National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Montenegro 13026 C 12 12
1 Montenegro 13027 T 12 12
2 Montenegro 13028 G 12 12
3 Montenegro 13029 G 12 12
4 Montenegro 13030 T 12 12
5 Montenegro 13031 A 12 12
6 Montenegro 13032 A 12 12
7 Montenegro 13033 T 12 12
8 Montenegro 13034 G 12 12
9 Montenegro 13035 C 12 12
10 Montenegro 13036 A 12 12
11 Montenegro 13037 A 12 12
12 Montenegro 13038 C 12 12
13 Montenegro 13039 A 12 12
14 Montenegro 13040 G 12 12
15 Montenegro 13041 A 12 12
16 Montenegro 13042 A 12 12
17 Montenegro 13043 G 12 12
18 Montenegro 13044 T 12 12
19 Montenegro 13045 G 12 12
20 Montenegro 13046 C 12 12
21 Montenegro 13047 C 12 12
22 Montenegro 13048 T 12 12
23 Montenegro 13049 G 12 12
24 Montenegro 13050 C 12 12
25 Montenegro 13051 C 12 12
26 Montenegro 13052 A 12 12
27 Montenegro 13053 A 12 12
28 Montenegro 13054 T 12 12
29 Montenegro 13055 T 12 12
30 Montenegro 13056 C 12 12
31 Montenegro 13057 A 12 12
32 Montenegro 13058 A 12 12
33 Montenegro 13059 C 12 12
34 Montenegro 13060 T 12 12
35 Montenegro 13061 G 12 12
36 Montenegro 13062 T 12 12
37 Montenegro 13063 A 12 12
38 Montenegro 13064 T 12 12
39 Montenegro 13065 T 12 12
40 Montenegro 13066 A 12 12
41 Montenegro 13067 T 12 12
42 Montenegro 13068 C 12 12
43 Montenegro 13069 T 12 12
44 Montenegro 13070 T 12 12
45 Montenegro 13071 T 12 12
46 Montenegro 13072 C 12 12
47 Montenegro 13073 T 12 12
48 Montenegro 13074 G 12 12
49 Montenegro 13075 T 12 12
50 Montenegro 13076 G 12 12
51 Montenegro 13077 C 12 12
52 Montenegro 13078 T 12 12
53 Montenegro 13079 T 12 12
54 Montenegro 13080 T 12 12
55 Montenegro 13081 T 12 12
56 Montenegro 13082 G 12 12
57 Montenegro 13083 C 12 12
58 Montenegro 13084 T 12 12
59 Montenegro 13085 G 12 12
60 Montenegro 13086 T 12 12
61 Montenegro 13087 A 12 12
62 Montenegro 13088 G 12 12
63 Montenegro 13089 A 12 12
64 Montenegro 13090 T 12 12
65 Montenegro 13091 G 12 12
66 Montenegro 13092 C 12 12
67 Montenegro 13093 T 12 12
68 Montenegro 13094 G 12 12
69 Montenegro 13095 C 12 12
70 Montenegro 13096 T 12 12
71 Montenegro 13097 A 12 12
72 Montenegro 13098 A 12 12
73 Montenegro 13099 A 12 12
74 Montenegro 13100 G 12 12
75 Montenegro 13101 C 12 12
76 Montenegro 13102 T 12 12
77 Montenegro 13103 T 12 12
78 Montenegro 13104 A 12 12
79 Montenegro 13105 C 12 12
80 Montenegro 13106 A 12 12
81 Montenegro 13107 A 12 12
82 Montenegro 13108 A 12 12
83 Montenegro 13109 G 12 12
84 Montenegro 13110 A 12 12
85 Montenegro 13111 T 12 12
86 Montenegro 13112 T 12 12
87 Montenegro 13113 A 12 12
88 Montenegro 13114 T 12 12
89 Montenegro 13115 C 12 12
90 Montenegro 13116 T 12 12
91 Montenegro 13117 A 12 12
92 Montenegro 13118 G 12 12
93 Montenegro 13119 C 12 12
94 Montenegro 13120 T 12 12
95 Montenegro 13121 A 12 12
96 Montenegro 13122 G 12 12
97 Montenegro 13123 T 12 12
98 Montenegro 13124 G 12 12
99 Montenegro 13125 G 12 12
100 Montenegro 13126 G 12 12
101 Montenegro 13127 G 12 12
102 Montenegro 13128 G 12 12
103 Montenegro 13129 A 12 12
104 Montenegro 13130 C 12 12
105 Montenegro 13131 A 12 12
106 Montenegro 13132 A 12 12
107 Montenegro 13133 C 12 12
108 Montenegro 13134 C 12 12
109 Montenegro 13135 A 12 12
110 Montenegro 13136 A 12 12
111 Montenegro 13137 T 12 12
112 Montenegro 13138 C 12 12
113 Montenegro 13139 A 12 12
114 Montenegro 13140 C 12 12
115 Montenegro 13141 T 12 12
116 Montenegro 13142 A 12 12
117 Montenegro 13143 A 12 12
118 Montenegro 13144 T 12 12
119 Montenegro 13145 T 12 12
120 Montenegro 13146 G 12 12
121 Montenegro 13147 T 12 12
122 Montenegro 13148 G 12 12
123 Montenegro 13149 T 12 12
124 Montenegro 13150 T 12 12
125 Montenegro 13151 A 12 12
126 Montenegro 13152 A 12 12
127 Montenegro 13153 G 12 12
128 Montenegro 13154 A 12 12
129 Montenegro 13155 T 12 12
130 Montenegro 13156 G 12 12
131 Montenegro 13157 T 12 12
132 Montenegro 13158 T 12 12
133 Montenegro 13159 G 12 12
134 Montenegro 13160 T 12 12
135 Montenegro 13161 G 12 12
136 Montenegro 13162 T 12 12
137 Montenegro 13163 A 12 12
138 Montenegro 13164 C 12 12
139 Montenegro 13165 A 12 12
140 Montenegro 13166 C 12 12
141 Montenegro 13167 A 12 12
142 Montenegro 13168 C 12 12
143 Montenegro 13169 A 12 12
144 Montenegro 13170 C 12 12
145 Montenegro 13171 T 12 12
146 Montenegro 13172 G 12 12
147 Montenegro 13173 G 12 12
148 Montenegro 13174 T 12 12
149 Montenegro 13175 A 12 12
150 Montenegro 13176 C 12 12
151 Montenegro 13177 T 12 12
152 Montenegro 13178 G 12 12
153 Montenegro 13179 G 12 12
154 Montenegro 13180 T 12 12
155 Montenegro 13181 C 12 12
156 Montenegro 13182 A 12 12
157 Montenegro 13183 G 12 12
158 Montenegro 13184 G 12 12
159 Montenegro 13185 C 12 12
160 Montenegro 13186 A 12 12
161 Montenegro 13187 A 12 12
162 Montenegro 13188 T 12 12
163 Montenegro 13189 A 12 12
164 Montenegro 13190 A 12 12
165 Montenegro 13191 C 12 12
166 Montenegro 13192 A 12 12
167 Montenegro 13193 G 12 12
168 Montenegro 13194 T 12 12
169 Montenegro 13195 T 12 12
170 Montenegro 13196 A 12 12
171 Montenegro 13197 C 12 12
172 Montenegro 13198 A 12 12
173 Montenegro 13199 C 12 12
174 Montenegro 13200 C 12 12
175 Montenegro 13201 G 12 12
176 Montenegro 13202 G 12 12
177 Montenegro 13203 A 12 12
178 Montenegro 13204 A 12 12
179 Montenegro 13205 G 12 12
180 Montenegro 13206 C 12 12
181 Montenegro 13207 C 12 12
182 Montenegro 13208 A 12 12
183 Montenegro 13209 A 12 12
184 Montenegro 13210 T 12 12
185 Montenegro 13211 A 12 12
186 Montenegro 13212 T 12 12
187 Montenegro 13213 G 12 12
188 Montenegro 13214 G 12 12
189 Montenegro 13215 A 12 12
190 Montenegro 13216 T 12 12
191 Montenegro 13217 C 12 12
192 Montenegro 13218 A 12 12
193 Montenegro 13219 A 12 12
194 Montenegro 13220 G 12 12
195 Montenegro 13221 A 12 12
196 Montenegro 13222 A 12 12
197 Montenegro 13223 T 12 12
198 Montenegro 13224 C 12 12
199 Montenegro 13225 C 12 12
200 Montenegro 13226 T 12 12
201 Montenegro 13227 T 12 12
202 Montenegro 13228 T 12 12
203 Montenegro 13229 G 12 12
204 Montenegro 13230 G 12 12
205 Montenegro 13231 T 12 12
206 Montenegro 13232 G 12 12
207 Montenegro 13233 G 12 12
208 Montenegro 13234 T 12 12
209 Montenegro 13235 G 12 12
210 Montenegro 13236 C 12 12
211 Montenegro 13237 A 12 12
212 Montenegro 13238 T 12 12
213 Montenegro 13239 C 12 12
214 Montenegro 13240 G 12 12
215 Montenegro 13241 T 12 12
216 Montenegro 13242 G 12 12
217 Montenegro 13243 T 12 12
218 Montenegro 13244 T 12 12
219 Montenegro 13245 G 12 12
220 Montenegro 13246 T 12 12
221 Montenegro 13247 C 12 12
222 Montenegro 13248 T 12 12
223 Montenegro 13249 G 12 12
224 Montenegro 13250 T 12 12
225 Montenegro 13251 A 12 12
226 Montenegro 13252 C 12 12
227 Montenegro 13253 T 12 12
228 Montenegro 13254 G 12 12
229 Montenegro 13255 C 12 12
230 Montenegro 13256 C 12 12
231 Montenegro 13257 G 12 12
232 Montenegro 13258 T 12 12
233 Montenegro 13259 T 12 12
234 Montenegro 13260 G 12 12
235 Montenegro 13261 C 12 12
236 Montenegro 13262 C 12 12
237 Montenegro 13263 A 12 12
238 Montenegro 13264 C 12 12
239 Montenegro 13265 A 12 12
240 Montenegro 13266 T 12 12
241 Montenegro 13267 A 12 12
242 Montenegro 13268 G 12 12
243 Montenegro 13269 A 12 12
244 Montenegro 13270 T 12 12
245 Montenegro 13271 C 12 12
246 Montenegro 13272 A 12 12
247 Montenegro 13273 T 12 12
248 Montenegro 13274 C 12 12
249 Montenegro 13275 C 12 12
250 Montenegro 13276 A 12 12
251 Montenegro 13277 A 12 12
252 Montenegro 13278 A 12 12
253 Montenegro 13279 T 12 12
254 Montenegro 13280 C 12 12
255 Montenegro 13281 C 12 12
256 Montenegro 13282 T 12 12
257 Montenegro 13283 A 12 12
258 Montenegro 13284 A 12 12
259 Montenegro 13285 A 12 12
260 Montenegro 13286 G 12 12
261 Montenegro 13287 G 12 12
262 Montenegro 13288 A 12 12
263 Montenegro 13289 T 12 12
264 Montenegro 13290 T 12 12
265 Montenegro 13291 T 12 12
266 Montenegro 13292 T 12 12
267 Montenegro 13293 G 12 12
268 Montenegro 13294 T 12 12
269 Montenegro 13295 G 12 12
270 Montenegro 13296 A 12 12
271 Montenegro 13297 C 12 12
272 Montenegro 13298 T 12 12
273 Montenegro 13299 T 12 12
274 Montenegro 13300 A 12 12
275 Montenegro 13301 A 12 12
276 Montenegro 13302 A 12 12
277 Montenegro 13303 A 12 12
278 Montenegro 13304 G 12 12
279 Montenegro 13305 G 12 12
280 Montenegro 13306 T 12 12
281 Montenegro 13307 A 12 12
282 Montenegro 13308 A 12 12
283 Montenegro 13309 G 12 12
284 Montenegro 13310 T 12 12
285 Montenegro 13311 A 12 12
286 Montenegro 13312 T 12 12
287 Montenegro 13313 G 12 12
288 Montenegro 13314 T 12 12
289 Montenegro 13315 A 12 12
290 Montenegro 13316 C 12 12
291 Montenegro 13317 A 12 12
292 Montenegro 13318 A 12 12
293 Montenegro 13319 A 12 12
294 Montenegro 13320 T 12 12
295 Montenegro 13321 A 12 12
296 Montenegro 13322 C 12 12
297 Montenegro 13323 C 12 12
298 Montenegro 13324 T 12 12
299 Montenegro 13325 A 12 12
300 Montenegro 13326 C 12 12
301 Montenegro 13327 A 12 12
302 Montenegro 13328 A 12 12
303 Montenegro 13329 C 12 12
304 Montenegro 13330 T 12 12
305 Montenegro 13331 T 12 12
306 Montenegro 13332 G 12 12
307 Montenegro 13333 T 12 12
308 Montenegro 13334 G 12 12
309 Montenegro 13335 C 12 12
310 Montenegro 13336 T 12 12
311 Montenegro 13337 A 12 12
312 Montenegro 13338 A 12 12
313 Montenegro 13339 T 12 12
314 Montenegro 13340 G 12 12
315 Montenegro 13341 A 12 12
316 Montenegro 13342 C 12 12
317 Montenegro 13343 C 12 12
318 Montenegro 13344 C 12 12
319 Montenegro 13345 T 12 12
320 Montenegro 13346 G 12 12
321 Montenegro 13347 T 12 12
322 Montenegro 13348 G 12 12
323 Montenegro 13349 G 12 12
324 Montenegro 13350 G 12 12
325 Montenegro 13351 T 12 12
326 Montenegro 13352 T 12 12
327 Montenegro 13353 T 12 12
328 Montenegro 13354 T 12 12
329 Montenegro 13355 A 12 12
330 Montenegro 13356 C 12 12
331 Montenegro 13357 A 12 12
332 Montenegro 13358 C 12 12
333 Montenegro 13359 T 12 12
334 Montenegro 13360 T 12 12
335 Montenegro 13361 A 12 12
336 Montenegro 13362 A 12 12
337 Montenegro 13363 A 12 12
338 Montenegro 13364 A 12 12
339 Montenegro 13365 A 12 12
340 Montenegro 13366 C 12 12
341 Montenegro 13367 A 12 12
342 Montenegro 13368 C 12 12
343 Montenegro 13369 A 12 12
344 Montenegro 13370 G 12 12
345 Montenegro 13371 T 12 12
346 Montenegro 13372 C 12 12
347 Montenegro 13373 T 12 12
348 Montenegro 13374 G 12 12
349 Montenegro 13375 T 12 12
350 Montenegro 13376 A 12 12
351 Montenegro 13377 C 12 12
352 Montenegro 13378 C 12 12
353 Montenegro 13379 G 12 12
354 Montenegro 13380 T 12 12
355 Montenegro 13381 C 12 12
356 Montenegro 13382 T 12 12
357 Montenegro 13383 G 12 12
358 Montenegro 13384 C 12 12
359 Montenegro 13385 G 12 12
360 Montenegro 13386 G 12 12
361 Montenegro 13387 T 12 12
362 Montenegro 13388 A 12 12
363 Montenegro 13389 T 12 12
364 Montenegro 13390 G 12 12
365 Montenegro 13391 T 12 12
366 Montenegro 13392 G 12 12
367 Montenegro 13393 G 12 12
368 Montenegro 13394 A 12 12
369 Montenegro 13395 A 12 12
370 Montenegro 13396 A 12 12
371 Montenegro 13397 G 12 12
372 Montenegro 13398 G 12 12
373 Montenegro 13399 T 12 12
374 Montenegro 13400 T 12 12
375 Montenegro 13401 A 12 12
376 Montenegro 13402 T 12 12
377 Montenegro 13403 G 12 12
378 Montenegro 13404 G 12 12
379 Montenegro 13405 C 12 12
380 Montenegro 13406 T 12 12
381 Montenegro 13407 G 12 12
382 Montenegro 13408 T 12 12
383 Montenegro 13409 A 12 12
384 Montenegro 13410 G 12 12
385 Montenegro 13411 T 12 12
386 Montenegro 13412 T 12 12
387 Montenegro 13413 G 12 12
388 Montenegro 13414 T 12 12
389 Montenegro 13415 G 12 12
390 Montenegro 13416 A 12 12
391 Montenegro 13417 T 12 12
392 Montenegro 13418 C 12 12
393 Montenegro 13419 A 12 12
394 Montenegro 13420 A 12 12
395 Montenegro 13421 C 12 12
396 Montenegro 13422 T 12 12
397 Montenegro 13423 C 12 12
398 Montenegro 13424 C 12 12
399 Montenegro 13425 G 12 12
400 Montenegro 13426 C 12 12
401 Montenegro 13427 G 12 12
402 Montenegro 13428 A 12 12
403 Montenegro 13429 A 12 12
404 Montenegro 13430 C 12 12
405 Montenegro 13431 C 12 12
406 Montenegro 13432 C 12 12
407 Montenegro 13433 A 12 12
408 Montenegro 13434 T 12 12
409 Montenegro 13435 G 12 12
410 Montenegro 13436 C 12 12
411 Montenegro 13437 T 12 12
412 Montenegro 13438 T 12 12
413 Montenegro 13439 C 12 12
414 Montenegro 13440 A 12 12
415 Montenegro 13441 G 12 12