National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                   1    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Lebanon 13026 C 23 23
1 Lebanon 13027 T 23 23
2 Lebanon 13028 G 23 23
3 Lebanon 13029 G 23 23
4 Lebanon 13030 T 23 23
5 Lebanon 13031 A 23 23
6 Lebanon 13032 A 23 23
7 Lebanon 13033 T 23 23
8 Lebanon 13034 G 23 23
9 Lebanon 13035 C 23 23
10 Lebanon 13036 A 23 23
11 Lebanon 13037 A 23 23
12 Lebanon 13038 C 23 23
13 Lebanon 13039 A 23 23
14 Lebanon 13040 G 23 23
15 Lebanon 13041 A 23 23
16 Lebanon 13042 A 23 23
17 Lebanon 13043 G 23 23
18 Lebanon 13044 T 23 23
19 Lebanon 13045 G 23 23
20 Lebanon 13046 C 23 23
21 Lebanon 13047 C 23 23
22 Lebanon 13048 T 23 23
23 Lebanon 13049 G 23 23
24 Lebanon 13050 C 23 23
25 Lebanon 13051 C 23 23
26 Lebanon 13052 A 23 23
27 Lebanon 13053 A 23 23
28 Lebanon 13054 T 23 23
29 Lebanon 13055 T 23 23
30 Lebanon 13056 C 23 23
31 Lebanon 13057 A 23 23
32 Lebanon 13058 A 23 23
33 Lebanon 13059 C 23 23
34 Lebanon 13060 T 23 23
35 Lebanon 13061 G 23 23
36 Lebanon 13062 T 23 23
37 Lebanon 13063 A 23 23
38 Lebanon 13064 T 23 23
39 Lebanon 13065 T 23 23
40 Lebanon 13066 A 23 23
41 Lebanon 13067 T 23 23
42 Lebanon 13068 C 23 23
43 Lebanon 13069 T 23 23
44 Lebanon 13070 T 23 23
45 Lebanon 13071 T 23 23
46 Lebanon 13072 C 23 23
47 Lebanon 13073 T 23 23
48 Lebanon 13074 G 23 23
49 Lebanon 13075 T 23 23
50 Lebanon 13076 G 23 23
51 Lebanon 13077 C 23 23
52 Lebanon 13078 T 23 23
53 Lebanon 13079 T 23 23
54 Lebanon 13080 T 23 23
55 Lebanon 13081 T 23 23
56 Lebanon 13082 G 23 23
57 Lebanon 13083 C 23 23
58 Lebanon 13084 T 23 23
59 Lebanon 13085 G 23 23
60 Lebanon 13086 T 23 23
61 Lebanon 13087 A 23 23
62 Lebanon 13088 G 23 23
63 Lebanon 13089 A 23 23
64 Lebanon 13090 T 23 23
65 Lebanon 13091 G 23 23
66 Lebanon 13092 C 23 23
67 Lebanon 13093 T 23 23
68 Lebanon 13094 G 23 23
69 Lebanon 13095 C 23 23
70 Lebanon 13096 T 23 23
71 Lebanon 13097 A 23 23
72 Lebanon 13098 A 23 23
73 Lebanon 13099 A 23 23
74 Lebanon 13100 G 23 23
75 Lebanon 13101 C 23 23
76 Lebanon 13102 T 23 23
77 Lebanon 13103 T 23 23
78 Lebanon 13104 A 23 23
79 Lebanon 13105 C 23 23
80 Lebanon 13106 A 23 23
81 Lebanon 13107 A 23 23
82 Lebanon 13108 A 23 23
83 Lebanon 13109 G 23 23
84 Lebanon 13110 A 23 23
85 Lebanon 13111 T 23 23
86 Lebanon 13112 T 23 23
87 Lebanon 13113 A 23 23
88 Lebanon 13114 T 23 23
89 Lebanon 13115 C 23 23
90 Lebanon 13116 T 23 23
91 Lebanon 13117 A 23 23
92 Lebanon 13118 G 23 23
93 Lebanon 13119 C 23 23
94 Lebanon 13120 T 23 23
95 Lebanon 13121 A 23 23
96 Lebanon 13122 G 23 23
97 Lebanon 13123 T 23 23
98 Lebanon 13124 G 23 23
99 Lebanon 13125 G 23 23
100 Lebanon 13126 G 23 23
101 Lebanon 13127 G 23 23
102 Lebanon 13128 G 23 23
103 Lebanon 13129 A 23 23
104 Lebanon 13130 C 23 23
105 Lebanon 13131 A 23 23
106 Lebanon 13132 A 23 23
107 Lebanon 13133 C 23 23
108 Lebanon 13134 C 23 23
109 Lebanon 13135 A 23 23
110 Lebanon 13136 A 23 23
111 Lebanon 13137 T 23 23
112 Lebanon 13138 C 23 23
113 Lebanon 13139 A 23 23
114 Lebanon 13140 C 23 23
115 Lebanon 13141 T 23 23
116 Lebanon 13142 A 23 23
117 Lebanon 13143 A 23 23
118 Lebanon 13144 T 23 23
119 Lebanon 13145 T 23 23
120 Lebanon 13146 G 23 23
121 Lebanon 13147 T 23 23
122 Lebanon 13148 G 23 23
123 Lebanon 13149 T 23 23
124 Lebanon 13150 T 23 23
125 Lebanon 13151 A 23 23
126 Lebanon 13152 A 23 23
127 Lebanon 13153 G 23 23
128 Lebanon 13154 A 23 23
129 Lebanon 13155 T 23 23
130 Lebanon 13156 G 23 23
131 Lebanon 13157 T 23 23
132 Lebanon 13158 T 23 23
133 Lebanon 13159 G 23 23
134 Lebanon 13160 T 23 23
135 Lebanon 13161 G 23 23
136 Lebanon 13162 T 23 23
137 Lebanon 13163 A 23 23
138 Lebanon 13164 C 23 23
139 Lebanon 13165 A 23 23
140 Lebanon 13166 C 23 23
141 Lebanon 13167 A 23 23
142 Lebanon 13168 C 23 23
143 Lebanon 13169 A 23 23
144 Lebanon 13170 C 23 23
145 Lebanon 13171 T 23 23
146 Lebanon 13172 G 23 23
147 Lebanon 13173 G 23 23
148 Lebanon 13174 T 23 23
149 Lebanon 13175 A 23 23
150 Lebanon 13176 C 23 23
151 Lebanon 13177 T 23 23
152 Lebanon 13178 G 23 23
153 Lebanon 13179 G 23 23
154 Lebanon 13180 T 23 23
155 Lebanon 13181 C 23 23
156 Lebanon 13182 A 23 23
157 Lebanon 13183 G 23 23
158 Lebanon 13184 G 23 23
159 Lebanon 13185 C 23 23
160 Lebanon 13186 A 23 23
161 Lebanon 13187 A 23 23
162 Lebanon 13188 T 23 23
163 Lebanon 13189 A 23 23
164 Lebanon 13190 A 23 23
165 Lebanon 13191 C 23 23
166 Lebanon 13192 A 23 23
167 Lebanon 13193 G 23 23
168 Lebanon 13194 T 23 23
169 Lebanon 13195 T 23 23
170 Lebanon 13196 A 23 23
171 Lebanon 13197 C 23 23
172 Lebanon 13198 A 23 23
173 Lebanon 13199 C 23 23
174 Lebanon 13200 C 23 23
175 Lebanon 13201 G 23 23
176 Lebanon 13202 G 23 23
177 Lebanon 13203 A 23 23
178 Lebanon 13204 A 23 23
179 Lebanon 13205 G 23 23
180 Lebanon 13206 C 23 23
181 Lebanon 13207 C 23 23
182 Lebanon 13208 A 23 23
183 Lebanon 13209 A 23 23
184 Lebanon 13210 T 23 23
185 Lebanon 13211 A 23 23
186 Lebanon 13212 T 23 23
187 Lebanon 13213 G 23 23
188 Lebanon 13214 G 23 23
189 Lebanon 13215 A 23 23
190 Lebanon 13216 T 23 23
191 Lebanon 13217 C 23 23
192 Lebanon 13218 A 23 23
193 Lebanon 13219 A 23 23
194 Lebanon 13220 G 23 23
195 Lebanon 13221 A 23 23
196 Lebanon 13222 A 23 23
197 Lebanon 13223 T 23 23
198 Lebanon 13224 C 23 23
199 Lebanon 13225 C 23 23
200 Lebanon 13226 T 23 23
201 Lebanon 13227 T 23 23
202 Lebanon 13228 T 23 23
203 Lebanon 13229 G 23 23
204 Lebanon 13230 G 23 23
205 Lebanon 13231 T 23 23
206 Lebanon 13232 G 23 23
207 Lebanon 13233 G 23 23
208 Lebanon 13234 T 23 23
209 Lebanon 13235 G 23 23
210 Lebanon 13236 C 23 23
211 Lebanon 13237 A 23 23
212 Lebanon 13238 T 23 23
213 Lebanon 13239 C 23 23
214 Lebanon 13240 G 23 23
215 Lebanon 13241 T 23 23
216 Lebanon 13242 G 23 23
217 Lebanon 13243 T 23 23
218 Lebanon 13244 T 23 23
219 Lebanon 13245 G 23 23
220 Lebanon 13246 T 23 23
221 Lebanon 13247 C 23 23
222 Lebanon 13248 T 23 23
223 Lebanon 13249 G 23 23
224 Lebanon 13250 T 23 23
225 Lebanon 13251 A 23 23
226 Lebanon 13252 C 23 23
227 Lebanon 13253 T 23 23
228 Lebanon 13254 G 23 23
229 Lebanon 13255 C 23 23
230 Lebanon 13256 C 23 23
231 Lebanon 13257 G 23 23
232 Lebanon 13258 T 23 23
233 Lebanon 13259 T 23 23
234 Lebanon 13260 G 23 23
235 Lebanon 13261 C 23 23
236 Lebanon 13262 C 23 23
237 Lebanon 13263 A 23 23
238 Lebanon 13264 C 23 23
239 Lebanon 13265 A 23 23
240 Lebanon 13266 T 23 23
241 Lebanon 13267 A 23 23
242 Lebanon 13268 G 23 23
243 Lebanon 13269 A 23 23
244 Lebanon 13270 T 23 23
245 Lebanon 13271 C 23 23
246 Lebanon 13272 A 23 23
247 Lebanon 13273 T 23 23
248 Lebanon 13274 C 23 23
249 Lebanon 13275 C 23 23
250 Lebanon 13276 A 23 23
251 Lebanon 13277 A 23 23
252 Lebanon 13278 A 23 23
253 Lebanon 13279 T 23 23
254 Lebanon 13280 C 23 23
255 Lebanon 13281 C 23 23
256 Lebanon 13282 T 23 23
257 Lebanon 13283 A 23 23
258 Lebanon 13284 A 23 23
259 Lebanon 13285 A 23 23
260 Lebanon 13286 G 23 23
261 Lebanon 13287 G 23 23
262 Lebanon 13288 A 23 23
263 Lebanon 13289 T 23 23
264 Lebanon 13290 T 23 23
265 Lebanon 13291 T 23 23
266 Lebanon 13292 T 23 23
267 Lebanon 13293 G 23 23
268 Lebanon 13294 T 23 23
269 Lebanon 13295 G 23 23
270 Lebanon 13296 A 23 23
271 Lebanon 13297 C 23 23
272 Lebanon 13298 T 23 23
273 Lebanon 13299 T 23 23
274 Lebanon 13300 A 23 23
275 Lebanon 13301 A 23 23
276 Lebanon 13302 A 23 23
277 Lebanon 13303 A 23 23
278 Lebanon 13304 G 23 23
279 Lebanon 13305 G 23 23
280 Lebanon 13306 T 23 23
281 Lebanon 13307 A 23 23
282 Lebanon 13308 A 23 23
283 Lebanon 13309 G 23 23
284 Lebanon 13310 T 23 23
285 Lebanon 13311 A 23 23
286 Lebanon 13312 T 23 23
287 Lebanon 13313 G 23 23
288 Lebanon 13314 T 23 23
289 Lebanon 13315 A 23 23
290 Lebanon 13316 C 23 23
291 Lebanon 13317 A 23 23
292 Lebanon 13318 A 23 23
293 Lebanon 13319 A 23 23
294 Lebanon 13320 T 23 23
295 Lebanon 13321 A 23 23
296 Lebanon 13322 C 23 23
297 Lebanon 13323 C 23 23
298 Lebanon 13324 T 23 23
299 Lebanon 13325 A 23 23
300 Lebanon 13326 C 23 23
301 Lebanon 13327 A 23 23
302 Lebanon 13328 A 23 23
303 Lebanon 13329 C 23 23
304 Lebanon 13330 T 23 23
305 Lebanon 13331 T 23 23
306 Lebanon 13332 G 23 23
307 Lebanon 13333 T 23 23
308 Lebanon 13334 G 23 23
309 Lebanon 13335 C 23 23
310 Lebanon 13336 T 23 23
311 Lebanon 13337 A 23 23
312 Lebanon 13338 A 23 23
313 Lebanon 13339 T 23 23
314 Lebanon 13340 G 23 23
315 Lebanon 13341 A 23 23
316 Lebanon 13342 C 23 23
317 Lebanon 13343 C 23 23
318 Lebanon 13344 C 23 23
319 Lebanon 13345 T 23 23
320 Lebanon 13346 G 23 23
321 Lebanon 13347 T 23 23
322 Lebanon 13348 G 23 23
323 Lebanon 13349 G 23 23
324 Lebanon 13350 G 23 23
325 Lebanon 13351 T 23 23
326 Lebanon 13352 T 23 23
327 Lebanon 13353 T 23 23
328 Lebanon 13354 T 23 23
329 Lebanon 13355 A 23 23
330 Lebanon 13356 C 23 23
331 Lebanon 13357 A 23 23
332 Lebanon 13358 C 23 23
333 Lebanon 13359 T 23 23
334 Lebanon 13360 T 23 23
335 Lebanon 13361 A 23 23
336 Lebanon 13362 A 23 23
337 Lebanon 13363 A 23 23
338 Lebanon 13364 A 23 23
339 Lebanon 13365 A 23 23
340 Lebanon 13366 C 23 23
341 Lebanon 13367 A 23 23
342 Lebanon 13368 C 23 23
343 Lebanon 13369 A 23 23
344 Lebanon 13370 G 23 23
345 Lebanon 13371 T 23 23
346 Lebanon 13372 C 23 23
347 Lebanon 13373 T 23 23
348 Lebanon 13374 G 23 23
349 Lebanon 13375 T 23 23
350 Lebanon 13376 A 23 23
351 Lebanon 13377 C 23 23
352 Lebanon 13378 C 23 23
353 Lebanon 13379 G 23 23
354 Lebanon 13380 T 22 22
355 Lebanon 13381 C T 22 19 Val4372Val
356 Lebanon 13382 T 22 22
357 Lebanon 13383 G 22 22
358 Lebanon 13384 C 21 21
359 Lebanon 13385 G 21 21
360 Lebanon 13386 G 21 21
361 Lebanon 13387 T 21 21
362 Lebanon 13388 A 21 21
363 Lebanon 13389 T 21 21
364 Lebanon 13390 G 21 21
365 Lebanon 13391 T 21 21
366 Lebanon 13392 G 21 21
367 Lebanon 13393 G 21 21
368 Lebanon 13394 A 19 19
369 Lebanon 13395 A 19 19
370 Lebanon 13396 A 19 19
371 Lebanon 13397 G 19 19
372 Lebanon 13398 G 19 19
373 Lebanon 13399 T 19 19
374 Lebanon 13400 T 19 19
375 Lebanon 13401 A 19 19
376 Lebanon 13402 T 19 19
377 Lebanon 13403 G 19 19
378 Lebanon 13404 G 19 19
379 Lebanon 13405 C 19 19
380 Lebanon 13406 T 19 19
381 Lebanon 13407 G 19 19
382 Lebanon 13408 T 19 19
383 Lebanon 13409 A 19 19
384 Lebanon 13410 G 19 19
385 Lebanon 13411 T 19 19
386 Lebanon 13412 T 19 19
387 Lebanon 13413 G 19 19
388 Lebanon 13414 T 19 19
389 Lebanon 13415 G 19 19
390 Lebanon 13416 A 19 19
391 Lebanon 13417 T 19 19
392 Lebanon 13418 C 19 19
393 Lebanon 13419 A 19 19
394 Lebanon 13420 A 19 19
395 Lebanon 13421 C 19 19
396 Lebanon 13422 T 19 19
397 Lebanon 13423 C 19 19
398 Lebanon 13424 C 19 19
399 Lebanon 13425 G 19 19
400 Lebanon 13426 C 19 19
401 Lebanon 13427 G 19 19
402 Lebanon 13428 A 19 19
403 Lebanon 13429 A 19 19
404 Lebanon 13430 C 19 19
405 Lebanon 13431 C 19 19
406 Lebanon 13432 C 19 19
407 Lebanon 13433 A 19 19
408 Lebanon 13434 T 19 19
409 Lebanon 13435 G 19 19
410 Lebanon 13436 C 19 19
411 Lebanon 13437 T 19 19
412 Lebanon 13438 T 19 19
413 Lebanon 13439 C 19 19
414 Lebanon 13440 A 19 19
415 Lebanon 13441 G 19 19