National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Kuwait 13026 C 8 8
1 Kuwait 13027 T 8 8
2 Kuwait 13028 G 8 8
3 Kuwait 13029 G 8 8
4 Kuwait 13030 T 8 8
5 Kuwait 13031 A 8 8
6 Kuwait 13032 A 8 8
7 Kuwait 13033 T 8 8
8 Kuwait 13034 G 8 8
9 Kuwait 13035 C 8 8
10 Kuwait 13036 A 8 8
11 Kuwait 13037 A 8 8
12 Kuwait 13038 C 8 8
13 Kuwait 13039 A 8 8
14 Kuwait 13040 G 8 8
15 Kuwait 13041 A 8 8
16 Kuwait 13042 A 8 8
17 Kuwait 13043 G 8 8
18 Kuwait 13044 T 8 8
19 Kuwait 13045 G 8 8
20 Kuwait 13046 C 8 8
21 Kuwait 13047 C 8 8
22 Kuwait 13048 T 8 8
23 Kuwait 13049 G 8 8
24 Kuwait 13050 C 8 8
25 Kuwait 13051 C 8 8
26 Kuwait 13052 A 8 8
27 Kuwait 13053 A 8 8
28 Kuwait 13054 T 8 8
29 Kuwait 13055 T 8 8
30 Kuwait 13056 C 8 8
31 Kuwait 13057 A 8 8
32 Kuwait 13058 A 8 8
33 Kuwait 13059 C 8 8
34 Kuwait 13060 T 8 8
35 Kuwait 13061 G 8 8
36 Kuwait 13062 T 8 8
37 Kuwait 13063 A 8 8
38 Kuwait 13064 T 8 8
39 Kuwait 13065 T 8 8
40 Kuwait 13066 A 8 8
41 Kuwait 13067 T 8 8
42 Kuwait 13068 C 8 8
43 Kuwait 13069 T 8 8
44 Kuwait 13070 T 8 8
45 Kuwait 13071 T 8 8
46 Kuwait 13072 C 8 8
47 Kuwait 13073 T 8 8
48 Kuwait 13074 G 8 8
49 Kuwait 13075 T 8 8
50 Kuwait 13076 G 8 8
51 Kuwait 13077 C 8 8
52 Kuwait 13078 T 8 8
53 Kuwait 13079 T 8 8
54 Kuwait 13080 T 8 8
55 Kuwait 13081 T 8 8
56 Kuwait 13082 G 8 8
57 Kuwait 13083 C 8 8
58 Kuwait 13084 T 8 8
59 Kuwait 13085 G 8 8
60 Kuwait 13086 T 8 8
61 Kuwait 13087 A 8 8
62 Kuwait 13088 G 8 8
63 Kuwait 13089 A 8 8
64 Kuwait 13090 T 8 8
65 Kuwait 13091 G 8 8
66 Kuwait 13092 C 8 8
67 Kuwait 13093 T 8 8
68 Kuwait 13094 G 8 8
69 Kuwait 13095 C 8 8
70 Kuwait 13096 T 8 8
71 Kuwait 13097 A 8 8
72 Kuwait 13098 A 8 8
73 Kuwait 13099 A 8 8
74 Kuwait 13100 G 8 8
75 Kuwait 13101 C 8 8
76 Kuwait 13102 T 8 8
77 Kuwait 13103 T 8 8
78 Kuwait 13104 A 8 8
79 Kuwait 13105 C 8 8
80 Kuwait 13106 A 8 8
81 Kuwait 13107 A 8 8
82 Kuwait 13108 A 8 8
83 Kuwait 13109 G 8 8
84 Kuwait 13110 A 8 8
85 Kuwait 13111 T 8 8
86 Kuwait 13112 T 8 8
87 Kuwait 13113 A 8 8
88 Kuwait 13114 T 8 8
89 Kuwait 13115 C 8 8
90 Kuwait 13116 T 8 8
91 Kuwait 13117 A 8 8
92 Kuwait 13118 G 8 8
93 Kuwait 13119 C 8 8
94 Kuwait 13120 T 8 8
95 Kuwait 13121 A 8 8
96 Kuwait 13122 G 8 8
97 Kuwait 13123 T 8 8
98 Kuwait 13124 G 8 8
99 Kuwait 13125 G 8 8
100 Kuwait 13126 G 8 8
101 Kuwait 13127 G 8 8
102 Kuwait 13128 G 8 8
103 Kuwait 13129 A 8 8
104 Kuwait 13130 C 8 8
105 Kuwait 13131 A 8 8
106 Kuwait 13132 A 8 8
107 Kuwait 13133 C 8 8
108 Kuwait 13134 C 8 8
109 Kuwait 13135 A 8 8
110 Kuwait 13136 A 8 8
111 Kuwait 13137 T 8 8
112 Kuwait 13138 C 8 8
113 Kuwait 13139 A 8 8
114 Kuwait 13140 C 8 8
115 Kuwait 13141 T 8 8
116 Kuwait 13142 A 8 8
117 Kuwait 13143 A 8 8
118 Kuwait 13144 T 8 8
119 Kuwait 13145 T 8 8
120 Kuwait 13146 G 8 8
121 Kuwait 13147 T 8 8
122 Kuwait 13148 G 8 8
123 Kuwait 13149 T 8 8
124 Kuwait 13150 T 8 8
125 Kuwait 13151 A 8 8
126 Kuwait 13152 A 8 8
127 Kuwait 13153 G 8 8
128 Kuwait 13154 A 8 8
129 Kuwait 13155 T 8 8
130 Kuwait 13156 G 8 8
131 Kuwait 13157 T 8 8
132 Kuwait 13158 T 8 8
133 Kuwait 13159 G 8 8
134 Kuwait 13160 T 8 8
135 Kuwait 13161 G 8 8
136 Kuwait 13162 T 8 8
137 Kuwait 13163 A 8 8
138 Kuwait 13164 C 8 8
139 Kuwait 13165 A 8 8
140 Kuwait 13166 C 8 8
141 Kuwait 13167 A 8 8
142 Kuwait 13168 C 8 8
143 Kuwait 13169 A 8 8
144 Kuwait 13170 C 8 8
145 Kuwait 13171 T 8 8
146 Kuwait 13172 G 8 8
147 Kuwait 13173 G 8 8
148 Kuwait 13174 T 8 8
149 Kuwait 13175 A 8 8
150 Kuwait 13176 C 8 8
151 Kuwait 13177 T 8 8
152 Kuwait 13178 G 8 8
153 Kuwait 13179 G 8 8
154 Kuwait 13180 T 8 8
155 Kuwait 13181 C 8 8
156 Kuwait 13182 A 8 8
157 Kuwait 13183 G 8 8
158 Kuwait 13184 G 8 8
159 Kuwait 13185 C 8 8
160 Kuwait 13186 A 8 8
161 Kuwait 13187 A 8 8
162 Kuwait 13188 T 8 8
163 Kuwait 13189 A 8 8
164 Kuwait 13190 A 8 8
165 Kuwait 13191 C 8 8
166 Kuwait 13192 A 8 8
167 Kuwait 13193 G 8 8
168 Kuwait 13194 T 8 8
169 Kuwait 13195 T 8 8
170 Kuwait 13196 A 8 8
171 Kuwait 13197 C 8 8
172 Kuwait 13198 A 8 8
173 Kuwait 13199 C 8 8
174 Kuwait 13200 C 8 8
175 Kuwait 13201 G 8 8
176 Kuwait 13202 G 8 8
177 Kuwait 13203 A 8 8
178 Kuwait 13204 A 8 8
179 Kuwait 13205 G 8 8
180 Kuwait 13206 C 8 8
181 Kuwait 13207 C 8 8
182 Kuwait 13208 A 8 8
183 Kuwait 13209 A 8 8
184 Kuwait 13210 T 8 8
185 Kuwait 13211 A 8 8
186 Kuwait 13212 T 8 8
187 Kuwait 13213 G 8 8
188 Kuwait 13214 G 8 8
189 Kuwait 13215 A 8 8
190 Kuwait 13216 T 8 8
191 Kuwait 13217 C 8 8
192 Kuwait 13218 A 8 8
193 Kuwait 13219 A 8 8
194 Kuwait 13220 G 8 8
195 Kuwait 13221 A 8 8
196 Kuwait 13222 A 8 8
197 Kuwait 13223 T 8 8
198 Kuwait 13224 C 8 8
199 Kuwait 13225 C 8 8
200 Kuwait 13226 T 8 8
201 Kuwait 13227 T 8 8
202 Kuwait 13228 T 8 8
203 Kuwait 13229 G 8 8
204 Kuwait 13230 G 8 8
205 Kuwait 13231 T 8 8
206 Kuwait 13232 G 8 8
207 Kuwait 13233 G 8 8
208 Kuwait 13234 T 8 8
209 Kuwait 13235 G 8 8
210 Kuwait 13236 C 8 8
211 Kuwait 13237 A 8 8
212 Kuwait 13238 T 8 8
213 Kuwait 13239 C 8 8
214 Kuwait 13240 G 8 8
215 Kuwait 13241 T 8 8
216 Kuwait 13242 G 8 8
217 Kuwait 13243 T 8 8
218 Kuwait 13244 T 8 8
219 Kuwait 13245 G 8 8
220 Kuwait 13246 T 8 8
221 Kuwait 13247 C 8 8
222 Kuwait 13248 T 8 8
223 Kuwait 13249 G 8 8
224 Kuwait 13250 T 8 8
225 Kuwait 13251 A 8 8
226 Kuwait 13252 C 8 8
227 Kuwait 13253 T 8 8
228 Kuwait 13254 G 8 8
229 Kuwait 13255 C 8 8
230 Kuwait 13256 C 8 8
231 Kuwait 13257 G 8 8
232 Kuwait 13258 T 8 8
233 Kuwait 13259 T 8 8
234 Kuwait 13260 G 8 8
235 Kuwait 13261 C 8 8
236 Kuwait 13262 C 8 8
237 Kuwait 13263 A 8 8
238 Kuwait 13264 C 8 8
239 Kuwait 13265 A 8 8
240 Kuwait 13266 T 8 8
241 Kuwait 13267 A 8 8
242 Kuwait 13268 G 8 8
243 Kuwait 13269 A 8 8
244 Kuwait 13270 T 8 8
245 Kuwait 13271 C 8 8
246 Kuwait 13272 A 8 8
247 Kuwait 13273 T 8 8
248 Kuwait 13274 C 8 8
249 Kuwait 13275 C 8 8
250 Kuwait 13276 A 8 8
251 Kuwait 13277 A 8 8
252 Kuwait 13278 A 8 8
253 Kuwait 13279 T 8 8
254 Kuwait 13280 C 8 8
255 Kuwait 13281 C 8 8
256 Kuwait 13282 T 8 8
257 Kuwait 13283 A 8 8
258 Kuwait 13284 A 8 8
259 Kuwait 13285 A 8 8
260 Kuwait 13286 G 8 8
261 Kuwait 13287 G 8 8
262 Kuwait 13288 A 8 8
263 Kuwait 13289 T 8 8
264 Kuwait 13290 T 8 8
265 Kuwait 13291 T 8 8
266 Kuwait 13292 T 8 8
267 Kuwait 13293 G 8 8
268 Kuwait 13294 T 8 8
269 Kuwait 13295 G 8 8
270 Kuwait 13296 A 8 8
271 Kuwait 13297 C 8 8
272 Kuwait 13298 T 8 8
273 Kuwait 13299 T 8 8
274 Kuwait 13300 A 8 8
275 Kuwait 13301 A 8 8
276 Kuwait 13302 A 8 8
277 Kuwait 13303 A 8 8
278 Kuwait 13304 G 8 8
279 Kuwait 13305 G 8 8
280 Kuwait 13306 T 8 8
281 Kuwait 13307 A 8 8
282 Kuwait 13308 A 8 8
283 Kuwait 13309 G 8 8
284 Kuwait 13310 T 8 8
285 Kuwait 13311 A 8 8
286 Kuwait 13312 T 8 8
287 Kuwait 13313 G 8 8
288 Kuwait 13314 T 8 8
289 Kuwait 13315 A 8 8
290 Kuwait 13316 C 8 8
291 Kuwait 13317 A 8 8
292 Kuwait 13318 A 8 8
293 Kuwait 13319 A 8 8
294 Kuwait 13320 T 8 8
295 Kuwait 13321 A 8 8
296 Kuwait 13322 C 8 8
297 Kuwait 13323 C 8 8
298 Kuwait 13324 T 8 8
299 Kuwait 13325 A 8 8
300 Kuwait 13326 C 8 8
301 Kuwait 13327 A 8 8
302 Kuwait 13328 A 8 8
303 Kuwait 13329 C 8 8
304 Kuwait 13330 T 8 8
305 Kuwait 13331 T 8 8
306 Kuwait 13332 G 8 8
307 Kuwait 13333 T 8 8
308 Kuwait 13334 G 8 8
309 Kuwait 13335 C 8 8
310 Kuwait 13336 T 8 8
311 Kuwait 13337 A 8 8
312 Kuwait 13338 A 8 8
313 Kuwait 13339 T 8 8
314 Kuwait 13340 G 8 8
315 Kuwait 13341 A 8 8
316 Kuwait 13342 C 8 8
317 Kuwait 13343 C 8 8
318 Kuwait 13344 C 8 8
319 Kuwait 13345 T 8 8
320 Kuwait 13346 G 8 8
321 Kuwait 13347 T 8 8
322 Kuwait 13348 G 8 8
323 Kuwait 13349 G 8 8
324 Kuwait 13350 G 8 8
325 Kuwait 13351 T 8 8
326 Kuwait 13352 T 8 8
327 Kuwait 13353 T 8 8
328 Kuwait 13354 T 8 8
329 Kuwait 13355 A 8 8
330 Kuwait 13356 C 8 8
331 Kuwait 13357 A 8 8
332 Kuwait 13358 C 8 8
333 Kuwait 13359 T 8 8
334 Kuwait 13360 T 8 8
335 Kuwait 13361 A 8 8
336 Kuwait 13362 A 8 8
337 Kuwait 13363 A 8 8
338 Kuwait 13364 A 8 8
339 Kuwait 13365 A 8 8
340 Kuwait 13366 C 8 8
341 Kuwait 13367 A 8 8
342 Kuwait 13368 C 8 8
343 Kuwait 13369 A 8 8
344 Kuwait 13370 G 8 8
345 Kuwait 13371 T 8 8
346 Kuwait 13372 C 8 8
347 Kuwait 13373 T 8 8
348 Kuwait 13374 G 8 8
349 Kuwait 13375 T 8 8
350 Kuwait 13376 A 8 8
351 Kuwait 13377 C 8 8
352 Kuwait 13378 C 8 8
353 Kuwait 13379 G 8 8
354 Kuwait 13380 T 8 8
355 Kuwait 13381 C 8 8
356 Kuwait 13382 T 8 8
357 Kuwait 13383 G 8 8
358 Kuwait 13384 C 8 8
359 Kuwait 13385 G 8 8
360 Kuwait 13386 G 8 8
361 Kuwait 13387 T 8 8
362 Kuwait 13388 A 8 8
363 Kuwait 13389 T 8 8
364 Kuwait 13390 G 8 8
365 Kuwait 13391 T 8 8
366 Kuwait 13392 G 8 8
367 Kuwait 13393 G 8 8
368 Kuwait 13394 A 8 8
369 Kuwait 13395 A 8 8
370 Kuwait 13396 A 8 8
371 Kuwait 13397 G 8 8
372 Kuwait 13398 G 8 8
373 Kuwait 13399 T 8 8
374 Kuwait 13400 T 8 8
375 Kuwait 13401 A 8 8
376 Kuwait 13402 T 8 8
377 Kuwait 13403 G 8 8
378 Kuwait 13404 G 8 8
379 Kuwait 13405 C 8 8
380 Kuwait 13406 T 8 8
381 Kuwait 13407 G 8 8
382 Kuwait 13408 T 8 8
383 Kuwait 13409 A 8 8
384 Kuwait 13410 G 8 8
385 Kuwait 13411 T 8 8
386 Kuwait 13412 T 8 8
387 Kuwait 13413 G 8 8
388 Kuwait 13414 T 8 8
389 Kuwait 13415 G 8 8
390 Kuwait 13416 A 8 8
391 Kuwait 13417 T 8 8
392 Kuwait 13418 C 8 8
393 Kuwait 13419 A 8 8
394 Kuwait 13420 A 8 8
395 Kuwait 13421 C 8 8
396 Kuwait 13422 T 8 8
397 Kuwait 13423 C 8 8
398 Kuwait 13424 C 8 8
399 Kuwait 13425 G 8 8
400 Kuwait 13426 C 8 8
401 Kuwait 13427 G 8 8
402 Kuwait 13428 A 8 8
403 Kuwait 13429 A 8 8
404 Kuwait 13430 C 8 8
405 Kuwait 13431 C 8 8
406 Kuwait 13432 C 8 8
407 Kuwait 13433 A 8 8
408 Kuwait 13434 T 8 8
409 Kuwait 13435 G 8 8
410 Kuwait 13436 C 8 8
411 Kuwait 13437 T 8 8
412 Kuwait 13438 T 8 8
413 Kuwait 13439 C 8 8
414 Kuwait 13440 A 8 8
415 Kuwait 13441 G 8 8