National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39           1                            
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                         1              
Q   18                             1          
R   6                                        
S   18                                        
T   39               1                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Jordan 13026 C 579 579
1 Jordan 13027 T 579 579
2 Jordan 13028 G 579 579
3 Jordan 13029 G 579 579
4 Jordan 13030 T 579 579
5 Jordan 13031 A 579 579
6 Jordan 13032 A 579 579
7 Jordan 13033 T 579 579
8 Jordan 13034 G 579 579
9 Jordan 13035 C 579 579
10 Jordan 13036 A 579 579
11 Jordan 13037 A 579 579
12 Jordan 13038 C 579 579
13 Jordan 13039 A 579 579
14 Jordan 13040 G 579 579
15 Jordan 13041 A 579 579
16 Jordan 13042 A 579 579
17 Jordan 13043 G 579 579
18 Jordan 13044 T 579 579
19 Jordan 13045 G 579 579
20 Jordan 13046 C 579 579
21 Jordan 13047 C 579 579
22 Jordan 13048 T 579 579
23 Jordan 13049 G 579 579
24 Jordan 13050 C 579 579
25 Jordan 13051 C 579 579
26 Jordan 13052 A 579 579
27 Jordan 13053 A 579 579
28 Jordan 13054 T 579 579
29 Jordan 13055 T 579 579
30 Jordan 13056 C 579 579
31 Jordan 13057 A 579 579
32 Jordan 13058 A 579 579
33 Jordan 13059 C 579 579
34 Jordan 13060 T 579 579
35 Jordan 13061 G 579 579
36 Jordan 13062 T 579 579
37 Jordan 13063 A 579 579
38 Jordan 13064 T 579 579
39 Jordan 13065 T 579 579
40 Jordan 13066 A 579 579
41 Jordan 13067 T 579 579
42 Jordan 13068 C 579 579
43 Jordan 13069 T 579 579
44 Jordan 13070 T 579 579
45 Jordan 13071 T 579 579
46 Jordan 13072 C 579 579
47 Jordan 13073 T 579 579
48 Jordan 13074 G 579 579
49 Jordan 13075 T 579 579
50 Jordan 13076 G 579 579
51 Jordan 13077 C 579 579
52 Jordan 13078 T 579 579
53 Jordan 13079 T 579 579
54 Jordan 13080 T 579 579
55 Jordan 13081 T 579 579
56 Jordan 13082 G 579 579
57 Jordan 13083 C 579 579
58 Jordan 13084 T 579 579
59 Jordan 13085 G 579 579
60 Jordan 13086 T 579 579
61 Jordan 13087 A 579 579
62 Jordan 13088 G 579 579
63 Jordan 13089 A 579 579
64 Jordan 13090 T 579 579
65 Jordan 13091 G 579 579
66 Jordan 13092 C 579 579
67 Jordan 13093 T 579 579
68 Jordan 13094 G 579 579
69 Jordan 13095 C 579 579
70 Jordan 13096 T 579 579
71 Jordan 13097 A 579 579
72 Jordan 13098 A 579 579
73 Jordan 13099 A 579 579
74 Jordan 13100 G 579 579
75 Jordan 13101 C 579 579
76 Jordan 13102 T 579 579
77 Jordan 13103 T 579 579
78 Jordan 13104 A 579 579
79 Jordan 13105 C 579 579
80 Jordan 13106 A 579 579
81 Jordan 13107 A 579 579
82 Jordan 13108 A 579 579
83 Jordan 13109 G 579 579
84 Jordan 13110 A 579 579
85 Jordan 13111 T 579 579
86 Jordan 13112 T 579 579
87 Jordan 13113 A 579 579
88 Jordan 13114 T 579 579
89 Jordan 13115 C 579 579
90 Jordan 13116 T 579 579
91 Jordan 13117 A 579 579
92 Jordan 13118 G 579 579
93 Jordan 13119 C 579 579
94 Jordan 13120 T 579 579
95 Jordan 13121 A 579 579
96 Jordan 13122 G 579 579
97 Jordan 13123 T 579 579
98 Jordan 13124 G 579 579
99 Jordan 13125 G 579 579
100 Jordan 13126 G T 579 518 Gly4287Gly
101 Jordan 13127 G 579 579
102 Jordan 13128 G 579 579
103 Jordan 13129 A 579 579
104 Jordan 13130 C 579 579
105 Jordan 13131 A 579 579
106 Jordan 13132 A 579 579
107 Jordan 13133 C 579 579
108 Jordan 13134 C 579 579
109 Jordan 13135 A 579 579
110 Jordan 13136 A 579 579
111 Jordan 13137 T 579 579
112 Jordan 13138 C 579 579
113 Jordan 13139 A 579 579
114 Jordan 13140 C 579 579
115 Jordan 13141 T 579 579
116 Jordan 13142 A 579 579
117 Jordan 13143 A 579 579
118 Jordan 13144 T 579 579
119 Jordan 13145 T 579 579
120 Jordan 13146 G 579 579
121 Jordan 13147 T 579 579
122 Jordan 13148 G 579 579
123 Jordan 13149 T 579 579
124 Jordan 13150 T 579 579
125 Jordan 13151 A 579 579
126 Jordan 13152 A 579 579
127 Jordan 13153 G 579 579
128 Jordan 13154 A 579 579
129 Jordan 13155 T 579 579
130 Jordan 13156 G 579 579
131 Jordan 13157 T 579 579
132 Jordan 13158 T 579 579
133 Jordan 13159 G 579 579
134 Jordan 13160 T 579 579
135 Jordan 13161 G 579 579
136 Jordan 13162 T 579 579
137 Jordan 13163 A 579 579
138 Jordan 13164 C 579 579
139 Jordan 13165 A 579 579
140 Jordan 13166 C 579 579
141 Jordan 13167 A 579 579
142 Jordan 13168 C 579 579
143 Jordan 13169 A 579 579
144 Jordan 13170 C T 579 578 Thr4302Ile
145 Jordan 13171 T 579 579
146 Jordan 13172 G 579 579
147 Jordan 13173 G 579 579
148 Jordan 13174 T 579 579
149 Jordan 13175 A 579 579
150 Jordan 13176 C 579 579
151 Jordan 13177 T 579 579
152 Jordan 13178 G 579 579
153 Jordan 13179 G 579 579
154 Jordan 13180 T 579 579
155 Jordan 13181 C 579 579
156 Jordan 13182 A G 579 578 Gln4306Arg
157 Jordan 13183 G 579 579
158 Jordan 13184 G 579 579
159 Jordan 13185 C 579 579
160 Jordan 13186 A 579 579
161 Jordan 13187 A 579 579
162 Jordan 13188 T 579 579
163 Jordan 13189 A 579 579
164 Jordan 13190 A 579 579
165 Jordan 13191 C 579 579
166 Jordan 13192 A 579 579
167 Jordan 13193 G 579 579
168 Jordan 13194 T 579 579
169 Jordan 13195 T 579 579
170 Jordan 13196 A 579 579
171 Jordan 13197 C 579 579
172 Jordan 13198 A 579 579
173 Jordan 13199 C 579 579
174 Jordan 13200 C 579 579
175 Jordan 13201 G T 579 578 Pro4312Pro
176 Jordan 13202 G 579 579
177 Jordan 13203 A 579 579
178 Jordan 13204 A 579 579
179 Jordan 13205 G 579 579
180 Jordan 13206 C 579 579
181 Jordan 13207 C 579 579
182 Jordan 13208 A 579 579
183 Jordan 13209 A 579 579
184 Jordan 13210 T 579 579
185 Jordan 13211 A 579 579
186 Jordan 13212 T 579 579
187 Jordan 13213 G 579 579
188 Jordan 13214 G 579 579
189 Jordan 13215 A 579 579
190 Jordan 13216 T 579 579
191 Jordan 13217 C 579 579
192 Jordan 13218 A 579 579
193 Jordan 13219 A 579 579
194 Jordan 13220 G 579 579
195 Jordan 13221 A 579 579
196 Jordan 13222 A 579 579
197 Jordan 13223 T 579 579
198 Jordan 13224 C 579 579
199 Jordan 13225 C 579 579
200 Jordan 13226 T 579 579
201 Jordan 13227 T 579 579
202 Jordan 13228 T 579 579
203 Jordan 13229 G 579 579
204 Jordan 13230 G 579 579
205 Jordan 13231 T 579 579
206 Jordan 13232 G 579 579
207 Jordan 13233 G 579 579
208 Jordan 13234 T 579 579
209 Jordan 13235 G 579 579
210 Jordan 13236 C 579 579
211 Jordan 13237 A 579 579
212 Jordan 13238 T 579 579
213 Jordan 13239 C 579 579
214 Jordan 13240 G 579 579
215 Jordan 13241 T 579 579
216 Jordan 13242 G 579 579
217 Jordan 13243 T 579 579
218 Jordan 13244 T 579 579
219 Jordan 13245 G 579 579
220 Jordan 13246 T 579 579
221 Jordan 13247 C 579 579
222 Jordan 13248 T 579 579
223 Jordan 13249 G 579 579
224 Jordan 13250 T 579 579
225 Jordan 13251 A 579 579
226 Jordan 13252 C 579 579
227 Jordan 13253 T 579 579
228 Jordan 13254 G 579 579
229 Jordan 13255 C 579 579
230 Jordan 13256 C 579 579
231 Jordan 13257 G 579 579
232 Jordan 13258 T 579 579
233 Jordan 13259 T 579 579
234 Jordan 13260 G 579 579
235 Jordan 13261 C 579 579
236 Jordan 13262 C 579 579
237 Jordan 13263 A 579 579
238 Jordan 13264 C 579 579
239 Jordan 13265 A 579 579
240 Jordan 13266 T 579 579
241 Jordan 13267 A 579 579
242 Jordan 13268 G 579 579
243 Jordan 13269 A 579 579
244 Jordan 13270 T 579 579
245 Jordan 13271 C 579 579
246 Jordan 13272 A 579 579
247 Jordan 13273 T 579 579
248 Jordan 13274 C 579 579
249 Jordan 13275 C 579 579
250 Jordan 13276 A 579 579
251 Jordan 13277 A 579 579
252 Jordan 13278 A 579 579
253 Jordan 13279 T 579 579
254 Jordan 13280 C 579 579
255 Jordan 13281 C 579 579
256 Jordan 13282 T 579 579
257 Jordan 13283 A 579 579
258 Jordan 13284 A 579 579
259 Jordan 13285 A 579 579
260 Jordan 13286 G 579 579
261 Jordan 13287 G 579 579
262 Jordan 13288 A 579 579
263 Jordan 13289 T 579 579
264 Jordan 13290 T 579 579
265 Jordan 13291 T 579 579
266 Jordan 13292 T 579 579
267 Jordan 13293 G 579 579
268 Jordan 13294 T 579 579
269 Jordan 13295 G 579 579
270 Jordan 13296 A 579 579
271 Jordan 13297 C 579 579
272 Jordan 13298 T 579 579
273 Jordan 13299 T 579 579
274 Jordan 13300 A 579 579
275 Jordan 13301 A 579 579
276 Jordan 13302 A 579 579
277 Jordan 13303 A 579 579
278 Jordan 13304 G 579 579
279 Jordan 13305 G 579 579
280 Jordan 13306 T 579 579
281 Jordan 13307 A 579 579
282 Jordan 13308 A 579 579
283 Jordan 13309 G 579 579
284 Jordan 13310 T 579 579
285 Jordan 13311 A 579 579
286 Jordan 13312 T 579 579
287 Jordan 13313 G 579 579
288 Jordan 13314 T 579 579
289 Jordan 13315 A 579 579
290 Jordan 13316 C 579 579
291 Jordan 13317 A 579 579
292 Jordan 13318 A 579 579
293 Jordan 13319 A 579 579
294 Jordan 13320 T 579 579
295 Jordan 13321 A 579 579
296 Jordan 13322 C 579 579
297 Jordan 13323 C 579 579
298 Jordan 13324 T 579 579
299 Jordan 13325 A 579 579
300 Jordan 13326 C 579 579
301 Jordan 13327 A 579 579
302 Jordan 13328 A 579 579
303 Jordan 13329 C 579 579
304 Jordan 13330 T 579 579
305 Jordan 13331 T 579 579
306 Jordan 13332 G 579 579
307 Jordan 13333 T 579 579
308 Jordan 13334 G 579 579
309 Jordan 13335 C 579 579
310 Jordan 13336 T 579 579
311 Jordan 13337 A 579 579
312 Jordan 13338 A 579 579
313 Jordan 13339 T 579 579
314 Jordan 13340 G 579 579
315 Jordan 13341 A 579 579
316 Jordan 13342 C 579 579
317 Jordan 13343 C 579 579
318 Jordan 13344 C 579 579
319 Jordan 13345 T 579 579
320 Jordan 13346 G 579 579
321 Jordan 13347 T 579 579
322 Jordan 13348 G 579 579
323 Jordan 13349 G 579 579
324 Jordan 13350 G 579 579
325 Jordan 13351 T 579 579
326 Jordan 13352 T 579 579
327 Jordan 13353 T 579 579
328 Jordan 13354 T 579 579
329 Jordan 13355 A 579 579
330 Jordan 13356 C 579 579
331 Jordan 13357 A 579 579
332 Jordan 13358 C 579 579
333 Jordan 13359 T 579 579
334 Jordan 13360 T 579 579
335 Jordan 13361 A 579 579
336 Jordan 13362 A 579 579
337 Jordan 13363 A 579 579
338 Jordan 13364 A 579 579
339 Jordan 13365 A 579 579
340 Jordan 13366 C 579 579
341 Jordan 13367 A 579 579
342 Jordan 13368 C 579 579
343 Jordan 13369 A 579 579
344 Jordan 13370 G 579 579
345 Jordan 13371 T 579 579
346 Jordan 13372 C 579 579
347 Jordan 13373 T 579 579
348 Jordan 13374 G 579 579
349 Jordan 13375 T 579 579
350 Jordan 13376 A 579 579
351 Jordan 13377 C 579 579
352 Jordan 13378 C 579 579
353 Jordan 13379 G 579 579
354 Jordan 13380 T 579 579
355 Jordan 13381 C 579 579
356 Jordan 13382 T 579 579
357 Jordan 13383 G 579 579
358 Jordan 13384 C 579 579
359 Jordan 13385 G 579 579
360 Jordan 13386 G 579 579
361 Jordan 13387 T 579 579
362 Jordan 13388 A 579 579
363 Jordan 13389 T 579 579
364 Jordan 13390 G 579 579
365 Jordan 13391 T 579 579
366 Jordan 13392 G 579 579
367 Jordan 13393 G 579 579
368 Jordan 13394 A 579 579
369 Jordan 13395 A 579 579
370 Jordan 13396 A 579 579
371 Jordan 13397 G 579 579
372 Jordan 13398 G 579 579
373 Jordan 13399 T 579 579
374 Jordan 13400 T 579 579
375 Jordan 13401 A 579 579
376 Jordan 13402 T 579 579
377 Jordan 13403 G 579 579
378 Jordan 13404 G 579 579
379 Jordan 13405 C 579 579
380 Jordan 13406 T 579 579
381 Jordan 13407 G 579 579
382 Jordan 13408 T 579 579
383 Jordan 13409 A 579 579
384 Jordan 13410 G 579 579
385 Jordan 13411 T 579 579
386 Jordan 13412 T 579 579
387 Jordan 13413 G 579 579
388 Jordan 13414 T 579 579
389 Jordan 13415 G 579 579
390 Jordan 13416 A 579 579
391 Jordan 13417 T 579 579
392 Jordan 13418 C 579 579
393 Jordan 13419 A 579 579
394 Jordan 13420 A 579 579
395 Jordan 13421 C 579 579
396 Jordan 13422 T 579 579
397 Jordan 13423 C 579 579
398 Jordan 13424 C 579 579
399 Jordan 13425 G 579 579
400 Jordan 13426 C 579 579
401 Jordan 13427 G 579 579
402 Jordan 13428 A 579 579
403 Jordan 13429 A 579 579
404 Jordan 13430 C 579 579
405 Jordan 13431 C 579 579
406 Jordan 13432 C 579 579
407 Jordan 13433 A 579 579
408 Jordan 13434 T 579 579
409 Jordan 13435 G 579 579
410 Jordan 13436 C 579 579
411 Jordan 13437 T 579 579
412 Jordan 13438 T 579 579
413 Jordan 13439 C 579 579
414 Jordan 13440 A 579 579
415 Jordan 13441 G 579 579