National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                   1    
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                         1     2 1      
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Latvia 13026 C 233 233
1 Latvia 13027 T 233 233
2 Latvia 13028 G 233 233
3 Latvia 13029 G 233 233
4 Latvia 13030 T 233 233
5 Latvia 13031 A 233 233
6 Latvia 13032 A 233 233
7 Latvia 13033 T 233 233
8 Latvia 13034 G 233 233
9 Latvia 13035 C 233 233
10 Latvia 13036 A 233 233
11 Latvia 13037 A 233 233
12 Latvia 13038 C 233 233
13 Latvia 13039 A 233 233
14 Latvia 13040 G 233 233
15 Latvia 13041 A 233 233
16 Latvia 13042 A 233 233
17 Latvia 13043 G 233 233
18 Latvia 13044 T 233 233
19 Latvia 13045 G 233 233
20 Latvia 13046 C 233 233
21 Latvia 13047 C 233 233
22 Latvia 13048 T 233 233
23 Latvia 13049 G 233 233
24 Latvia 13050 C 233 233
25 Latvia 13051 C 233 233
26 Latvia 13052 A 233 233
27 Latvia 13053 A 233 233
28 Latvia 13054 T 233 233
29 Latvia 13055 T 233 233
30 Latvia 13056 C 233 233
31 Latvia 13057 A 233 233
32 Latvia 13058 A 233 233
33 Latvia 13059 C 233 233
34 Latvia 13060 T 233 233
35 Latvia 13061 G 233 233
36 Latvia 13062 T 233 233
37 Latvia 13063 A 233 233
38 Latvia 13064 T 233 233
39 Latvia 13065 T 233 233
40 Latvia 13066 A 233 233
41 Latvia 13067 T 233 233
42 Latvia 13068 C 233 233
43 Latvia 13069 T 233 233
44 Latvia 13070 T 233 233
45 Latvia 13071 T 233 233
46 Latvia 13072 C 233 233
47 Latvia 13073 T 233 233
48 Latvia 13074 G 233 233
49 Latvia 13075 T 233 233
50 Latvia 13076 G 233 233
51 Latvia 13077 C 233 233
52 Latvia 13078 T 233 233
53 Latvia 13079 T 233 233
54 Latvia 13080 T 233 233
55 Latvia 13081 T 233 233
56 Latvia 13082 G 233 233
57 Latvia 13083 C 233 233
58 Latvia 13084 T 233 233
59 Latvia 13085 G 233 233
60 Latvia 13086 T 233 233
61 Latvia 13087 A 233 233
62 Latvia 13088 G 233 233
63 Latvia 13089 A 233 233
64 Latvia 13090 T 233 233
65 Latvia 13091 G 233 233
66 Latvia 13092 C 233 233
67 Latvia 13093 T 233 233
68 Latvia 13094 G 233 233
69 Latvia 13095 C 233 233
70 Latvia 13096 T 233 233
71 Latvia 13097 A 233 233
72 Latvia 13098 A 233 233
73 Latvia 13099 A 233 233
74 Latvia 13100 G 233 233
75 Latvia 13101 C 233 233
76 Latvia 13102 T 233 233
77 Latvia 13103 T 233 233
78 Latvia 13104 A 233 233
79 Latvia 13105 C 233 233
80 Latvia 13106 A 233 233
81 Latvia 13107 A 233 233
82 Latvia 13108 A 233 233
83 Latvia 13109 G 233 233
84 Latvia 13110 A 233 233
85 Latvia 13111 T 233 233
86 Latvia 13112 T 233 233
87 Latvia 13113 A 233 233
88 Latvia 13114 T 233 233
89 Latvia 13115 C 233 233
90 Latvia 13116 T 233 233
91 Latvia 13117 A 233 233
92 Latvia 13118 G 233 233
93 Latvia 13119 C 233 233
94 Latvia 13120 T 233 233
95 Latvia 13121 A 233 233
96 Latvia 13122 G 233 233
97 Latvia 13123 T 233 233
98 Latvia 13124 G 233 233
99 Latvia 13125 G 233 233
100 Latvia 13126 G 233 233
101 Latvia 13127 G 233 233
102 Latvia 13128 G 233 233
103 Latvia 13129 A 233 233
104 Latvia 13130 C 233 233
105 Latvia 13131 A 233 233
106 Latvia 13132 A 233 233
107 Latvia 13133 C 233 233
108 Latvia 13134 C 233 233
109 Latvia 13135 A 233 233
110 Latvia 13136 A 233 233
111 Latvia 13137 T 233 233
112 Latvia 13138 C 233 233
113 Latvia 13139 A 233 233
114 Latvia 13140 C 233 233
115 Latvia 13141 T 233 233
116 Latvia 13142 A 233 233
117 Latvia 13143 A 233 233
118 Latvia 13144 T 233 233
119 Latvia 13145 T 233 233
120 Latvia 13146 G 233 233
121 Latvia 13147 T 233 233
122 Latvia 13148 G 233 233
123 Latvia 13149 T 233 233
124 Latvia 13150 T 233 233
125 Latvia 13151 A 233 233
126 Latvia 13152 A 233 233
127 Latvia 13153 G 233 233
128 Latvia 13154 A 233 233
129 Latvia 13155 T 233 233
130 Latvia 13156 G 233 233
131 Latvia 13157 T 233 233
132 Latvia 13158 T 233 233
133 Latvia 13159 G 233 233
134 Latvia 13160 T 233 233
135 Latvia 13161 G 233 233
136 Latvia 13162 T 233 233
137 Latvia 13163 A 233 233
138 Latvia 13164 C 233 233
139 Latvia 13165 A 233 233
140 Latvia 13166 C 233 233
141 Latvia 13167 A 233 233
142 Latvia 13168 C 233 233
143 Latvia 13169 A 233 233
144 Latvia 13170 C 233 233
145 Latvia 13171 T 233 233
146 Latvia 13172 G 233 233
147 Latvia 13173 G 233 233
148 Latvia 13174 T 233 233
149 Latvia 13175 A 233 233
150 Latvia 13176 C 233 233
151 Latvia 13177 T 233 233
152 Latvia 13178 G 233 233
153 Latvia 13179 G 233 233
154 Latvia 13180 T 233 233
155 Latvia 13181 C 233 233
156 Latvia 13182 A 233 233
157 Latvia 13183 G 233 233
158 Latvia 13184 G 233 233
159 Latvia 13185 C 233 233
160 Latvia 13186 A 233 233
161 Latvia 13187 A 233 233
162 Latvia 13188 T 233 233
163 Latvia 13189 A 233 233
164 Latvia 13190 A 233 233
165 Latvia 13191 C 233 233
166 Latvia 13192 A 233 233
167 Latvia 13193 G 233 233
168 Latvia 13194 T 233 233
169 Latvia 13195 T 233 233
170 Latvia 13196 A 233 233
171 Latvia 13197 C 233 233
172 Latvia 13198 A 233 233
173 Latvia 13199 C A 233 197 Pro4312Thr
174 Latvia 13200 C 233 233
175 Latvia 13201 G A 233 229 Pro4312Pro
176 Latvia 13202 G 233 233
177 Latvia 13203 A 233 233
178 Latvia 13204 A 233 233
179 Latvia 13205 G 233 233
180 Latvia 13206 C 233 233
181 Latvia 13207 C 233 233
182 Latvia 13208 A 233 233
183 Latvia 13209 A 233 233
184 Latvia 13210 T 233 233
185 Latvia 13211 A 233 233
186 Latvia 13212 T 233 233
187 Latvia 13213 G 233 233
188 Latvia 13214 G 233 233
189 Latvia 13215 A 233 233
190 Latvia 13216 T 233 233
191 Latvia 13217 C 233 233
192 Latvia 13218 A 233 233
193 Latvia 13219 A 233 233
194 Latvia 13220 G 233 233
195 Latvia 13221 A 233 233
196 Latvia 13222 A 233 233
197 Latvia 13223 T 233 233
198 Latvia 13224 C 233 233
199 Latvia 13225 C 233 233
200 Latvia 13226 T 233 233
201 Latvia 13227 T 233 233
202 Latvia 13228 T 233 233
203 Latvia 13229 G 233 233
204 Latvia 13230 G 233 233
205 Latvia 13231 T 233 233
206 Latvia 13232 G 233 233
207 Latvia 13233 G 233 233
208 Latvia 13234 T 233 233
209 Latvia 13235 G 233 233
210 Latvia 13236 C 233 233
211 Latvia 13237 A 233 233
212 Latvia 13238 T 233 233
213 Latvia 13239 C 233 233
214 Latvia 13240 G 233 233
215 Latvia 13241 T 233 233
216 Latvia 13242 G 233 233
217 Latvia 13243 T 233 233
218 Latvia 13244 T 233 233
219 Latvia 13245 G 233 233
220 Latvia 13246 T 233 233
221 Latvia 13247 C 233 233
222 Latvia 13248 T 233 233
223 Latvia 13249 G 233 233
224 Latvia 13250 T 233 233
225 Latvia 13251 A 233 233
226 Latvia 13252 C 233 233
227 Latvia 13253 T 233 233
228 Latvia 13254 G 233 233
229 Latvia 13255 C 233 233
230 Latvia 13256 C 233 233
231 Latvia 13257 G 233 233
232 Latvia 13258 T 233 233
233 Latvia 13259 T 233 233
234 Latvia 13260 G 233 233
235 Latvia 13261 C 233 233
236 Latvia 13262 C 233 233
237 Latvia 13263 A 233 233
238 Latvia 13264 C 233 233
239 Latvia 13265 A 233 233
240 Latvia 13266 T 233 233
241 Latvia 13267 A 233 233
242 Latvia 13268 G 233 233
243 Latvia 13269 A 233 233
244 Latvia 13270 T 233 233
245 Latvia 13271 C 233 233
246 Latvia 13272 A 233 233
247 Latvia 13273 T 233 233
248 Latvia 13274 C T 233 232 Pro4337Ser
249 Latvia 13275 C 233 233
250 Latvia 13276 A 233 233
251 Latvia 13277 A 233 233
252 Latvia 13278 A 233 233
253 Latvia 13279 T 233 233
254 Latvia 13280 C 233 233
255 Latvia 13281 C 233 233
256 Latvia 13282 T 233 233
257 Latvia 13283 A 233 233
258 Latvia 13284 A 233 233
259 Latvia 13285 A 233 233
260 Latvia 13286 G 233 233
261 Latvia 13287 G 233 233
262 Latvia 13288 A 233 233
263 Latvia 13289 T 233 233
264 Latvia 13290 T 233 233
265 Latvia 13291 T 233 233
266 Latvia 13292 T 233 233
267 Latvia 13293 G 233 233
268 Latvia 13294 T 233 233
269 Latvia 13295 G 233 233
270 Latvia 13296 A 233 233
271 Latvia 13297 C 233 233
272 Latvia 13298 T 233 233
273 Latvia 13299 T 233 233
274 Latvia 13300 A 233 233
275 Latvia 13301 A 233 233
276 Latvia 13302 A 233 233
277 Latvia 13303 A 233 233
278 Latvia 13304 G 233 233
279 Latvia 13305 G 233 233
280 Latvia 13306 T 233 233
281 Latvia 13307 A 233 233
282 Latvia 13308 A 233 233
283 Latvia 13309 G 233 233
284 Latvia 13310 T 233 233
285 Latvia 13311 A 233 233
286 Latvia 13312 T 233 233
287 Latvia 13313 G 233 233
288 Latvia 13314 T 233 233
289 Latvia 13315 A 233 233
290 Latvia 13316 C 233 233
291 Latvia 13317 A 233 233
292 Latvia 13318 A 233 233
293 Latvia 13319 A 233 233
294 Latvia 13320 T 233 233
295 Latvia 13321 A 233 233
296 Latvia 13322 C 233 233
297 Latvia 13323 C 233 233
298 Latvia 13324 T 233 233
299 Latvia 13325 A 233 233
300 Latvia 13326 C 233 233
301 Latvia 13327 A 233 233
302 Latvia 13328 A 233 233
303 Latvia 13329 C 233 233
304 Latvia 13330 T 233 233
305 Latvia 13331 T 233 233
306 Latvia 13332 G 233 233
307 Latvia 13333 T 233 233
308 Latvia 13334 G 233 233
309 Latvia 13335 C T 233 229 Ala4357Val
310 Latvia 13336 T 233 233
311 Latvia 13337 A 233 233
312 Latvia 13338 A 233 233
313 Latvia 13339 T 233 233
314 Latvia 13340 G 233 233
315 Latvia 13341 A 233 233
316 Latvia 13342 C 233 233
317 Latvia 13343 C 233 233
318 Latvia 13344 C 233 233
319 Latvia 13345 T 233 233
320 Latvia 13346 G 233 233
321 Latvia 13347 T 233 233
322 Latvia 13348 G 233 233
323 Latvia 13349 G 233 233
324 Latvia 13350 G 233 233
325 Latvia 13351 T 233 233
326 Latvia 13352 T 233 233
327 Latvia 13353 T 233 233
328 Latvia 13354 T 233 233
329 Latvia 13355 A 233 233
330 Latvia 13356 C 233 233
331 Latvia 13357 A 233 233
332 Latvia 13358 C 233 233
333 Latvia 13359 T 233 233
334 Latvia 13360 T 233 233
335 Latvia 13361 A 233 233
336 Latvia 13362 A 233 233
337 Latvia 13363 A 233 233
338 Latvia 13364 A 233 233
339 Latvia 13365 A 233 233
340 Latvia 13366 C 233 233
341 Latvia 13367 A 233 233
342 Latvia 13368 C 233 233
343 Latvia 13369 A 233 233
344 Latvia 13370 G 233 233
345 Latvia 13371 T 233 233
346 Latvia 13372 C 233 233
347 Latvia 13373 T 233 233
348 Latvia 13374 G 233 233
349 Latvia 13375 T 233 233
350 Latvia 13376 A 233 233
351 Latvia 13377 C 233 233
352 Latvia 13378 C 233 233
353 Latvia 13379 G 233 233
354 Latvia 13380 T 233 233
355 Latvia 13381 C 233 233
356 Latvia 13382 T 233 233
357 Latvia 13383 G 233 233
358 Latvia 13384 C 233 233
359 Latvia 13385 G 233 233
360 Latvia 13386 G 233 233
361 Latvia 13387 T 233 233
362 Latvia 13388 A 233 233
363 Latvia 13389 T 233 233
364 Latvia 13390 G 233 233
365 Latvia 13391 T 233 233
366 Latvia 13392 G 233 233
367 Latvia 13393 G 233 233
368 Latvia 13394 A 233 233
369 Latvia 13395 A 233 233
370 Latvia 13396 A 233 233
371 Latvia 13397 G 233 233
372 Latvia 13398 G 233 233
373 Latvia 13399 T 233 233
374 Latvia 13400 T 233 233
375 Latvia 13401 A 233 233
376 Latvia 13402 T 233 233
377 Latvia 13403 G 233 233
378 Latvia 13404 G 233 233
379 Latvia 13405 C 233 233
380 Latvia 13406 T 233 233
381 Latvia 13407 G 233 233
382 Latvia 13408 T 233 233
383 Latvia 13409 A 233 233
384 Latvia 13410 G 233 233
385 Latvia 13411 T 233 233
386 Latvia 13412 T 233 233
387 Latvia 13413 G 233 233
388 Latvia 13414 T 233 233
389 Latvia 13415 G 233 233
390 Latvia 13416 A 233 233
391 Latvia 13417 T 233 233
392 Latvia 13418 C 233 233
393 Latvia 13419 A 233 233
394 Latvia 13420 A 233 233
395 Latvia 13421 C 233 233
396 Latvia 13422 T 233 233
397 Latvia 13423 C 233 233
398 Latvia 13424 C 233 233
399 Latvia 13425 G 233 233
400 Latvia 13426 C 233 233
401 Latvia 13427 G 233 233
402 Latvia 13428 A 233 233
403 Latvia 13429 A 233 233
404 Latvia 13430 C T 233 232 Pro4389Ser
405 Latvia 13431 C 233 233
406 Latvia 13432 C 233 233
407 Latvia 13433 A 233 233
408 Latvia 13434 T 233 233
409 Latvia 13435 G 233 233
410 Latvia 13436 C 233 233
411 Latvia 13437 T 233 233
412 Latvia 13438 T 233 233
413 Latvia 13439 C 233 233
414 Latvia 13440 A 233 233
415 Latvia 13441 G 233 233