National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                   1                    
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Myanmar 13026 C 41 41
1 Myanmar 13027 T 41 41
2 Myanmar 13028 G 41 41
3 Myanmar 13029 G 41 41
4 Myanmar 13030 T 41 41
5 Myanmar 13031 A 41 41
6 Myanmar 13032 A 41 41
7 Myanmar 13033 T 41 41
8 Myanmar 13034 G 41 41
9 Myanmar 13035 C 41 41
10 Myanmar 13036 A 41 41
11 Myanmar 13037 A 41 41
12 Myanmar 13038 C 41 41
13 Myanmar 13039 A 41 41
14 Myanmar 13040 G 41 41
15 Myanmar 13041 A 41 41
16 Myanmar 13042 A 41 41
17 Myanmar 13043 G 41 41
18 Myanmar 13044 T 41 41
19 Myanmar 13045 G 41 41
20 Myanmar 13046 C 41 41
21 Myanmar 13047 C T 41 40 Pro4261Leu
22 Myanmar 13048 T 41 41
23 Myanmar 13049 G 41 41
24 Myanmar 13050 C 41 41
25 Myanmar 13051 C 41 41
26 Myanmar 13052 A 41 41
27 Myanmar 13053 A 41 41
28 Myanmar 13054 T 41 41
29 Myanmar 13055 T 41 41
30 Myanmar 13056 C 41 41
31 Myanmar 13057 A 41 41
32 Myanmar 13058 A 41 41
33 Myanmar 13059 C 41 41
34 Myanmar 13060 T 41 41
35 Myanmar 13061 G 41 41
36 Myanmar 13062 T 41 41
37 Myanmar 13063 A 41 41
38 Myanmar 13064 T 41 41
39 Myanmar 13065 T 41 41
40 Myanmar 13066 A 41 41
41 Myanmar 13067 T 41 41
42 Myanmar 13068 C 41 41
43 Myanmar 13069 T 41 41
44 Myanmar 13070 T 41 41
45 Myanmar 13071 T 41 41
46 Myanmar 13072 C 41 41
47 Myanmar 13073 T 41 41
48 Myanmar 13074 G 41 41
49 Myanmar 13075 T 41 41
50 Myanmar 13076 G 41 41
51 Myanmar 13077 C 41 41
52 Myanmar 13078 T 41 41
53 Myanmar 13079 T 41 41
54 Myanmar 13080 T 41 41
55 Myanmar 13081 T 41 41
56 Myanmar 13082 G 41 41
57 Myanmar 13083 C 41 41
58 Myanmar 13084 T 41 41
59 Myanmar 13085 G 41 41
60 Myanmar 13086 T 41 41
61 Myanmar 13087 A 41 41
62 Myanmar 13088 G 41 41
63 Myanmar 13089 A 41 41
64 Myanmar 13090 T 41 41
65 Myanmar 13091 G 41 41
66 Myanmar 13092 C 41 41
67 Myanmar 13093 T 41 41
68 Myanmar 13094 G 41 41
69 Myanmar 13095 C 41 41
70 Myanmar 13096 T 41 41
71 Myanmar 13097 A 41 41
72 Myanmar 13098 A 41 41
73 Myanmar 13099 A 41 41
74 Myanmar 13100 G 41 41
75 Myanmar 13101 C 41 41
76 Myanmar 13102 T 41 41
77 Myanmar 13103 T 41 41
78 Myanmar 13104 A 41 41
79 Myanmar 13105 C 41 41
80 Myanmar 13106 A 41 41
81 Myanmar 13107 A 41 41
82 Myanmar 13108 A 41 41
83 Myanmar 13109 G 41 41
84 Myanmar 13110 A 41 41
85 Myanmar 13111 T 41 41
86 Myanmar 13112 T 41 41
87 Myanmar 13113 A 41 41
88 Myanmar 13114 T 41 41
89 Myanmar 13115 C 41 41
90 Myanmar 13116 T 41 41
91 Myanmar 13117 A 41 41
92 Myanmar 13118 G 41 41
93 Myanmar 13119 C 41 41
94 Myanmar 13120 T 41 41
95 Myanmar 13121 A 41 41
96 Myanmar 13122 G 41 41
97 Myanmar 13123 T 41 41
98 Myanmar 13124 G 41 41
99 Myanmar 13125 G 41 41
100 Myanmar 13126 G 41 41
101 Myanmar 13127 G 41 41
102 Myanmar 13128 G 41 41
103 Myanmar 13129 A 41 41
104 Myanmar 13130 C 41 41
105 Myanmar 13131 A 41 41
106 Myanmar 13132 A 41 41
107 Myanmar 13133 C 41 41
108 Myanmar 13134 C 41 41
109 Myanmar 13135 A 41 41
110 Myanmar 13136 A 41 41
111 Myanmar 13137 T 41 41
112 Myanmar 13138 C 41 41
113 Myanmar 13139 A 41 41
114 Myanmar 13140 C 41 41
115 Myanmar 13141 T 41 41
116 Myanmar 13142 A 41 41
117 Myanmar 13143 A 41 41
118 Myanmar 13144 T 41 41
119 Myanmar 13145 T 41 41
120 Myanmar 13146 G 41 41
121 Myanmar 13147 T 41 41
122 Myanmar 13148 G 41 41
123 Myanmar 13149 T 41 41
124 Myanmar 13150 T 41 41
125 Myanmar 13151 A 41 41
126 Myanmar 13152 A 41 41
127 Myanmar 13153 G 41 41
128 Myanmar 13154 A 41 41
129 Myanmar 13155 T 41 41
130 Myanmar 13156 G 41 41
131 Myanmar 13157 T 41 41
132 Myanmar 13158 T 41 41
133 Myanmar 13159 G 41 41
134 Myanmar 13160 T 41 41
135 Myanmar 13161 G 41 41
136 Myanmar 13162 T 41 41
137 Myanmar 13163 A 41 41
138 Myanmar 13164 C 41 41
139 Myanmar 13165 A 41 41
140 Myanmar 13166 C 41 41
141 Myanmar 13167 A 41 41
142 Myanmar 13168 C 41 41
143 Myanmar 13169 A 41 41
144 Myanmar 13170 C 41 41
145 Myanmar 13171 T 41 41
146 Myanmar 13172 G 41 41
147 Myanmar 13173 G 41 41
148 Myanmar 13174 T 41 41
149 Myanmar 13175 A 41 41
150 Myanmar 13176 C 41 41
151 Myanmar 13177 T 41 41
152 Myanmar 13178 G 41 41
153 Myanmar 13179 G 41 41
154 Myanmar 13180 T 41 41
155 Myanmar 13181 C 41 41
156 Myanmar 13182 A 41 41
157 Myanmar 13183 G 41 41
158 Myanmar 13184 G 41 41
159 Myanmar 13185 C 41 41
160 Myanmar 13186 A 41 41
161 Myanmar 13187 A 41 41
162 Myanmar 13188 T 41 41
163 Myanmar 13189 A 41 41
164 Myanmar 13190 A 41 41
165 Myanmar 13191 C 41 41
166 Myanmar 13192 A 41 41
167 Myanmar 13193 G 41 41
168 Myanmar 13194 T 41 41
169 Myanmar 13195 T 41 41
170 Myanmar 13196 A 41 41
171 Myanmar 13197 C 41 41
172 Myanmar 13198 A 41 41
173 Myanmar 13199 C 41 41
174 Myanmar 13200 C 41 41
175 Myanmar 13201 G 41 41
176 Myanmar 13202 G 41 41
177 Myanmar 13203 A 41 41
178 Myanmar 13204 A 41 41
179 Myanmar 13205 G 41 41
180 Myanmar 13206 C 41 41
181 Myanmar 13207 C 41 41
182 Myanmar 13208 A 41 41
183 Myanmar 13209 A 41 41
184 Myanmar 13210 T 41 41
185 Myanmar 13211 A 41 41
186 Myanmar 13212 T 41 41
187 Myanmar 13213 G 41 41
188 Myanmar 13214 G 41 41
189 Myanmar 13215 A 41 41
190 Myanmar 13216 T 41 41
191 Myanmar 13217 C 41 41
192 Myanmar 13218 A 41 41
193 Myanmar 13219 A 41 41
194 Myanmar 13220 G 41 41
195 Myanmar 13221 A 41 41
196 Myanmar 13222 A 41 41
197 Myanmar 13223 T 41 41
198 Myanmar 13224 C 41 41
199 Myanmar 13225 C 41 41
200 Myanmar 13226 T 41 41
201 Myanmar 13227 T 41 41
202 Myanmar 13228 T 41 41
203 Myanmar 13229 G 41 41
204 Myanmar 13230 G 41 41
205 Myanmar 13231 T 41 41
206 Myanmar 13232 G 41 41
207 Myanmar 13233 G 41 41
208 Myanmar 13234 T 41 41
209 Myanmar 13235 G 41 41
210 Myanmar 13236 C 41 41
211 Myanmar 13237 A 41 41
212 Myanmar 13238 T 41 41
213 Myanmar 13239 C 41 41
214 Myanmar 13240 G 41 41
215 Myanmar 13241 T 41 41
216 Myanmar 13242 G 41 41
217 Myanmar 13243 T 41 41
218 Myanmar 13244 T 41 41
219 Myanmar 13245 G 41 41
220 Myanmar 13246 T 41 41
221 Myanmar 13247 C 41 41
222 Myanmar 13248 T 41 41
223 Myanmar 13249 G 41 41
224 Myanmar 13250 T 41 41
225 Myanmar 13251 A 41 41
226 Myanmar 13252 C 41 41
227 Myanmar 13253 T 41 41
228 Myanmar 13254 G 41 41
229 Myanmar 13255 C 41 41
230 Myanmar 13256 C 41 41
231 Myanmar 13257 G 41 41
232 Myanmar 13258 T 41 41
233 Myanmar 13259 T 41 41
234 Myanmar 13260 G 41 41
235 Myanmar 13261 C 41 41
236 Myanmar 13262 C 41 41
237 Myanmar 13263 A 41 41
238 Myanmar 13264 C 41 41
239 Myanmar 13265 A 41 41
240 Myanmar 13266 T 41 41
241 Myanmar 13267 A 41 41
242 Myanmar 13268 G 41 41
243 Myanmar 13269 A 41 41
244 Myanmar 13270 T 41 41
245 Myanmar 13271 C 41 41
246 Myanmar 13272 A 41 41
247 Myanmar 13273 T 41 41
248 Myanmar 13274 C 41 41
249 Myanmar 13275 C 41 41
250 Myanmar 13276 A 41 41
251 Myanmar 13277 A 41 41
252 Myanmar 13278 A 41 41
253 Myanmar 13279 T 41 41
254 Myanmar 13280 C 41 41
255 Myanmar 13281 C 41 41
256 Myanmar 13282 T 41 41
257 Myanmar 13283 A 41 41
258 Myanmar 13284 A 41 41
259 Myanmar 13285 A 41 41
260 Myanmar 13286 G 41 41
261 Myanmar 13287 G 41 41
262 Myanmar 13288 A 41 41
263 Myanmar 13289 T 41 41
264 Myanmar 13290 T 41 41
265 Myanmar 13291 T 41 41
266 Myanmar 13292 T 41 41
267 Myanmar 13293 G 41 41
268 Myanmar 13294 T 41 41
269 Myanmar 13295 G 41 41
270 Myanmar 13296 A 41 41
271 Myanmar 13297 C 41 41
272 Myanmar 13298 T 41 41
273 Myanmar 13299 T 41 41
274 Myanmar 13300 A 41 41
275 Myanmar 13301 A 41 41
276 Myanmar 13302 A 41 41
277 Myanmar 13303 A 41 41
278 Myanmar 13304 G 41 41
279 Myanmar 13305 G 41 41
280 Myanmar 13306 T 41 41
281 Myanmar 13307 A 41 41
282 Myanmar 13308 A 41 41
283 Myanmar 13309 G 41 41
284 Myanmar 13310 T 41 41
285 Myanmar 13311 A 41 41
286 Myanmar 13312 T 41 41
287 Myanmar 13313 G 41 41
288 Myanmar 13314 T 41 41
289 Myanmar 13315 A 41 41
290 Myanmar 13316 C 41 41
291 Myanmar 13317 A 41 41
292 Myanmar 13318 A 41 41
293 Myanmar 13319 A 41 41
294 Myanmar 13320 T 41 41
295 Myanmar 13321 A 41 41
296 Myanmar 13322 C 41 41
297 Myanmar 13323 C 41 41
298 Myanmar 13324 T 41 41
299 Myanmar 13325 A 41 41
300 Myanmar 13326 C 41 41
301 Myanmar 13327 A 41 41
302 Myanmar 13328 A 41 41
303 Myanmar 13329 C 41 41
304 Myanmar 13330 T 41 41
305 Myanmar 13331 T 41 41
306 Myanmar 13332 G 41 41
307 Myanmar 13333 T 41 41
308 Myanmar 13334 G 41 41
309 Myanmar 13335 C 41 41
310 Myanmar 13336 T 41 41
311 Myanmar 13337 A 41 41
312 Myanmar 13338 A 41 41
313 Myanmar 13339 T 41 41
314 Myanmar 13340 G 41 41
315 Myanmar 13341 A 41 41
316 Myanmar 13342 C 41 41
317 Myanmar 13343 C 41 41
318 Myanmar 13344 C 41 41
319 Myanmar 13345 T 41 41
320 Myanmar 13346 G 41 41
321 Myanmar 13347 T 41 41
322 Myanmar 13348 G 41 41
323 Myanmar 13349 G 41 41
324 Myanmar 13350 G 41 41
325 Myanmar 13351 T 41 41
326 Myanmar 13352 T 41 41
327 Myanmar 13353 T 41 41
328 Myanmar 13354 T 41 41
329 Myanmar 13355 A 41 41
330 Myanmar 13356 C 41 41
331 Myanmar 13357 A 41 41
332 Myanmar 13358 C 41 41
333 Myanmar 13359 T 41 41
334 Myanmar 13360 T 41 41
335 Myanmar 13361 A 41 41
336 Myanmar 13362 A 41 41
337 Myanmar 13363 A 41 41
338 Myanmar 13364 A 41 41
339 Myanmar 13365 A 41 41
340 Myanmar 13366 C 41 41
341 Myanmar 13367 A 41 41
342 Myanmar 13368 C 41 41
343 Myanmar 13369 A 41 41
344 Myanmar 13370 G 41 41
345 Myanmar 13371 T 41 41
346 Myanmar 13372 C 41 41
347 Myanmar 13373 T 41 41
348 Myanmar 13374 G 41 41
349 Myanmar 13375 T 41 41
350 Myanmar 13376 A 41 41
351 Myanmar 13377 C 41 41
352 Myanmar 13378 C 41 41
353 Myanmar 13379 G 41 41
354 Myanmar 13380 T 41 41
355 Myanmar 13381 C 41 41
356 Myanmar 13382 T 41 41
357 Myanmar 13383 G 41 41
358 Myanmar 13384 C 41 41
359 Myanmar 13385 G 41 41
360 Myanmar 13386 G 41 41
361 Myanmar 13387 T 41 41
362 Myanmar 13388 A 41 41
363 Myanmar 13389 T 41 41
364 Myanmar 13390 G 41 41
365 Myanmar 13391 T 41 41
366 Myanmar 13392 G 41 41
367 Myanmar 13393 G 41 41
368 Myanmar 13394 A 41 41
369 Myanmar 13395 A 41 41
370 Myanmar 13396 A 41 41
371 Myanmar 13397 G 41 41
372 Myanmar 13398 G 41 41
373 Myanmar 13399 T 41 41
374 Myanmar 13400 T 41 41
375 Myanmar 13401 A 41 41
376 Myanmar 13402 T 41 41
377 Myanmar 13403 G 41 41
378 Myanmar 13404 G 41 41
379 Myanmar 13405 C 41 41
380 Myanmar 13406 T 41 41
381 Myanmar 13407 G 41 41
382 Myanmar 13408 T 41 41
383 Myanmar 13409 A 41 41
384 Myanmar 13410 G 41 41
385 Myanmar 13411 T 41 41
386 Myanmar 13412 T 41 41
387 Myanmar 13413 G 41 41
388 Myanmar 13414 T 41 41
389 Myanmar 13415 G 41 41
390 Myanmar 13416 A 41 41
391 Myanmar 13417 T 41 41
392 Myanmar 13418 C 41 41
393 Myanmar 13419 A 41 41
394 Myanmar 13420 A 41 41
395 Myanmar 13421 C 41 41
396 Myanmar 13422 T 41 41
397 Myanmar 13423 C 41 41
398 Myanmar 13424 C 41 41
399 Myanmar 13425 G 41 41
400 Myanmar 13426 C 41 41
401 Myanmar 13427 G 41 41
402 Myanmar 13428 A 41 41
403 Myanmar 13429 A 41 41
404 Myanmar 13430 C 41 41
405 Myanmar 13431 C 41 41
406 Myanmar 13432 C 41 41
407 Myanmar 13433 A 41 41
408 Myanmar 13434 T 41 41
409 Myanmar 13435 G 41 41
410 Myanmar 13436 C 41 41
411 Myanmar 13437 T 41 41
412 Myanmar 13438 T 41 41
413 Myanmar 13439 C 41 41
414 Myanmar 13440 A 41 41
415 Myanmar 13441 G 41 41