National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mongolia 13026 C 7 7
1 Mongolia 13027 T 7 7
2 Mongolia 13028 G 7 7
3 Mongolia 13029 G 7 7
4 Mongolia 13030 T 7 7
5 Mongolia 13031 A 7 7
6 Mongolia 13032 A 7 7
7 Mongolia 13033 T 7 7
8 Mongolia 13034 G 7 7
9 Mongolia 13035 C 7 7
10 Mongolia 13036 A 7 7
11 Mongolia 13037 A 7 7
12 Mongolia 13038 C 7 7
13 Mongolia 13039 A 7 7
14 Mongolia 13040 G 7 7
15 Mongolia 13041 A 7 7
16 Mongolia 13042 A 7 7
17 Mongolia 13043 G 7 7
18 Mongolia 13044 T 7 7
19 Mongolia 13045 G 7 7
20 Mongolia 13046 C 7 7
21 Mongolia 13047 C 7 7
22 Mongolia 13048 T 7 7
23 Mongolia 13049 G 7 7
24 Mongolia 13050 C 7 7
25 Mongolia 13051 C 7 7
26 Mongolia 13052 A 7 7
27 Mongolia 13053 A 7 7
28 Mongolia 13054 T 7 7
29 Mongolia 13055 T 7 7
30 Mongolia 13056 C 7 7
31 Mongolia 13057 A 7 7
32 Mongolia 13058 A 7 7
33 Mongolia 13059 C 7 7
34 Mongolia 13060 T 7 7
35 Mongolia 13061 G 7 7
36 Mongolia 13062 T 7 7
37 Mongolia 13063 A 7 7
38 Mongolia 13064 T 7 7
39 Mongolia 13065 T 7 7
40 Mongolia 13066 A 7 7
41 Mongolia 13067 T 7 7
42 Mongolia 13068 C 7 7
43 Mongolia 13069 T 7 7
44 Mongolia 13070 T 7 7
45 Mongolia 13071 T 7 7
46 Mongolia 13072 C 7 7
47 Mongolia 13073 T 7 7
48 Mongolia 13074 G 7 7
49 Mongolia 13075 T 7 7
50 Mongolia 13076 G 7 7
51 Mongolia 13077 C 7 7
52 Mongolia 13078 T 7 7
53 Mongolia 13079 T 7 7
54 Mongolia 13080 T 7 7
55 Mongolia 13081 T 7 7
56 Mongolia 13082 G 7 7
57 Mongolia 13083 C 7 7
58 Mongolia 13084 T 7 7
59 Mongolia 13085 G 7 7
60 Mongolia 13086 T 7 7
61 Mongolia 13087 A 7 7
62 Mongolia 13088 G 7 7
63 Mongolia 13089 A 7 7
64 Mongolia 13090 T 7 7
65 Mongolia 13091 G 7 7
66 Mongolia 13092 C 7 7
67 Mongolia 13093 T 7 7
68 Mongolia 13094 G 7 7
69 Mongolia 13095 C 7 7
70 Mongolia 13096 T 7 7
71 Mongolia 13097 A 7 7
72 Mongolia 13098 A 7 7
73 Mongolia 13099 A 7 7
74 Mongolia 13100 G 7 7
75 Mongolia 13101 C 7 7
76 Mongolia 13102 T 7 7
77 Mongolia 13103 T 7 7
78 Mongolia 13104 A 7 7
79 Mongolia 13105 C 7 7
80 Mongolia 13106 A 7 7
81 Mongolia 13107 A 7 7
82 Mongolia 13108 A 7 7
83 Mongolia 13109 G 7 7
84 Mongolia 13110 A 7 7
85 Mongolia 13111 T 7 7
86 Mongolia 13112 T 7 7
87 Mongolia 13113 A 7 7
88 Mongolia 13114 T 7 7
89 Mongolia 13115 C 7 7
90 Mongolia 13116 T 7 7
91 Mongolia 13117 A 7 7
92 Mongolia 13118 G 7 7
93 Mongolia 13119 C 7 7
94 Mongolia 13120 T 7 7
95 Mongolia 13121 A 7 7
96 Mongolia 13122 G 7 7
97 Mongolia 13123 T 7 7
98 Mongolia 13124 G 7 7
99 Mongolia 13125 G 7 7
100 Mongolia 13126 G 7 7
101 Mongolia 13127 G 7 7
102 Mongolia 13128 G 7 7
103 Mongolia 13129 A 7 7
104 Mongolia 13130 C 7 7
105 Mongolia 13131 A 7 7
106 Mongolia 13132 A 7 7
107 Mongolia 13133 C 7 7
108 Mongolia 13134 C 7 7
109 Mongolia 13135 A 7 7
110 Mongolia 13136 A 7 7
111 Mongolia 13137 T 7 7
112 Mongolia 13138 C 7 7
113 Mongolia 13139 A 7 7
114 Mongolia 13140 C 7 7
115 Mongolia 13141 T 7 7
116 Mongolia 13142 A 7 7
117 Mongolia 13143 A 7 7
118 Mongolia 13144 T 7 7
119 Mongolia 13145 T 7 7
120 Mongolia 13146 G 7 7
121 Mongolia 13147 T 7 7
122 Mongolia 13148 G 7 7
123 Mongolia 13149 T 7 7
124 Mongolia 13150 T 7 7
125 Mongolia 13151 A 7 7
126 Mongolia 13152 A 7 7
127 Mongolia 13153 G 7 7
128 Mongolia 13154 A 7 7
129 Mongolia 13155 T 7 7
130 Mongolia 13156 G 7 7
131 Mongolia 13157 T 7 7
132 Mongolia 13158 T 7 7
133 Mongolia 13159 G 7 7
134 Mongolia 13160 T 7 7
135 Mongolia 13161 G 7 7
136 Mongolia 13162 T 7 7
137 Mongolia 13163 A 7 7
138 Mongolia 13164 C 7 7
139 Mongolia 13165 A 7 7
140 Mongolia 13166 C 7 7
141 Mongolia 13167 A 7 7
142 Mongolia 13168 C 7 7
143 Mongolia 13169 A 7 7
144 Mongolia 13170 C 7 7
145 Mongolia 13171 T 7 7
146 Mongolia 13172 G 7 7
147 Mongolia 13173 G 7 7
148 Mongolia 13174 T 7 7
149 Mongolia 13175 A 7 7
150 Mongolia 13176 C 7 7
151 Mongolia 13177 T 7 7
152 Mongolia 13178 G 7 7
153 Mongolia 13179 G 7 7
154 Mongolia 13180 T 7 7
155 Mongolia 13181 C 7 7
156 Mongolia 13182 A 7 7
157 Mongolia 13183 G 7 7
158 Mongolia 13184 G 7 7
159 Mongolia 13185 C 7 7
160 Mongolia 13186 A 7 7
161 Mongolia 13187 A 7 7
162 Mongolia 13188 T 7 7
163 Mongolia 13189 A 7 7
164 Mongolia 13190 A 7 7
165 Mongolia 13191 C 7 7
166 Mongolia 13192 A 7 7
167 Mongolia 13193 G 7 7
168 Mongolia 13194 T 7 7
169 Mongolia 13195 T 7 7
170 Mongolia 13196 A 7 7
171 Mongolia 13197 C 7 7
172 Mongolia 13198 A 7 7
173 Mongolia 13199 C 7 7
174 Mongolia 13200 C 7 7
175 Mongolia 13201 G 7 7
176 Mongolia 13202 G 7 7
177 Mongolia 13203 A 7 7
178 Mongolia 13204 A 7 7
179 Mongolia 13205 G 7 7
180 Mongolia 13206 C 7 7
181 Mongolia 13207 C 7 7
182 Mongolia 13208 A 7 7
183 Mongolia 13209 A 7 7
184 Mongolia 13210 T 7 7
185 Mongolia 13211 A 7 7
186 Mongolia 13212 T 7 7
187 Mongolia 13213 G 7 7
188 Mongolia 13214 G 7 7
189 Mongolia 13215 A 7 7
190 Mongolia 13216 T 7 7
191 Mongolia 13217 C 7 7
192 Mongolia 13218 A 7 7
193 Mongolia 13219 A 7 7
194 Mongolia 13220 G 7 7
195 Mongolia 13221 A 7 7
196 Mongolia 13222 A 7 7
197 Mongolia 13223 T 7 7
198 Mongolia 13224 C 7 7
199 Mongolia 13225 C 7 7
200 Mongolia 13226 T 7 7
201 Mongolia 13227 T 7 7
202 Mongolia 13228 T 7 7
203 Mongolia 13229 G 7 7
204 Mongolia 13230 G 7 7
205 Mongolia 13231 T 7 7
206 Mongolia 13232 G 7 7
207 Mongolia 13233 G 7 7
208 Mongolia 13234 T 7 7
209 Mongolia 13235 G 7 7
210 Mongolia 13236 C 7 7
211 Mongolia 13237 A 7 7
212 Mongolia 13238 T 7 7
213 Mongolia 13239 C 7 7
214 Mongolia 13240 G 7 7
215 Mongolia 13241 T 7 7
216 Mongolia 13242 G 7 7
217 Mongolia 13243 T 7 7
218 Mongolia 13244 T 7 7
219 Mongolia 13245 G 7 7
220 Mongolia 13246 T 7 7
221 Mongolia 13247 C 7 7
222 Mongolia 13248 T 7 7
223 Mongolia 13249 G 7 7
224 Mongolia 13250 T 7 7
225 Mongolia 13251 A 7 7
226 Mongolia 13252 C 7 7
227 Mongolia 13253 T 7 7
228 Mongolia 13254 G 7 7
229 Mongolia 13255 C 7 7
230 Mongolia 13256 C 7 7
231 Mongolia 13257 G 7 7
232 Mongolia 13258 T 7 7
233 Mongolia 13259 T 7 7
234 Mongolia 13260 G 7 7
235 Mongolia 13261 C 7 7
236 Mongolia 13262 C 7 7
237 Mongolia 13263 A 7 7
238 Mongolia 13264 C 7 7
239 Mongolia 13265 A 7 7
240 Mongolia 13266 T 7 7
241 Mongolia 13267 A 7 7
242 Mongolia 13268 G 7 7
243 Mongolia 13269 A 7 7
244 Mongolia 13270 T 7 7
245 Mongolia 13271 C 7 7
246 Mongolia 13272 A 7 7
247 Mongolia 13273 T 7 7
248 Mongolia 13274 C 7 7
249 Mongolia 13275 C 7 7
250 Mongolia 13276 A 7 7
251 Mongolia 13277 A 7 7
252 Mongolia 13278 A 7 7
253 Mongolia 13279 T 7 7
254 Mongolia 13280 C 7 7
255 Mongolia 13281 C 7 7
256 Mongolia 13282 T 7 7
257 Mongolia 13283 A 7 7
258 Mongolia 13284 A 7 7
259 Mongolia 13285 A 7 7
260 Mongolia 13286 G 7 7
261 Mongolia 13287 G 7 7
262 Mongolia 13288 A 7 7
263 Mongolia 13289 T 7 7
264 Mongolia 13290 T 7 7
265 Mongolia 13291 T 7 7
266 Mongolia 13292 T 7 7
267 Mongolia 13293 G 7 7
268 Mongolia 13294 T 7 7
269 Mongolia 13295 G 7 7
270 Mongolia 13296 A 7 7
271 Mongolia 13297 C 7 7
272 Mongolia 13298 T 7 7
273 Mongolia 13299 T 7 7
274 Mongolia 13300 A 7 7
275 Mongolia 13301 A 7 7
276 Mongolia 13302 A 7 7
277 Mongolia 13303 A 7 7
278 Mongolia 13304 G 7 7
279 Mongolia 13305 G 7 7
280 Mongolia 13306 T 7 7
281 Mongolia 13307 A 7 7
282 Mongolia 13308 A 7 7
283 Mongolia 13309 G 7 7
284 Mongolia 13310 T 7 7
285 Mongolia 13311 A 7 7
286 Mongolia 13312 T 7 7
287 Mongolia 13313 G 7 7
288 Mongolia 13314 T 7 7
289 Mongolia 13315 A 7 7
290 Mongolia 13316 C 7 7
291 Mongolia 13317 A 7 7
292 Mongolia 13318 A 7 7
293 Mongolia 13319 A 7 7
294 Mongolia 13320 T 7 7
295 Mongolia 13321 A 7 7
296 Mongolia 13322 C 7 7
297 Mongolia 13323 C 7 7
298 Mongolia 13324 T 7 7
299 Mongolia 13325 A 7 7
300 Mongolia 13326 C 7 7
301 Mongolia 13327 A 7 7
302 Mongolia 13328 A 7 7
303 Mongolia 13329 C 7 7
304 Mongolia 13330 T 7 7
305 Mongolia 13331 T 7 7
306 Mongolia 13332 G 7 7
307 Mongolia 13333 T 7 7
308 Mongolia 13334 G 7 7
309 Mongolia 13335 C 7 7
310 Mongolia 13336 T 7 7
311 Mongolia 13337 A 7 7
312 Mongolia 13338 A 7 7
313 Mongolia 13339 T 7 7
314 Mongolia 13340 G 7 7
315 Mongolia 13341 A 7 7
316 Mongolia 13342 C 7 7
317 Mongolia 13343 C 7 7
318 Mongolia 13344 C 7 7
319 Mongolia 13345 T 7 7
320 Mongolia 13346 G 7 7
321 Mongolia 13347 T 7 7
322 Mongolia 13348 G 7 7
323 Mongolia 13349 G 7 7
324 Mongolia 13350 G 7 7
325 Mongolia 13351 T 7 7
326 Mongolia 13352 T 7 7
327 Mongolia 13353 T 7 7
328 Mongolia 13354 T 7 7
329 Mongolia 13355 A 7 7
330 Mongolia 13356 C 7 7
331 Mongolia 13357 A 7 7
332 Mongolia 13358 C 7 7
333 Mongolia 13359 T 7 7
334 Mongolia 13360 T 7 7
335 Mongolia 13361 A 7 7
336 Mongolia 13362 A 7 7
337 Mongolia 13363 A 7 7
338 Mongolia 13364 A 7 7
339 Mongolia 13365 A 7 7
340 Mongolia 13366 C 7 7
341 Mongolia 13367 A 7 7
342 Mongolia 13368 C 7 7
343 Mongolia 13369 A 7 7
344 Mongolia 13370 G 7 7
345 Mongolia 13371 T 7 7
346 Mongolia 13372 C 7 7
347 Mongolia 13373 T 7 7
348 Mongolia 13374 G 7 7
349 Mongolia 13375 T 7 7
350 Mongolia 13376 A 7 7
351 Mongolia 13377 C 7 7
352 Mongolia 13378 C 7 7
353 Mongolia 13379 G 7 7
354 Mongolia 13380 T 7 7
355 Mongolia 13381 C 7 7
356 Mongolia 13382 T 7 7
357 Mongolia 13383 G 7 7
358 Mongolia 13384 C 7 7
359 Mongolia 13385 G 7 7
360 Mongolia 13386 G 7 7
361 Mongolia 13387 T 7 7
362 Mongolia 13388 A 7 7
363 Mongolia 13389 T 7 7
364 Mongolia 13390 G 7 7
365 Mongolia 13391 T 7 7
366 Mongolia 13392 G 7 7
367 Mongolia 13393 G 7 7
368 Mongolia 13394 A 7 7
369 Mongolia 13395 A 7 7
370 Mongolia 13396 A 7 7
371 Mongolia 13397 G 7 7
372 Mongolia 13398 G 7 7
373 Mongolia 13399 T 7 7
374 Mongolia 13400 T 7 7
375 Mongolia 13401 A 7 7
376 Mongolia 13402 T 7 7
377 Mongolia 13403 G 7 7
378 Mongolia 13404 G 7 7
379 Mongolia 13405 C 7 7
380 Mongolia 13406 T 7 7
381 Mongolia 13407 G 7 7
382 Mongolia 13408 T 7 7
383 Mongolia 13409 A 7 7
384 Mongolia 13410 G 7 7
385 Mongolia 13411 T 7 7
386 Mongolia 13412 T 7 7
387 Mongolia 13413 G 7 7
388 Mongolia 13414 T 7 7
389 Mongolia 13415 G 7 7
390 Mongolia 13416 A 7 7
391 Mongolia 13417 T 7 7
392 Mongolia 13418 C 7 7
393 Mongolia 13419 A 7 7
394 Mongolia 13420 A 7 7
395 Mongolia 13421 C 7 7
396 Mongolia 13422 T 7 7
397 Mongolia 13423 C 7 7
398 Mongolia 13424 C 7 7
399 Mongolia 13425 G 7 7
400 Mongolia 13426 C 7 7
401 Mongolia 13427 G 7 7
402 Mongolia 13428 A 7 7
403 Mongolia 13429 A 7 7
404 Mongolia 13430 C 7 7
405 Mongolia 13431 C 7 7
406 Mongolia 13432 C 7 7
407 Mongolia 13433 A 7 7
408 Mongolia 13434 T 7 7
409 Mongolia 13435 G 7 7
410 Mongolia 13436 C 7 7
411 Mongolia 13437 T 7 7
412 Mongolia 13438 T 7 7
413 Mongolia 13439 C 7 7
414 Mongolia 13440 A 7 7
415 Mongolia 13441 G 7 7