 13278 A G 5874 5842 Asn4338Ser
253 Netherlands 13279 T 5874 5874
254 Netherlands 13280 C T 5874 5872 Pro4339Ser
255 Netherlands 13281 C 5874 5874
256 Netherlands 13282 T 5874 5874
257 Netherlands 13283 A 5874 5874
258 Netherlands 13284 A 5874 5874
259 Netherlands 13285 A 5874 5874
260 Netherlands 13286 G 5874 5874
261 Netherlands 13287 G 5874 5874
262 Netherlands 13288 A 5874 5874
263 Netherlands 13289 T 5874 5874
264 Netherlands 13290 T 5874 5874
265 Netherlands 13291 T 5874 5874
266 Netherlands 13292 T 5874 5874
267 Netherlands 13293 G 5874 5874
268 Netherlands 13294 T 5874 5874
269 Netherlands 13295 G 5874 5874
270 Netherlands 13296 A 5874 5874
271 Netherlands 13297 C T 5874 5864 Asp4344Asp
272 Netherlands 13298 T 5875 5875
273 Netherlands 13299 T 5875 5875
274 Netherlands 13300 A 5875 5875
275 Netherlands 13301 A 5875 5875
276 Netherlands 13302 A 5875 5875
277 Netherlands 13303 A 5875 5875
278 Netherlands 13304 G 5875 5875
279 Netherlands 13305 G 5875 5875
280 Netherlands 13306 T 5875 5875
281 Netherlands 13307 A 5875 5875
282 Netherlands 13308 A G 5875 5869 Lys4348Arg
283 Netherlands 13309 G T 5875 5874 Lys4348Asn
284 Netherlands 13310 T 5875 5875
285 Netherlands 13311 A 5875 5875
286 Netherlands 13312 T 5875 5875
287 Netherlands 13313 G 5875 5875
288 Netherlands 13314 T 5875 5875
289 Netherlands 13315 A G 5875 5869 Val4350Val
290 Netherlands 13316 C 5875 5875
291 Netherlands 13317 A 5875 5875
292 Netherlands 13318 A 5875 5875
293 Netherlands 13319 A 5875 5875
294 Netherlands 13320 T 5875 5875
295 Netherlands 13321 A 5875 5875
296 Netherlands 13322 C 5875 5875
297 Netherlands 13323 C 5875 5875
298 Netherlands 13324 T 5875 5875
299 Netherlands 13325 A 5876 5876
300 Netherlands 13326 C 5876 5876
301 Netherlands 13327 A 5876 5876
302 Netherlands 13328 A 5876 5876
303 Netherlands 13329 C 5878 5878
304 Netherlands 13330 T 5878 5878
305 Netherlands 13331 T 5878 5878
306 Netherlands 13332 G 5878 5878
307 Netherlands 13333 T 5878 5878
308 Netherlands 13334 G 5878 5878
309 Netherlands 13335 C T 5878 5868 Ala4357Val
310 Netherlands 13336 T 5878 5878
311 Netherlands 13337 A 5881 5881
312 Netherlands 13338 A 5881 5881
313 Netherlands 13339 T 5881 5881
314 Netherlands 13340 G 5881 5881
315 Netherlands 13341 A 5881 5881
316 Netherlands 13342 C 5881 5881
317 Netherlands 13343 C 5881 5881
318 Netherlands 13344 C 5881 5881
319 Netherlands 13345 T 5881 5881
320 Netherlands 13346 G 5881 5881
321 Netherlands 13347 T 5881 5881
322 Netherlands 13348 G 5881 5881
323 Netherlands 13349 G 5881 5881
324 Netherlands 13350 G 5881 5881
325 Netherlands 13351 T C 5881 5880 Gly4362Gly
326 Netherlands 13352 T 5881 5881
327 Netherlands 13353 T 5881 5881
328 Netherlands 13354 T 5881 5881
329 Netherlands 13355 A 5881 5881
330 Netherlands 13356 C T 5881 5880 Thr4364Ile
331 Netherlands 13357 A 5881 5881
332 Netherlands 13358 C T 5881 5879 Leu4365Phe
333 Netherlands 13359 T 5881 5881
334 Netherlands 13360 T 5881 5881
335 Netherlands 13361 A 5881 5881
336 Netherlands 13362 A 5881 5881
337 Netherlands 13363 A 5881 5881
338 Netherlands 13364 A 5881 5881
339 Netherlands 13365 A 5881 5881
340 Netherlands 13366 C T 5881 5880 Asn4367Asn
341 Netherlands 13367 A 5881 5881
342 Netherlands 13368 C T 5881 5880 Thr4368Ile
343 Netherlands 13369 A 5881 5881
344 Netherlands 13370 G A 5881 5880 Val4369Ile
345 Netherlands 13371 T 5881 5881
346 Netherlands 13372 C T 5881 5880 Val4369Val
347 Netherlands 13373 T 5881 5881
348 Netherlands 13374 G 5881 5881
349 Netherlands 13375 T 5881 5881
350 Netherlands 13376 A 5881 5881
351 Netherlands 13377 C A 5881 5880 Thr4371Asn
352 Netherlands 13378 C 5881 5881
353 Netherlands 13379 G 5881 5881
354 Netherlands 13380 T 5881 5881
355 Netherlands 13381 C T,G 5881 5877 Val4372Val-p.Val4372Val
356 Netherlands 13382 T 5881 5881
357 Netherlands 13383 G 5880 5880
358 Netherlands 13384 C T 5880 5879 Cys4373Cys
359 Netherlands 13385 G 5880 5880
360 Netherlands 13386 G 5880 5880
361 Netherlands 13387 T 5880 5880
362 Netherlands 13388 A 5880 5880
363 Netherlands 13389 T 5880 5880
364 Netherlands 13390 G T 5880 5879 Met4375Ile
365 Netherlands 13391 T 5880 5880
366 Netherlands 13392 G 5880 5880
367 Netherlands 13393 G 5880 5880
368 Netherlands 13394 A 5880 5880
369 Netherlands 13395 A 5880 5880
370 Netherlands 13396 A 5880 5880
371 Netherlands 13397 G 5880 5880
372 Netherlands 13398 G 5880 5880
373 Netherlands 13399 T 5880 5880
374 Netherlands 13400 T 5880 5880
375 Netherlands 13401 A 5880 5880
376 Netherlands 13402 T 5880 5880
377 Netherlands 13403 G 5880 5880
378 Netherlands 13404 G 5880 5880
379 Netherlands 13405 C 5880 5880
380 Netherlands 13406 T 5880 5880
381 Netherlands 13407 G 5880 5880
382 Netherlands 13408 T 5880 5880
383 Netherlands 13409 A 5880 5880
384 Netherlands 13410 G T 5880 5879 Ser4382Ile
385 Netherlands 13411 T 5880 5880
386 Netherlands 13412 T 5880 5880
387 Netherlands 13413 G 5880 5880
388 Netherlands 13414 T C 5880 5879 Cys4383Cys
389 Netherlands 13415 G 5880 5880
390 Netherlands 13416 A 5880 5880
391 Netherlands 13417 T 5880 5880
392 Netherlands 13418 C 5880 5880
393 Netherlands 13419 A 5880 5880
394 Netherlands 13420 A 5880 5880
395 Netherlands 13421 C 5880 5880
396 Netherlands 13422 T 5880 5880
397 Netherlands 13423 C 5880 5880
398 Netherlands 13424 C T 5880 5877 Arg4387Cys
399 Netherlands 13425 G A 5880 5879 Arg4387His
400 Netherlands 13426 C T 5880 5873 Arg4387Arg
401 Netherlands 13427 G 5879 5879
402 Netherlands 13428 A 5879 5879
403 Netherlands 13429 A 5879 5879
404 Netherlands 13430 C T 5879 5878 Pro4389Ser
405 Netherlands 13431 C 5879 5879
406 Netherlands 13432 C 5879 5879
407 Netherlands 13433 A 5879 5879
408 Netherlands 13434 T 5879 5879
409 Netherlands 13435 G 5879 5879
410 Netherlands 13436 C 5879 5879
411 Netherlands 13437 T 5879 5879
412 Netherlands 13438 T C 5879 5877 Leu4391Leu
413 Netherlands 13439 C 5877 5877
414 Netherlands 13440 A 5876 5876
415 Netherlands 13441 G 5876 5876