National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Nepal 13026 C 15 15
1 Nepal 13027 T 15 15
2 Nepal 13028 G 15 15
3 Nepal 13029 G 15 15
4 Nepal 13030 T 15 15
5 Nepal 13031 A 15 15
6 Nepal 13032 A 15 15
7 Nepal 13033 T 15 15
8 Nepal 13034 G 15 15
9 Nepal 13035 C 15 15
10 Nepal 13036 A 15 15
11 Nepal 13037 A 15 15
12 Nepal 13038 C 15 15
13 Nepal 13039 A 15 15
14 Nepal 13040 G 15 15
15 Nepal 13041 A 15 15
16 Nepal 13042 A 15 15
17 Nepal 13043 G 15 15
18 Nepal 13044 T 15 15
19 Nepal 13045 G 15 15
20 Nepal 13046 C 15 15
21 Nepal 13047 C 15 15
22 Nepal 13048 T 15 15
23 Nepal 13049 G 15 15
24 Nepal 13050 C 15 15
25 Nepal 13051 C 15 15
26 Nepal 13052 A 15 15
27 Nepal 13053 A 15 15
28 Nepal 13054 T 15 15
29 Nepal 13055 T 15 15
30 Nepal 13056 C 15 15
31 Nepal 13057 A 15 15
32 Nepal 13058 A 15 15
33 Nepal 13059 C 15 15
34 Nepal 13060 T 15 15
35 Nepal 13061 G 15 15
36 Nepal 13062 T 15 15
37 Nepal 13063 A 15 15
38 Nepal 13064 T 15 15
39 Nepal 13065 T 15 15
40 Nepal 13066 A 15 15
41 Nepal 13067 T 15 15
42 Nepal 13068 C 15 15
43 Nepal 13069 T 15 15
44 Nepal 13070 T 15 15
45 Nepal 13071 T 15 15
46 Nepal 13072 C 15 15
47 Nepal 13073 T 15 15
48 Nepal 13074 G 15 15
49 Nepal 13075 T 15 15
50 Nepal 13076 G 15 15
51 Nepal 13077 C 15 15
52 Nepal 13078 T 15 15
53 Nepal 13079 T 15 15
54 Nepal 13080 T 15 15
55 Nepal 13081 T 15 15
56 Nepal 13082 G 15 15
57 Nepal 13083 C 15 15
58 Nepal 13084 T 15 15
59 Nepal 13085 G 15 15
60 Nepal 13086 T 15 15
61 Nepal 13087 A 15 15
62 Nepal 13088 G 15 15
63 Nepal 13089 A 15 15
64 Nepal 13090 T 15 15
65 Nepal 13091 G 15 15
66 Nepal 13092 C 15 15
67 Nepal 13093 T 15 15
68 Nepal 13094 G 15 15
69 Nepal 13095 C 15 15
70 Nepal 13096 T 15 15
71 Nepal 13097 A 15 15
72 Nepal 13098 A 15 15
73 Nepal 13099 A 15 15
74 Nepal 13100 G 15 15
75 Nepal 13101 C 15 15
76 Nepal 13102 T 15 15
77 Nepal 13103 T 15 15
78 Nepal 13104 A 15 15
79 Nepal 13105 C 15 15
80 Nepal 13106 A 15 15
81 Nepal 13107 A 15 15
82 Nepal 13108 A 15 15
83 Nepal 13109 G 15 15
84 Nepal 13110 A 15 15
85 Nepal 13111 T 15 15
86 Nepal 13112 T 15 15
87 Nepal 13113 A 15 15
88 Nepal 13114 T 15 15
89 Nepal 13115 C 15 15
90 Nepal 13116 T 15 15
91 Nepal 13117 A 15 15
92 Nepal 13118 G 15 15
93 Nepal 13119 C 15 15
94 Nepal 13120 T 15 15
95 Nepal 13121 A 15 15
96 Nepal 13122 G 15 15
97 Nepal 13123 T 15 15
98 Nepal 13124 G 15 15
99 Nepal 13125 G 15 15
100 Nepal 13126 G 15 15
101 Nepal 13127 G 15 15
102 Nepal 13128 G 15 15
103 Nepal 13129 A 15 15
104 Nepal 13130 C 15 15
105 Nepal 13131 A 15 15
106 Nepal 13132 A 15 15
107 Nepal 13133 C 15 15
108 Nepal 13134 C 15 15
109 Nepal 13135 A 15 15
110 Nepal 13136 A 15 15
111 Nepal 13137 T 15 15
112 Nepal 13138 C 15 15
113 Nepal 13139 A 15 15
114 Nepal 13140 C 15 15
115 Nepal 13141 T 15 15
116 Nepal 13142 A 15 15
117 Nepal 13143 A 15 15
118 Nepal 13144 T 15 15
119 Nepal 13145 T 15 15
120 Nepal 13146 G 15 15
121 Nepal 13147 T 15 15
122 Nepal 13148 G 15 15
123 Nepal 13149 T 15 15
124 Nepal 13150 T 15 15
125 Nepal 13151 A 15 15
126 Nepal 13152 A 15 15
127 Nepal 13153 G 15 15
128 Nepal 13154 A 15 15
129 Nepal 13155 T 15 15
130 Nepal 13156 G 15 15
131 Nepal 13157 T 15 15
132 Nepal 13158 T 15 15
133 Nepal 13159 G 15 15
134 Nepal 13160 T 15 15
135 Nepal 13161 G 15 15
136 Nepal 13162 T 15 15
137 Nepal 13163 A 15 15
138 Nepal 13164 C 15 15
139 Nepal 13165 A 15 15
140 Nepal 13166 C 15 15
141 Nepal 13167 A 15 15
142 Nepal 13168 C 15 15
143 Nepal 13169 A 15 15
144 Nepal 13170 C 15 15
145 Nepal 13171 T 15 15
146 Nepal 13172 G 15 15
147 Nepal 13173 G 15 15
148 Nepal 13174 T 15 15
149 Nepal 13175 A 15 15
150 Nepal 13176 C 15 15
151 Nepal 13177 T 15 15
152 Nepal 13178 G 15 15
153 Nepal 13179 G 15 15
154 Nepal 13180 T 15 15
155 Nepal 13181 C 15 15
156 Nepal 13182 A 15 15
157 Nepal 13183 G 15 15
158 Nepal 13184 G 15 15
159 Nepal 13185 C 15 15
160 Nepal 13186 A 15 15
161 Nepal 13187 A 15 15
162 Nepal 13188 T 15 15
163 Nepal 13189 A 15 15
164 Nepal 13190 A 15 15
165 Nepal 13191 C 15 15
166 Nepal 13192 A 15 15
167 Nepal 13193 G 15 15
168 Nepal 13194 T 15 15
169 Nepal 13195 T 15 15
170 Nepal 13196 A 15 15
171 Nepal 13197 C 15 15
172 Nepal 13198 A 15 15
173 Nepal 13199 C 15 15
174 Nepal 13200 C 15 15
175 Nepal 13201 G 15 15
176 Nepal 13202 G 15 15
177 Nepal 13203 A 15 15
178 Nepal 13204 A 15 15
179 Nepal 13205 G 15 15
180 Nepal 13206 C 15 15
181 Nepal 13207 C 15 15
182 Nepal 13208 A 15 15
183 Nepal 13209 A 15 15
184 Nepal 13210 T 15 15
185 Nepal 13211 A 15 15
186 Nepal 13212 T 15 15
187 Nepal 13213 G 15 15
188 Nepal 13214 G 15 15
189 Nepal 13215 A 15 15
190 Nepal 13216 T 15 15
191 Nepal 13217 C 15 15
192 Nepal 13218 A 15 15
193 Nepal 13219 A 15 15
194 Nepal 13220 G 15 15
195 Nepal 13221 A 15 15
196 Nepal 13222 A 15 15
197 Nepal 13223 T 15 15
198 Nepal 13224 C 15 15
199 Nepal 13225 C 15 15
200 Nepal 13226 T 15 15
201 Nepal 13227 T 15 15
202 Nepal 13228 T 15 15
203 Nepal 13229 G 15 15
204 Nepal 13230 G 15 15
205 Nepal 13231 T 15 15
206 Nepal 13232 G 15 15
207 Nepal 13233 G 15 15
208 Nepal 13234 T 15 15
209 Nepal 13235 G 15 15
210 Nepal 13236 C 15 15
211 Nepal 13237 A 15 15
212 Nepal 13238 T 15 15
213 Nepal 13239 C 15 15
214 Nepal 13240 G 15 15
215 Nepal 13241 T 15 15
216 Nepal 13242 G 15 15
217 Nepal 13243 T 15 15
218 Nepal 13244 T 15 15
219 Nepal 13245 G 15 15
220 Nepal 13246 T 15 15
221 Nepal 13247 C 15 15
222 Nepal 13248 T 15 15
223 Nepal 13249 G 15 15
224 Nepal 13250 T 15 15
225 Nepal 13251 A 15 15
226 Nepal 13252 C 15 15
227 Nepal 13253 T 15 15
228 Nepal 13254 G 15 15
229 Nepal 13255 C 15 15
230 Nepal 13256 C 15 15
231 Nepal 13257 G 15 15
232 Nepal 13258 T 15 15
233 Nepal 13259 T 15 15
234 Nepal 13260 G 15 15
235 Nepal 13261 C 15 15
236 Nepal 13262 C 15 15
237 Nepal 13263 A 15 15
238 Nepal 13264 C 15 15
239 Nepal 13265 A 15 15
240 Nepal 13266 T 15 15
241 Nepal 13267 A 15 15
242 Nepal 13268 G 15 15
243 Nepal 13269 A 15 15
244 Nepal 13270 T 15 15
245 Nepal 13271 C 15 15
246 Nepal 13272 A 15 15
247 Nepal 13273 T 15 15
248 Nepal 13274 C 15 15
249 Nepal 13275 C 15 15
250 Nepal 13276 A 15 15
251 Nepal 13277 A 15 15
252 Nepal 13278 A 15 15
253 Nepal 13279 T 15 15
254 Nepal 13280 C 15 15
255 Nepal 13281 C 15 15
256 Nepal 13282 T 15 15
257 Nepal 13283 A 15 15
258 Nepal 13284 A 15 15
259 Nepal 13285 A 15 15
260 Nepal 13286 G 15 15
261 Nepal 13287 G 15 15
262 Nepal 13288 A 15 15
263 Nepal 13289 T 15 15
264 Nepal 13290 T 15 15
265 Nepal 13291 T 15 15
266 Nepal 13292 T 15 15
267 Nepal 13293 G 15 15
268 Nepal 13294 T 15 15
269 Nepal 13295 G 15 15
270 Nepal 13296 A 15 15
271 Nepal 13297 C 15 15
272 Nepal 13298 T 15 15
273 Nepal 13299 T 15 15
274 Nepal 13300 A 15 15
275 Nepal 13301 A 15 15
276 Nepal 13302 A 15 15
277 Nepal 13303 A 15 15
278 Nepal 13304 G 15 15
279 Nepal 13305 G 15 15
280 Nepal 13306 T 15 15
281 Nepal 13307 A 15 15
282 Nepal 13308 A 15 15
283 Nepal 13309 G 15 15
284 Nepal 13310 T 15 15
285 Nepal 13311 A 15 15
286 Nepal 13312 T 15 15
287 Nepal 13313 G 15 15
288 Nepal 13314 T 15 15
289 Nepal 13315 A 15 15
290 Nepal 13316 C 15 15
291 Nepal 13317 A 15 15
292 Nepal 13318 A 15 15
293 Nepal 13319 A 15 15
294 Nepal 13320 T 15 15
295 Nepal 13321 A 15 15
296 Nepal 13322 C 15 15
297 Nepal 13323 C 15 15
298 Nepal 13324 T 15 15
299 Nepal 13325 A 15 15
300 Nepal 13326 C 15 15
301 Nepal 13327 A 15 15
302 Nepal 13328 A 15 15
303 Nepal 13329 C 15 15
304 Nepal 13330 T 15 15
305 Nepal 13331 T 15 15
306 Nepal 13332 G 15 15
307 Nepal 13333 T 15 15
308 Nepal 13334 G 15 15
309 Nepal 13335 C 15 15
310 Nepal 13336 T 15 15
311 Nepal 13337 A 15 15
312 Nepal 13338 A 15 15
313 Nepal 13339 T 15 15
314 Nepal 13340 G 15 15
315 Nepal 13341 A 15 15
316 Nepal 13342 C 15 15
317 Nepal 13343 C 15 15
318 Nepal 13344 C 15 15
319 Nepal 13345 T 15 15
320 Nepal 13346 G 15 15
321 Nepal 13347 T 15 15
322 Nepal 13348 G 15 15
323 Nepal 13349 G 15 15
324 Nepal 13350 G 15 15
325 Nepal 13351 T 15 15
326 Nepal 13352 T 15 15
327 Nepal 13353 T 15 15
328 Nepal 13354 T 15 15
329 Nepal 13355 A 15 15
330 Nepal 13356 C 15 15
331 Nepal 13357 A 15 15
332 Nepal 13358 C 15 15
333 Nepal 13359 T 15 15
334 Nepal 13360 T 15 15
335 Nepal 13361 A 15 15
336 Nepal 13362 A 15 15
337 Nepal 13363 A 15 15
338 Nepal 13364 A 15 15
339 Nepal 13365 A 15 15
340 Nepal 13366 C 15 15
341 Nepal 13367 A 15 15
342 Nepal 13368 C 15 15
343 Nepal 13369 A 15 15
344 Nepal 13370 G 15 15
345 Nepal 13371 T 15 15
346 Nepal 13372 C 15 15
347 Nepal 13373 T 15 15
348 Nepal 13374 G 15 15
349 Nepal 13375 T 15 15
350 Nepal 13376 A 15 15
351 Nepal 13377 C 15 15
352 Nepal 13378 C 15 15
353 Nepal 13379 G 15 15
354 Nepal 13380 T 15 15
355 Nepal 13381 C 15 15
356 Nepal 13382 T 15 15
357 Nepal 13383 G 15 15
358 Nepal 13384 C 15 15
359 Nepal 13385 G 15 15
360 Nepal 13386 G 15 15
361 Nepal 13387 T 15 15
362 Nepal 13388 A 15 15
363 Nepal 13389 T 15 15
364 Nepal 13390 G 15 15
365 Nepal 13391 T 15 15
366 Nepal 13392 G 15 15
367 Nepal 13393 G 15 15
368 Nepal 13394 A 15 15
369 Nepal 13395 A 15 15
370 Nepal 13396 A 15 15
371 Nepal 13397 G 15 15
372 Nepal 13398 G 15 15
373 Nepal 13399 T 15 15
374 Nepal 13400 T 15 15
375 Nepal 13401 A 15 15
376 Nepal 13402 T 15 15
377 Nepal 13403 G 15 15
378 Nepal 13404 G 15 15
379 Nepal 13405 C 15 15
380 Nepal 13406 T 15 15
381 Nepal 13407 G 15 15
382 Nepal 13408 T 15 15
383 Nepal 13409 A 15 15
384 Nepal 13410 G 15 15
385 Nepal 13411 T 15 15
386 Nepal 13412 T 15 15
387 Nepal 13413 G 15 15
388 Nepal 13414 T 15 15
389 Nepal 13415 G 15 15
390 Nepal 13416 A 15 15
391 Nepal 13417 T 15 15
392 Nepal 13418 C 15 15
393 Nepal 13419 A 15 15
394 Nepal 13420 A 15 15
395 Nepal 13421 C 15 15
396 Nepal 13422 T 15 15
397 Nepal 13423 C 15 15
398 Nepal 13424 C 15 15
399 Nepal 13425 G 15 15
400 Nepal 13426 C 15 15
401 Nepal 13427 G 15 15
402 Nepal 13428 A 15 15
403 Nepal 13429 A 15 15
404 Nepal 13430 C 15 15
405 Nepal 13431 C 15 15
406 Nepal 13432 C 15 15
407 Nepal 13433 A 15 15
408 Nepal 13434 T 15 15
409 Nepal 13435 G 15 15
410 Nepal 13436 C 15 15
411 Nepal 13437 T 15 15
412 Nepal 13438 T 15 15
413 Nepal 13439 C 15 15
414 Nepal 13440 A 15 15
415 Nepal 13441 G 15 15