National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39   1                                    
D   21           1                            
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                   1                    
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                               1        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Morocco 13026 C 122 122
1 Morocco 13027 T 122 122
2 Morocco 13028 G 122 122
3 Morocco 13029 G 122 122
4 Morocco 13030 T 122 122
5 Morocco 13031 A 122 122
6 Morocco 13032 A 122 122
7 Morocco 13033 T 122 122
8 Morocco 13034 G 122 122
9 Morocco 13035 C 122 122
10 Morocco 13036 A 122 122
11 Morocco 13037 A 122 122
12 Morocco 13038 C 122 122
13 Morocco 13039 A 122 122
14 Morocco 13040 G 122 122
15 Morocco 13041 A 122 122
16 Morocco 13042 A 122 122
17 Morocco 13043 G 122 122
18 Morocco 13044 T 122 122
19 Morocco 13045 G 122 122
20 Morocco 13046 C 122 122
21 Morocco 13047 C 122 122
22 Morocco 13048 T 122 122
23 Morocco 13049 G 122 122
24 Morocco 13050 C 122 122
25 Morocco 13051 C 122 122
26 Morocco 13052 A 122 122
27 Morocco 13053 A 122 122
28 Morocco 13054 T 122 122
29 Morocco 13055 T 122 122
30 Morocco 13056 C 122 122
31 Morocco 13057 A 122 122
32 Morocco 13058 A 122 122
33 Morocco 13059 C 122 122
34 Morocco 13060 T 122 122
35 Morocco 13061 G 122 122
36 Morocco 13062 T 122 122
37 Morocco 13063 A 122 122
38 Morocco 13064 T 122 122
39 Morocco 13065 T 122 122
40 Morocco 13066 A 122 122
41 Morocco 13067 T 122 122
42 Morocco 13068 C 122 122
43 Morocco 13069 T 122 122
44 Morocco 13070 T 122 122
45 Morocco 13071 T 122 122
46 Morocco 13072 C 122 122
47 Morocco 13073 T 122 122
48 Morocco 13074 G 122 122
49 Morocco 13075 T 122 122
50 Morocco 13076 G 122 122
51 Morocco 13077 C 122 122
52 Morocco 13078 T 122 122
53 Morocco 13079 T 122 122
54 Morocco 13080 T 122 122
55 Morocco 13081 T 122 122
56 Morocco 13082 G 122 122
57 Morocco 13083 C 122 122
58 Morocco 13084 T 122 122
59 Morocco 13085 G 122 122
60 Morocco 13086 T 122 122
61 Morocco 13087 A 122 122
62 Morocco 13088 G 122 122
63 Morocco 13089 A 122 122
64 Morocco 13090 T 122 122
65 Morocco 13091 G 122 122
66 Morocco 13092 C 122 122
67 Morocco 13093 T 122 122
68 Morocco 13094 G 122 122
69 Morocco 13095 C 122 122
70 Morocco 13096 T 122 122
71 Morocco 13097 A 122 122
72 Morocco 13098 A 122 122
73 Morocco 13099 A 122 122
74 Morocco 13100 G 122 122
75 Morocco 13101 C 122 122
76 Morocco 13102 T 122 122
77 Morocco 13103 T 122 122
78 Morocco 13104 A 122 122
79 Morocco 13105 C 122 122
80 Morocco 13106 A 122 122
81 Morocco 13107 A 122 122
82 Morocco 13108 A 122 122
83 Morocco 13109 G 122 122
84 Morocco 13110 A 122 122
85 Morocco 13111 T 122 122
86 Morocco 13112 T 122 122
87 Morocco 13113 A 122 122
88 Morocco 13114 T 122 122
89 Morocco 13115 C T 122 120 Leu4284Leu
90 Morocco 13116 T 122 122
91 Morocco 13117 A 122 122
92 Morocco 13118 G 122 122
93 Morocco 13119 C 122 122
94 Morocco 13120 T 122 122
95 Morocco 13121 A 122 122
96 Morocco 13122 G 122 122
97 Morocco 13123 T 122 122
98 Morocco 13124 G 122 122
99 Morocco 13125 G 122 122
100 Morocco 13126 G 122 122
101 Morocco 13127 G 122 122
102 Morocco 13128 G 122 122
103 Morocco 13129 A 122 122
104 Morocco 13130 C 122 122
105 Morocco 13131 A 122 122
106 Morocco 13132 A 122 122
107 Morocco 13133 C 122 122
108 Morocco 13134 C 121 121
109 Morocco 13135 A 121 121
110 Morocco 13136 A 121 121
111 Morocco 13137 T 121 121
112 Morocco 13138 C 121 121
113 Morocco 13139 A 121 121
114 Morocco 13140 C 121 121
115 Morocco 13141 T 121 121
116 Morocco 13142 A 121 121
117 Morocco 13143 A 121 121
118 Morocco 13144 T 121 121
119 Morocco 13145 T 121 121
120 Morocco 13146 G 121 121
121 Morocco 13147 T 121 121
122 Morocco 13148 G 121 121
123 Morocco 13149 T 121 121
124 Morocco 13150 T 121 121
125 Morocco 13151 A 121 121
126 Morocco 13152 A 121 121
127 Morocco 13153 G 121 121
128 Morocco 13154 A 121 121
129 Morocco 13155 T 121 121
130 Morocco 13156 G 121 121
131 Morocco 13157 T 121 121
132 Morocco 13158 T 121 121
133 Morocco 13159 G 121 121
134 Morocco 13160 T 121 121
135 Morocco 13161 G 121 121
136 Morocco 13162 T 121 121
137 Morocco 13163 A 121 121
138 Morocco 13164 C 121 121
139 Morocco 13165 A 121 121
140 Morocco 13166 C 121 121
141 Morocco 13167 A 121 121
142 Morocco 13168 C 121 121
143 Morocco 13169 A 121 121
144 Morocco 13170 C 121 121
145 Morocco 13171 T 121 121
146 Morocco 13172 G 121 121
147 Morocco 13173 G 121 121
148 Morocco 13174 T 121 121
149 Morocco 13175 A 121 121
150 Morocco 13176 C 121 121
151 Morocco 13177 T 121 121
152 Morocco 13178 G 121 121
153 Morocco 13179 G 121 121
154 Morocco 13180 T 121 121
155 Morocco 13181 C 121 121
156 Morocco 13182 A 121 121
157 Morocco 13183 G 121 121
158 Morocco 13184 G 121 121
159 Morocco 13185 C 121 121
160 Morocco 13186 A 121 121
161 Morocco 13187 A 121 121
162 Morocco 13188 T 121 121
163 Morocco 13189 A 121 121
164 Morocco 13190 A 121 121
165 Morocco 13191 C 121 121
166 Morocco 13192 A 121 121
167 Morocco 13193 G 121 121
168 Morocco 13194 T 121 121
169 Morocco 13195 T 121 121
170 Morocco 13196 A 121 121
171 Morocco 13197 C 121 121
172 Morocco 13198 A 121 121
173 Morocco 13199 C 121 121
174 Morocco 13200 C 121 121
175 Morocco 13201 G 121 121
176 Morocco 13202 G 121 121
177 Morocco 13203 A 121 121
178 Morocco 13204 A 121 121
179 Morocco 13205 G 121 121
180 Morocco 13206 C 121 121
181 Morocco 13207 C 121 121
182 Morocco 13208 A 121 121
183 Morocco 13209 A 121 121
184 Morocco 13210 T 121 121
185 Morocco 13211 A 121 121
186 Morocco 13212 T 121 121
187 Morocco 13213 G 121 121
188 Morocco 13214 G 121 121
189 Morocco 13215 A 121 121
190 Morocco 13216 T 121 121
191 Morocco 13217 C 121 121
192 Morocco 13218 A 121 121
193 Morocco 13219 A 121 121
194 Morocco 13220 G 121 121
195 Morocco 13221 A 121 121
196 Morocco 13222 A 121 121
197 Morocco 13223 T 121 121
198 Morocco 13224 C 121 121
199 Morocco 13225 C 121 121
200 Morocco 13226 T 121 121
201 Morocco 13227 T 121 121
202 Morocco 13228 T 121 121
203 Morocco 13229 G 121 121
204 Morocco 13230 G 121 121
205 Morocco 13231 T 121 121
206 Morocco 13232 G 121 121
207 Morocco 13233 G 121 121
208 Morocco 13234 T 121 121
209 Morocco 13235 G 121 121
210 Morocco 13236 C 121 121
211 Morocco 13237 A 121 121
212 Morocco 13238 T 121 121
213 Morocco 13239 C 121 121
214 Morocco 13240 G 121 121
215 Morocco 13241 T 121 121
216 Morocco 13242 G 121 121
217 Morocco 13243 T 121 121
218 Morocco 13244 T 121 121
219 Morocco 13245 G 121 121
220 Morocco 13246 T 121 121
221 Morocco 13247 C 121 121
222 Morocco 13248 T 121 121
223 Morocco 13249 G 121 121
224 Morocco 13250 T 121 121
225 Morocco 13251 A 121 121
226 Morocco 13252 C 121 121
227 Morocco 13253 T 121 121
228 Morocco 13254 G 121 121
229 Morocco 13255 C 121 121
230 Morocco 13256 C 121 121
231 Morocco 13257 G 121 121
232 Morocco 13258 T 121 121
233 Morocco 13259 T 121 121
234 Morocco 13260 G 121 121
235 Morocco 13261 C 121 121
236 Morocco 13262 C 121 121
237 Morocco 13263 A 121 121
238 Morocco 13264 C 121 121
239 Morocco 13265 A 121 121
240 Morocco 13266 T 121 121
241 Morocco 13267 A 121 121
242 Morocco 13268 G 121 121
243 Morocco 13269 A G 121 119 Asp4335Gly
244 Morocco 13270 T 121 121
245 Morocco 13271 C 121 121
246 Morocco 13272 A 121 121
247 Morocco 13273 T 121 121
248 Morocco 13274 C 121 121
249 Morocco 13275 C 121 121
250 Morocco 13276 A 121 121
251 Morocco 13277 A 121 121
252 Morocco 13278 A 121 121
253 Morocco 13279 T 121 121
254 Morocco 13280 C 121 121
255 Morocco 13281 C 121 121
256 Morocco 13282 T 121 121
257 Morocco 13283 A 121 121
258 Morocco 13284 A 121 121
259 Morocco 13285 A 121 121
260 Morocco 13286 G 121 121
261 Morocco 13287 G 121 121
262 Morocco 13288 A 121 121
263 Morocco 13289 T 121 121
264 Morocco 13290 T 121 121
265 Morocco 13291 T 121 121
266 Morocco 13292 T 121 121
267 Morocco 13293 G 121 121
268 Morocco 13294 T 121 121
269 Morocco 13295 G 121 121
270 Morocco 13296 A 121 121
271 Morocco 13297 C 121 121
272 Morocco 13298 T 121 121
273 Morocco 13299 T 121 121
274 Morocco 13300 A 121 121
275 Morocco 13301 A 121 121
276 Morocco 13302 A 121 121
277 Morocco 13303 A 121 121
278 Morocco 13304 G 121 121
279 Morocco 13305 G 121 121
280 Morocco 13306 T 121 121
281 Morocco 13307 A 121 121
282 Morocco 13308 A 121 121
283 Morocco 13309 G 121 121
284 Morocco 13310 T 121 121
285 Morocco 13311 A 121 121
286 Morocco 13312 T 121 121
287 Morocco 13313 G 121 121
288 Morocco 13314 T 121 121
289 Morocco 13315 A 121 121
290 Morocco 13316 C 121 121
291 Morocco 13317 A 121 121
292 Morocco 13318 A 121 121
293 Morocco 13319 A 121 121
294 Morocco 13320 T 121 121
295 Morocco 13321 A 121 121
296 Morocco 13322 C 121 121
297 Morocco 13323 C 121 121
298 Morocco 13324 T 121 121
299 Morocco 13325 A 121 121
300 Morocco 13326 C 121 121
301 Morocco 13327 A 121 121
302 Morocco 13328 A 121 121
303 Morocco 13329 C 121 121
304 Morocco 13330 T 121 121
305 Morocco 13331 T 121 121
306 Morocco 13332 G 121 121
307 Morocco 13333 T 121 121
308 Morocco 13334 G 121 121
309 Morocco 13335 C 121 121
310 Morocco 13336 T 121 121
311 Morocco 13337 A 121 121
312 Morocco 13338 A 121 121
313 Morocco 13339 T 121 121
314 Morocco 13340 G 121 121
315 Morocco 13341 A 121 121
316 Morocco 13342 C 121 121
317 Morocco 13343 C 121 121
318 Morocco 13344 C 121 121
319 Morocco 13345 T 121 121
320 Morocco 13346 G 121 121
321 Morocco 13347 T 121 121
322 Morocco 13348 G 121 121
323 Morocco 13349 G 121 121
324 Morocco 13350 G 121 121
325 Morocco 13351 T 121 121
326 Morocco 13352 T 121 121
327 Morocco 13353 T 121 121
328 Morocco 13354 T 121 121
329 Morocco 13355 A 121 121
330 Morocco 13356 C 121 121
331 Morocco 13357 A 121 121
332 Morocco 13358 C 121 121
333 Morocco 13359 T 121 121
334 Morocco 13360 T 121 121
335 Morocco 13361 A 121 121
336 Morocco 13362 A 121 121
337 Morocco 13363 A 121 121
338 Morocco 13364 A 121 121
339 Morocco 13365 A 121 121
340 Morocco 13366 C 121 121
341 Morocco 13367 A 121 121
342 Morocco 13368 C 121 121
343 Morocco 13369 A 121 121
344 Morocco 13370 G 121 121
345 Morocco 13371 T 121 121
346 Morocco 13372 C 121 121
347 Morocco 13373 T 121 121
348 Morocco 13374 G 121 121
349 Morocco 13375 T 121 121
350 Morocco 13376 A 121 121
351 Morocco 13377 C 121 121
352 Morocco 13378 C 121 121
353 Morocco 13379 G 121 121
354 Morocco 13380 T 121 121
355 Morocco 13381 C 121 121
356 Morocco 13382 T 121 121
357 Morocco 13383 G 121 121
358 Morocco 13384 C T 121 118 Cys4373Cys
359 Morocco 13385 G 121 121
360 Morocco 13386 G 120 120
361 Morocco 13387 T 120 120
362 Morocco 13388 A 120 120
363 Morocco 13389 T 120 120
364 Morocco 13390 G 120 120
365 Morocco 13391 T 120 120
366 Morocco 13392 G 120 120
367 Morocco 13393 G 120 120
368 Morocco 13394 A 120 120
369 Morocco 13395 A 120 120
370 Morocco 13396 A 120 120
371 Morocco 13397 G 119 119
372 Morocco 13398 G 119 119
373 Morocco 13399 T 119 119
374 Morocco 13400 T 119 119
375 Morocco 13401 A 119 119
376 Morocco 13402 T 119 119
377 Morocco 13403 G 119 119
378 Morocco 13404 G 119 119
379 Morocco 13405 C 119 119
380 Morocco 13406 T 119 119
381 Morocco 13407 G 119 119
382 Morocco 13408 T 119 119
383 Morocco 13409 A 119 119
384 Morocco 13410 G 119 119
385 Morocco 13411 T 119 119
386 Morocco 13412 T 119 119
387 Morocco 13413 G 119 119
388 Morocco 13414 T 119 119
389 Morocco 13415 G 119 119
390 Morocco 13416 A 119 119
391 Morocco 13417 T 119 119
392 Morocco 13418 C 119 119
393 Morocco 13419 A 119 119
394 Morocco 13420 A 119 119
395 Morocco 13421 C 119 119
396 Morocco 13422 T 119 119
397 Morocco 13423 C 119 119
398 Morocco 13424 C A 119 118 Arg4387Ser
399 Morocco 13425 G 119 119
400 Morocco 13426 C 119 119
401 Morocco 13427 G 119 119
402 Morocco 13428 A 119 119
403 Morocco 13429 A 119 119
404 Morocco 13430 C 119 119
405 Morocco 13431 C 119 119
406 Morocco 13432 C 119 119
407 Morocco 13433 A 119 119
408 Morocco 13434 T 119 119
409 Morocco 13435 G 119 119
410 Morocco 13436 C 119 119
411 Morocco 13437 T 119 119
412 Morocco 13438 T 119 119
413 Morocco 13439 C 119 119
414 Morocco 13440 A 119 119
415 Morocco 13441 G 119 119