National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Lithuania 13026 C 235 235
1 Lithuania 13027 T 235 235
2 Lithuania 13028 G 235 235
3 Lithuania 13029 G 235 235
4 Lithuania 13030 T 235 235
5 Lithuania 13031 A 235 235
6 Lithuania 13032 A 235 235
7 Lithuania 13033 T 235 235
8 Lithuania 13034 G 235 235
9 Lithuania 13035 C 235 235
10 Lithuania 13036 A 235 235
11 Lithuania 13037 A 235 235
12 Lithuania 13038 C 235 235
13 Lithuania 13039 A 235 235
14 Lithuania 13040 G 235 235
15 Lithuania 13041 A 235 235
16 Lithuania 13042 A 235 235
17 Lithuania 13043 G 235 235
18 Lithuania 13044 T 235 235
19 Lithuania 13045 G 235 235
20 Lithuania 13046 C 235 235
21 Lithuania 13047 C 235 235
22 Lithuania 13048 T 235 235
23 Lithuania 13049 G 235 235
24 Lithuania 13050 C 235 235
25 Lithuania 13051 C 235 235
26 Lithuania 13052 A 235 235
27 Lithuania 13053 A 235 235
28 Lithuania 13054 T 235 235
29 Lithuania 13055 T 235 235
30 Lithuania 13056 C 235 235
31 Lithuania 13057 A 235 235
32 Lithuania 13058 A 235 235
33 Lithuania 13059 C 235 235
34 Lithuania 13060 T 235 235
35 Lithuania 13061 G 235 234
36 Lithuania 13062 T 235 234
37 Lithuania 13063 A 235 234
38 Lithuania 13064 T 235 234
39 Lithuania 13065 T 235 234
40 Lithuania 13066 A 235 235
41 Lithuania 13067 T 235 235
42 Lithuania 13068 C 235 235
43 Lithuania 13069 T 235 235
44 Lithuania 13070 T 235 235
45 Lithuania 13071 T 235 235
46 Lithuania 13072 C 235 235
47 Lithuania 13073 T 235 235
48 Lithuania 13074 G 235 235
49 Lithuania 13075 T 235 235
50 Lithuania 13076 G 235 235
51 Lithuania 13077 C 235 235
52 Lithuania 13078 T 235 235
53 Lithuania 13079 T 235 235
54 Lithuania 13080 T 235 235
55 Lithuania 13081 T 235 235
56 Lithuania 13082 G 235 235
57 Lithuania 13083 C 235 235
58 Lithuania 13084 T 235 235
59 Lithuania 13085 G 235 235
60 Lithuania 13086 T 235 235
61 Lithuania 13087 A 235 235
62 Lithuania 13088 G 235 235
63 Lithuania 13089 A 235 235
64 Lithuania 13090 T 235 235
65 Lithuania 13091 G 235 235
66 Lithuania 13092 C 235 235
67 Lithuania 13093 T 235 235
68 Lithuania 13094 G 235 235
69 Lithuania 13095 C 235 235
70 Lithuania 13096 T 235 235
71 Lithuania 13097 A 235 235
72 Lithuania 13098 A 235 235
73 Lithuania 13099 A 235 235
74 Lithuania 13100 G 235 235
75 Lithuania 13101 C 235 235
76 Lithuania 13102 T 235 235
77 Lithuania 13103 T 235 235
78 Lithuania 13104 A 235 235
79 Lithuania 13105 C 235 235
80 Lithuania 13106 A 235 235
81 Lithuania 13107 A 235 235
82 Lithuania 13108 A 235 235
83 Lithuania 13109 G 235 235
84 Lithuania 13110 A 235 235
85 Lithuania 13111 T 235 235
86 Lithuania 13112 T 235 235
87 Lithuania 13113 A 235 235
88 Lithuania 13114 T 235 235
89 Lithuania 13115 C 235 235
90 Lithuania 13116 T 235 235
91 Lithuania 13117 A 235 234
92 Lithuania 13118 G 235 234
93 Lithuania 13119 C 235 234
94 Lithuania 13120 T 235 234
95 Lithuania 13121 A 235 234
96 Lithuania 13122 G 235 234
97 Lithuania 13123 T 235 234
98 Lithuania 13124 G 235 234
99 Lithuania 13125 G 235 234
100 Lithuania 13126 G 235 234
101 Lithuania 13127 G 235 235
102 Lithuania 13128 G 235 235
103 Lithuania 13129 A 235 235
104 Lithuania 13130 C 235 235
105 Lithuania 13131 A 235 235
106 Lithuania 13132 A 235 235
107 Lithuania 13133 C 235 235
108 Lithuania 13134 C 235 235
109 Lithuania 13135 A 235 235
110 Lithuania 13136 A 235 235
111 Lithuania 13137 T 235 235
112 Lithuania 13138 C 235 235
113 Lithuania 13139 A 235 235
114 Lithuania 13140 C 235 235
115 Lithuania 13141 T 235 235
116 Lithuania 13142 A 235 235
117 Lithuania 13143 A 235 235
118 Lithuania 13144 T 235 235
119 Lithuania 13145 T 235 235
120 Lithuania 13146 G 235 235
121 Lithuania 13147 T 235 235
122 Lithuania 13148 G 235 235
123 Lithuania 13149 T 235 234
124 Lithuania 13150 T 235 234
125 Lithuania 13151 A 235 234
126 Lithuania 13152 A 235 234
127 Lithuania 13153 G 235 234
128 Lithuania 13154 A 235 234
129 Lithuania 13155 T 235 234
130 Lithuania 13156 G 235 234
131 Lithuania 13157 T 235 234
132 Lithuania 13158 T 235 234
133 Lithuania 13159 G 235 234
134 Lithuania 13160 T 235 234
135 Lithuania 13161 G 235 234
136 Lithuania 13162 T 235 234
137 Lithuania 13163 A 235 234
138 Lithuania 13164 C 235 235
139 Lithuania 13165 A 235 235
140 Lithuania 13166 C 235 235
141 Lithuania 13167 A 235 235
142 Lithuania 13168 C 235 235
143 Lithuania 13169 A 235 235
144 Lithuania 13170 C 235 235
145 Lithuania 13171 T 235 235
146 Lithuania 13172 G 235 235
147 Lithuania 13173 G 235 235
148 Lithuania 13174 T 235 235
149 Lithuania 13175 A 235 235
150 Lithuania 13176 C 235 235
151 Lithuania 13177 T 235 235
152 Lithuania 13178 G 235 235
153 Lithuania 13179 G 235 235
154 Lithuania 13180 T 235 235
155 Lithuania 13181 C 235 235
156 Lithuania 13182 A 235 235
157 Lithuania 13183 G 235 235
158 Lithuania 13184 G 235 235
159 Lithuania 13185 C 235 235
160 Lithuania 13186 A 235 235
161 Lithuania 13187 A 235 235
162 Lithuania 13188 T 235 235
163 Lithuania 13189 A 235 235
164 Lithuania 13190 A 235 235
165 Lithuania 13191 C 235 235
166 Lithuania 13192 A 235 235
167 Lithuania 13193 G 235 235
168 Lithuania 13194 T 235 235
169 Lithuania 13195 T 235 235
170 Lithuania 13196 A 235 235
171 Lithuania 13197 C 235 235
172 Lithuania 13198 A 235 235
173 Lithuania 13199 C 235 235
174 Lithuania 13200 C 235 235
175 Lithuania 13201 G 235 235
176 Lithuania 13202 G 235 235
177 Lithuania 13203 A 235 235
178 Lithuania 13204 A 235 235
179 Lithuania 13205 G 235 235
180 Lithuania 13206 C 235 235
181 Lithuania 13207 C 235 235
182 Lithuania 13208 A 235 235
183 Lithuania 13209 A 235 235
184 Lithuania 13210 T 235 235
185 Lithuania 13211 A 235 235
186 Lithuania 13212 T 235 235
187 Lithuania 13213 G 235 235
188 Lithuania 13214 G 235 235
189 Lithuania 13215 A 235 235
190 Lithuania 13216 T 235 235
191 Lithuania 13217 C 235 235
192 Lithuania 13218 A 235 235
193 Lithuania 13219 A 235 235
194 Lithuania 13220 G 235 235
195 Lithuania 13221 A 235 235
196 Lithuania 13222 A 235 235
197 Lithuania 13223 T 235 235
198 Lithuania 13224 C 235 235
199 Lithuania 13225 C 235 235
200 Lithuania 13226 T 235 235
201 Lithuania 13227 T 235 235
202 Lithuania 13228 T 235 235
203 Lithuania 13229 G 235 235
204 Lithuania 13230 G 235 235
205 Lithuania 13231 T 235 235
206 Lithuania 13232 G 235 235
207 Lithuania 13233 G 235 235
208 Lithuania 13234 T 235 235
209 Lithuania 13235 G 235 235
210 Lithuania 13236 C 235 235
211 Lithuania 13237 A 235 235
212 Lithuania 13238 T 235 235
213 Lithuania 13239 C 235 235
214 Lithuania 13240 G 235 235
215 Lithuania 13241 T 235 235
216 Lithuania 13242 G 235 235
217 Lithuania 13243 T 235 235
218 Lithuania 13244 T 235 235
219 Lithuania 13245 G 235 235
220 Lithuania 13246 T 235 235
221 Lithuania 13247 C 235 235
222 Lithuania 13248 T 235 235
223 Lithuania 13249 G 235 235
224 Lithuania 13250 T 235 235
225 Lithuania 13251 A 235 235
226 Lithuania 13252 C 235 235
227 Lithuania 13253 T 235 235
228 Lithuania 13254 G 235 235
229 Lithuania 13255 C 235 235
230 Lithuania 13256 C 235 235
231 Lithuania 13257 G 235 235
232 Lithuania 13258 T 235 235
233 Lithuania 13259 T 235 235
234 Lithuania 13260 G 235 235
235 Lithuania 13261 C 235 235
236 Lithuania 13262 C 235 235
237 Lithuania 13263 A 235 235
238 Lithuania 13264 C 235 235
239 Lithuania 13265 A 235 235
240 Lithuania 13266 T 235 235
241 Lithuania 13267 A 235 235
242 Lithuania 13268 G 235 235
243 Lithuania 13269 A 235 235
244 Lithuania 13270 T 235 235
245 Lithuania 13271 C 235 235
246 Lithuania 13272 A 235 235
247 Lithuania 13273 T 235 235
248 Lithuania 13274 C 235 235
249 Lithuania 13275 C 235 235
250 Lithuania 13276 A 235 235
251 Lithuania 13277 A 235 235
252 Lithuania 13278 A 235 235
253 Lithuania 13279 T 235 235
254 Lithuania 13280 C 235 235
255 Lithuania 13281 C 235 235
256 Lithuania 13282 T 235 235
257 Lithuania 13283 A 235 235
258 Lithuania 13284 A 235 235
259 Lithuania 13285 A 235 235
260 Lithuania 13286 G 235 235
261 Lithuania 13287 G 235 235
262 Lithuania 13288 A 235 235
263 Lithuania 13289 T 235 235
264 Lithuania 13290 T 235 235
265 Lithuania 13291 T 235 235
266 Lithuania 13292 T 235 235
267 Lithuania 13293 G 235 235
268 Lithuania 13294 T 235 235
269 Lithuania 13295 G 235 235
270 Lithuania 13296 A 235 235
271 Lithuania 13297 C 235 235
272 Lithuania 13298 T 235 235
273 Lithuania 13299 T 235 235
274 Lithuania 13300 A 235 235
275 Lithuania 13301 A 235 235
276 Lithuania 13302 A 235 235
277 Lithuania 13303 A 235 235
278 Lithuania 13304 G 235 235
279 Lithuania 13305 G 235 235
280 Lithuania 13306 T 235 235
281 Lithuania 13307 A 235 235
282 Lithuania 13308 A 235 235
283 Lithuania 13309 G 235 235
284 Lithuania 13310 T 235 235
285 Lithuania 13311 A 235 235
286 Lithuania 13312 T 235 235
287 Lithuania 13313 G 235 235
288 Lithuania 13314 T 235 235
289 Lithuania 13315 A 235 235
290 Lithuania 13316 C 235 235
291 Lithuania 13317 A 235 235
292 Lithuania 13318 A 235 235
293 Lithuania 13319 A 235 235
294 Lithuania 13320 T 235 235
295 Lithuania 13321 A 235 235
296 Lithuania 13322 C 235 235
297 Lithuania 13323 C 235 235
298 Lithuania 13324 T 235 235
299 Lithuania 13325 A 235 235
300 Lithuania 13326 C 235 235
301 Lithuania 13327 A 235 235
302 Lithuania 13328 A 235 235
303 Lithuania 13329 C 235 235
304 Lithuania 13330 T 235 235
305 Lithuania 13331 T 235 235
306 Lithuania 13332 G 235 235
307 Lithuania 13333 T 235 235
308 Lithuania 13334 G 235 235
309 Lithuania 13335 C 235 235
310 Lithuania 13336 T 235 235
311 Lithuania 13337 A 235 235
312 Lithuania 13338 A 235 235
313 Lithuania 13339 T 235 235
314 Lithuania 13340 G 235 235
315 Lithuania 13341 A 235 235
316 Lithuania 13342 C 235 235
317 Lithuania 13343 C 235 235
318 Lithuania 13344 C 235 235
319 Lithuania 13345 T 235 235
320 Lithuania 13346 G 235 235
321 Lithuania 13347 T 235 235
322 Lithuania 13348 G 235 235
323 Lithuania 13349 G 235 235
324 Lithuania 13350 G 235 235
325 Lithuania 13351 T 235 235
326 Lithuania 13352 T 235 235
327 Lithuania 13353 T 235 235
328 Lithuania 13354 T 235 235
329 Lithuania 13355 A 234 234
330 Lithuania 13356 C 234 234
331 Lithuania 13357 A 234 234
332 Lithuania 13358 C 234 234
333 Lithuania 13359 T 234 234
334 Lithuania 13360 T 234 234
335 Lithuania 13361 A 234 234
336 Lithuania 13362 A 234 234
337 Lithuania 13363 A 234 234
338 Lithuania 13364 A 234 234
339 Lithuania 13365 A 234 234
340 Lithuania 13366 C 234 234
341 Lithuania 13367 A 234 234
342 Lithuania 13368 C 234 234
343 Lithuania 13369 A 234 234
344 Lithuania 13370 G 234 234
345 Lithuania 13371 T 234 234
346 Lithuania 13372 C 234 234
347 Lithuania 13373 T 234 234
348 Lithuania 13374 G 234 234
349 Lithuania 13375 T 234 234
350 Lithuania 13376 A 234 234
351 Lithuania 13377 C 234 234
352 Lithuania 13378 C 234 234
353 Lithuania 13379 G 234 234
354 Lithuania 13380 T 234 234
355 Lithuania 13381 C 234 234
356 Lithuania 13382 T 234 234
357 Lithuania 13383 G 234 234
358 Lithuania 13384 C 234 234
359 Lithuania 13385 G 234 234
360 Lithuania 13386 G 234 234
361 Lithuania 13387 T 234 234
362 Lithuania 13388 A 234 234
363 Lithuania 13389 T 234 234
364 Lithuania 13390 G 234 234
365 Lithuania 13391 T 234 234
366 Lithuania 13392 G 234 234
367 Lithuania 13393 G 234 234
368 Lithuania 13394 A 234 234
369 Lithuania 13395 A 234 234
370 Lithuania 13396 A 234 234
371 Lithuania 13397 G 234 234
372 Lithuania 13398 G 234 234
373 Lithuania 13399 T 234 234
374 Lithuania 13400 T 234 234
375 Lithuania 13401 A 234 234
376 Lithuania 13402 T 234 234
377 Lithuania 13403 G 234 234
378 Lithuania 13404 G 234 234
379 Lithuania 13405 C 234 234
380 Lithuania 13406 T 234 234
381 Lithuania 13407 G 234 234
382 Lithuania 13408 T 234 234
383 Lithuania 13409 A 234 234
384 Lithuania 13410 G 234 234
385 Lithuania 13411 T 234 234
386 Lithuania 13412 T 234 234
387 Lithuania 13413 G 234 234
388 Lithuania 13414 T 234 234
389 Lithuania 13415 G 234 234
390 Lithuania 13416 A 234 234
391 Lithuania 13417 T 234 234
392 Lithuania 13418 C 234 234
393 Lithuania 13419 A 234 234
394 Lithuania 13420 A 234 234
395 Lithuania 13421 C 234 234
396 Lithuania 13422 T 234 234
397 Lithuania 13423 C 234 234
398 Lithuania 13424 C 234 234
399 Lithuania 13425 G 234 234
400 Lithuania 13426 C 234 234
401 Lithuania 13427 G 234 234
402 Lithuania 13428 A 234 234
403 Lithuania 13429 A 234 234
404 Lithuania 13430 C 234 234
405 Lithuania 13431 C 234 234
406 Lithuania 13432 C 234 234
407 Lithuania 13433 A 234 234
408 Lithuania 13434 T 234 234
409 Lithuania 13435 G 234 234
410 Lithuania 13436 C 234 234
411 Lithuania 13437 T 234 234
412 Lithuania 13438 T 234 234
413 Lithuania 13439 C 234 234
414 Lithuania 13440 A 234 234
415 Lithuania 13441 G 234 234