National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 1                             1   2    
C   39   1                                    
D   21     2                                  
E   12                                        
F   15         1                              
G   39           2                            
H   9                                        
I   12               1                        
K   24                                        
L   24                   1                    
M   12                                        
N   21                       1       1        
P   24                                        
Q   18                           1            
R   6                                        
S   18                                        
T   39                       1         1      
V   27                                   1    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mexico 13026 C 598 598
1 Mexico 13027 T 598 598
2 Mexico 13028 G 598 598
3 Mexico 13029 G 598 598
4 Mexico 13030 T 598 598
5 Mexico 13031 A 598 598
6 Mexico 13032 A 598 598
7 Mexico 13033 T 598 598
8 Mexico 13034 G 598 598
9 Mexico 13035 C T 598 597 Ala4257Val
10 Mexico 13036 A 598 598
11 Mexico 13037 A 598 598
12 Mexico 13038 C 598 598
13 Mexico 13039 A 598 598
14 Mexico 13040 G 598 598
15 Mexico 13041 A 598 598
16 Mexico 13042 A 598 598
17 Mexico 13043 G 598 598
18 Mexico 13044 T 598 598
19 Mexico 13045 G 598 598
20 Mexico 13046 C 598 598
21 Mexico 13047 C 598 598
22 Mexico 13048 T 598 598
23 Mexico 13049 G 598 598
24 Mexico 13050 C 598 598
25 Mexico 13051 C 598 598
26 Mexico 13052 A 598 598
27 Mexico 13053 A 598 598
28 Mexico 13054 T 598 598
29 Mexico 13055 T 598 598
30 Mexico 13056 C 598 598
31 Mexico 13057 A 598 598
32 Mexico 13058 A 598 598
33 Mexico 13059 C 598 598
34 Mexico 13060 T 598 598
35 Mexico 13061 G 598 598
36 Mexico 13062 T 598 598
37 Mexico 13063 A 598 598
38 Mexico 13064 T 598 598
39 Mexico 13065 T 598 598
40 Mexico 13066 A 598 598
41 Mexico 13067 T 598 598
42 Mexico 13068 C 598 598
43 Mexico 13069 T 598 598
44 Mexico 13070 T 598 598
45 Mexico 13071 T 598 598
46 Mexico 13072 C 598 598
47 Mexico 13073 T 598 598
48 Mexico 13074 G 598 598
49 Mexico 13075 T 598 598
50 Mexico 13076 G 598 598
51 Mexico 13077 C 598 598
52 Mexico 13078 T 598 598
53 Mexico 13079 T 598 598
54 Mexico 13080 T 598 598
55 Mexico 13081 T 598 598
56 Mexico 13082 G 598 598
57 Mexico 13083 C 598 598
58 Mexico 13084 T 598 598
59 Mexico 13085 G 598 598
60 Mexico 13086 T 598 598
61 Mexico 13087 A 598 598
62 Mexico 13088 G 598 598
63 Mexico 13089 A 598 598
64 Mexico 13090 T 598 598
65 Mexico 13091 G 598 598
66 Mexico 13092 C 598 598
67 Mexico 13093 T 598 598
68 Mexico 13094 G T 598 597 Ala4277Ser
69 Mexico 13095 C 598 598
70 Mexico 13096 T 598 598
71 Mexico 13097 A 598 598
72 Mexico 13098 A 598 598
73 Mexico 13099 A 598 598
74 Mexico 13100 G 598 598
75 Mexico 13101 C 598 598
76 Mexico 13102 T C 598 597 Ala4279Ala
77 Mexico 13103 T 598 598
78 Mexico 13104 A 598 598
79 Mexico 13105 C 598 598
80 Mexico 13106 A 598 598
81 Mexico 13107 A 598 598
82 Mexico 13108 A 598 598
83 Mexico 13109 G 598 598
84 Mexico 13110 A 598 598
85 Mexico 13111 T 598 598
86 Mexico 13112 T 598 598
87 Mexico 13113 A 598 598
88 Mexico 13114 T 598 598
89 Mexico 13115 C T 598 597 Leu4284Leu
90 Mexico 13116 T 598 598
91 Mexico 13117 A 598 598
92 Mexico 13118 G 598 598
93 Mexico 13119 C T 598 574 Ala4285Val
94 Mexico 13120 T 598 598
95 Mexico 13121 A 598 598
96 Mexico 13122 G 598 598
97 Mexico 13123 T 598 598
98 Mexico 13124 G 598 598
99 Mexico 13125 G 598 598
100 Mexico 13126 G T 598 597 Gly4287Gly
101 Mexico 13127 G 598 598
102 Mexico 13128 G 598 598
103 Mexico 13129 A 598 598
104 Mexico 13130 C 598 598
105 Mexico 13131 A 598 598
106 Mexico 13132 A 598 598
107 Mexico 13133 C 598 598
108 Mexico 13134 C 598 598
109 Mexico 13135 A 598 598
110 Mexico 13136 A 598 598
111 Mexico 13137 T 598 598
112 Mexico 13138 C 598 598
113 Mexico 13139 A 598 598
114 Mexico 13140 C 598 598
115 Mexico 13141 T 598 598
116 Mexico 13142 A 598 598
117 Mexico 13143 A 598 598
118 Mexico 13144 T 598 598
119 Mexico 13145 T 598 598
120 Mexico 13146 G 598 598
121 Mexico 13147 T 598 598
122 Mexico 13148 G 598 598
123 Mexico 13149 T 598 598
124 Mexico 13150 T 598 598
125 Mexico 13151 A 598 598
126 Mexico 13152 A 598 598
127 Mexico 13153 G 598 598
128 Mexico 13154 A 598 598
129 Mexico 13155 T 598 598
130 Mexico 13156 G 598 598
131 Mexico 13157 T 598 598
132 Mexico 13158 T 598 598
133 Mexico 13159 G 598 598
134 Mexico 13160 T 598 598
135 Mexico 13161 G 598 598
136 Mexico 13162 T 598 598
137 Mexico 13163 A 598 598
138 Mexico 13164 C 598 598
139 Mexico 13165 A 598 597
140 Mexico 13166 C 598 598
141 Mexico 13167 A 598 597
142 Mexico 13168 C 598 598
143 Mexico 13169 A 598 598
144 Mexico 13170 C 598 598
145 Mexico 13171 T 598 598
146 Mexico 13172 G 598 598
147 Mexico 13173 G 598 598
148 Mexico 13174 T 598 598
149 Mexico 13175 A 598 598
150 Mexico 13176 C 598 598
151 Mexico 13177 T 598 598
152 Mexico 13178 G 598 598
153 Mexico 13179 G 598 598
154 Mexico 13180 T 598 598
155 Mexico 13181 C 598 598
156 Mexico 13182 A 598 598
157 Mexico 13183 G 598 598
158 Mexico 13184 G 598 598
159 Mexico 13185 C 598 598
160 Mexico 13186 A 598 598
161 Mexico 13187 A 598 598
162 Mexico 13188 T 598 598
163 Mexico 13189 A 598 598
164 Mexico 13190 A 598 598
165 Mexico 13191 C 598 598
166 Mexico 13192 A 598 598
167 Mexico 13193 G 598 598
168 Mexico 13194 T 598 598
169 Mexico 13195 T 598 598
170 Mexico 13196 A 598 598
171 Mexico 13197 C 598 598
172 Mexico 13198 A 598 598
173 Mexico 13199 C 598 597
174 Mexico 13200 C 598 598
175 Mexico 13201 G 598 598
176 Mexico 13202 G 598 598
177 Mexico 13203 A 598 598
178 Mexico 13204 A 598 598
179 Mexico 13205 G 598 598
180 Mexico 13206 C 598 598
181 Mexico 13207 C 598 598
182 Mexico 13208 A 598 598
183 Mexico 13209 A 598 598
184 Mexico 13210 T 598 597
185 Mexico 13211 A 598 598
186 Mexico 13212 T 598 598
187 Mexico 13213 G 598 598
188 Mexico 13214 G 598 598
189 Mexico 13215 A 598 597
190 Mexico 13216 T C 598 597 Asp4317Asp
191 Mexico 13217 C 598 597
192 Mexico 13218 A 598 598
193 Mexico 13219 A 598 598
194 Mexico 13220 G 598 597
195 Mexico 13221 A 598 597
196 Mexico 13222 A 598 597
197 Mexico 13223 T 598 597
198 Mexico 13224 C 598 597
199 Mexico 13225 C 598 597
200 Mexico 13226 T 598 597
201 Mexico 13227 T 598 597
202 Mexico 13228 T 598 597
203 Mexico 13229 G 598 597
204 Mexico 13230 G 598 597
205 Mexico 13231 T 598 597
206 Mexico 13232 G 598 597
207 Mexico 13233 G 598 596
208 Mexico 13234 T 598 596
209 Mexico 13235 G 598 596
210 Mexico 13236 C 598 597
211 Mexico 13237 A 598 597
212 Mexico 13238 T 598 597
213 Mexico 13239 C 598 597
214 Mexico 13240 G 598 597
215 Mexico 13241 T 598 596
216 Mexico 13242 G 598 597
217 Mexico 13243 T 598 597
218 Mexico 13244 T 598 596
219 Mexico 13245 G 598 597
220 Mexico 13246 T 598 596
221 Mexico 13247 C 598 597
222 Mexico 13248 T 598 597
223 Mexico 13249 G 598 597
224 Mexico 13250 T 598 597
225 Mexico 13251 A 598 597
226 Mexico 13252 C 598 597
227 Mexico 13253 T 598 598
228 Mexico 13254 G 598 598
229 Mexico 13255 C T 598 597 Cys4330Cys
230 Mexico 13256 C 598 598
231 Mexico 13257 G 598 598
232 Mexico 13258 T 598 597
233 Mexico 13259 T 598 598
234 Mexico 13260 G 598 598
235 Mexico 13261 C 598 598
236 Mexico 13262 C 598 598
237 Mexico 13263 A 598 598
238 Mexico 13264 C 598 598
239 Mexico 13265 A 598 598
240 Mexico 13266 T 598 598
241 Mexico 13267 A T 598 597 Ile4334Ile
242 Mexico 13268 G 598 598
243 Mexico 13269 A 598 598
244 Mexico 13270 T C 598 597 Asp4335Asp
245 Mexico 13271 C 598 598
246 Mexico 13272 A 598 598
247 Mexico 13273 T 598 598
248 Mexico 13274 C 598 598
249 Mexico 13275 C 598 598
250 Mexico 13276 A 598 598
251 Mexico 13277 A 598 598
252 Mexico 13278 A G 598 597 Asn4338Ser
253 Mexico 13279 T 598 598
254 Mexico 13280 C 598 598
255 Mexico 13281 C 598 598
256 Mexico 13282 T 598 598
257 Mexico 13283 A 598 598
258 Mexico 13284 A 598 598
259 Mexico 13285 A 598 597
260 Mexico 13286 G 598 598
261 Mexico 13287 G 598 598
262 Mexico 13288 A G 598 597 Gly4341Gly
263 Mexico 13289 T 598 598
264 Mexico 13290 T 598 598
265 Mexico 13291 T 598 598
266 Mexico 13292 T 598 598
267 Mexico 13293 G 598 598
268 Mexico 13294 T 598 598
269 Mexico 13295 G 598 598
270 Mexico 13296 A 598 598
271 Mexico 13297 C 598 598
272 Mexico 13298 T 598 598
273 Mexico 13299 T 598 598
274 Mexico 13300 A 598 598
275 Mexico 13301 A 598 598
276 Mexico 13302 A 598 598
277 Mexico 13303 A 598 597
278 Mexico 13304 G 598 598
279 Mexico 13305 G 598 598
280 Mexico 13306 T 598 598
281 Mexico 13307 A 598 598
282 Mexico 13308 A 598 598
283 Mexico 13309 G 598 598
284 Mexico 13310 T 598 598
285 Mexico 13311 A 598 598
286 Mexico 13312 T 598 598
287 Mexico 13313 G 598 598
288 Mexico 13314 T 598 598
289 Mexico 13315 A 598 598
290 Mexico 13316 C 598 598
291 Mexico 13317 A 598 598
292 Mexico 13318 A G 598 597 Gln4351Gln
293 Mexico 13319 A 598 598
294 Mexico 13320 T 598 598
295 Mexico 13321 A 598 598
296 Mexico 13322 C 598 598
297 Mexico 13323 C 598 598
298 Mexico 13324 T 598 598
299 Mexico 13325 A 598 598
300 Mexico 13326 C 598 598
301 Mexico 13327 A 598 598
302 Mexico 13328 A 598 598
303 Mexico 13329 C A 598 597 Thr4355Asn
304 Mexico 13330 T 598 598
305 Mexico 13331 T 598 598
306 Mexico 13332 G 598 598
307 Mexico 13333 T 598 598
308 Mexico 13334 G 598 598
309 Mexico 13335 C 598 598
310 Mexico 13336 T 598 598
311 Mexico 13337 A 598 598
312 Mexico 13338 A 598 598
313 Mexico 13339 T 598 598
314 Mexico 13340 G 598 598
315 Mexico 13341 A 598 598
316 Mexico 13342 C 598 598
317 Mexico 13343 C 598 598
318 Mexico 13344 C 598 598
319 Mexico 13345 T 598 598
320 Mexico 13346 G 598 598
321 Mexico 13347 T 598 598
322 Mexico 13348 G T 598 597 Val4361Val
323 Mexico 13349 G 598 598
324 Mexico 13350 G 598 598
325 Mexico 13351 T 598 598
326 Mexico 13352 T 598 598
327 Mexico 13353 T 598 598
328 Mexico 13354 T C 598 596 Phe4363Phe
329 Mexico 13355 A 598 598
330 Mexico 13356 C 598 598
331 Mexico 13357 A 598 598
332 Mexico 13358 C 598 598
333 Mexico 13359 T 598 598
334 Mexico 13360 T 598 598
335 Mexico 13361 A 598 598
336 Mexico 13362 A 598 598
337 Mexico 13363 A 598 598
338 Mexico 13364 A 597 597
339 Mexico 13365 A 597 597
340 Mexico 13366 C T 597 596 Asn4367Asn
341 Mexico 13367 A 597 597
342 Mexico 13368 C 597 597
343 Mexico 13369 A 597 597
344 Mexico 13370 G 597 597
345 Mexico 13371 T 597 597
346 Mexico 13372 C 597 597
347 Mexico 13373 T 597 597
348 Mexico 13374 G 597 597
349 Mexico 13375 T 597 597
350 Mexico 13376 A 597 597
351 Mexico 13377 C 597 597
352 Mexico 13378 C T 597 596 Thr4371Thr
353 Mexico 13379 G 597 597
354 Mexico 13380 T 597 597
355 Mexico 13381 C 597 597
356 Mexico 13382 T 597 597
357 Mexico 13383 G 597 597
358 Mexico 13384 C 597 597
359 Mexico 13385 G 597 597
360 Mexico 13386 G 597 597
361 Mexico 13387 T 597 597
362 Mexico 13388 A 597 597
363 Mexico 13389 T 597 597
364 Mexico 13390 G 597 597
365 Mexico 13391 T 597 597
366 Mexico 13392 G 597 597
367 Mexico 13393 G 597 597
368 Mexico 13394 A 597 597
369 Mexico 13395 A 597 597
370 Mexico 13396 A 597 597
371 Mexico 13397 G 597 597
372 Mexico 13398 G 597 597
373 Mexico 13399 T 597 597
374 Mexico 13400 T 597 597
375 Mexico 13401 A 597 597
376 Mexico 13402 T 597 597
377 Mexico 13403 G 597 597
378 Mexico 13404 G 597 597
379 Mexico 13405 C 597 597
380 Mexico 13406 T 597 597
381 Mexico 13407 G 597 597
382 Mexico 13408 T 597 597
383 Mexico 13409 A 597 597
384 Mexico 13410 G 597 597
385 Mexico 13411 T 597 597
386 Mexico 13412 T 597 597
387 Mexico 13413 G 597 597
388 Mexico 13414 T 597 596
389 Mexico 13415 G 597 596
390 Mexico 13416 A 597 596
391 Mexico 13417 T 597 596
392 Mexico 13418 C 597 596
393 Mexico 13419 A 597 596
394 Mexico 13420 A 597 596
395 Mexico 13421 C 597 596
396 Mexico 13422 T 597 596
397 Mexico 13423 C 597 596
398 Mexico 13424 C 597 597
399 Mexico 13425 G 597 597
400 Mexico 13426 C 597 597
401 Mexico 13427 G 597 597
402 Mexico 13428 A 597 597
403 Mexico 13429 A 597 597
404 Mexico 13430 C 597 597
405 Mexico 13431 C 597 597
406 Mexico 13432 C 597 597
407 Mexico 13433 A 597 597
408 Mexico 13434 T 597 597
409 Mexico 13435 G 597 597
410 Mexico 13436 C 597 597
411 Mexico 13437 T 597 597
412 Mexico 13438 T 597 597
413 Mexico 13439 C 597 597
414 Mexico 13440 A 597 597
415 Mexico 13441 G 596 596