National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 3                             2   2    
C   39   2                                    
D   21     4                                  
E   12       2                                
F   15                                        
G   39           2                            
H   9             3                         1
I   12               1                 1      
K   24                 2     1                
L   24         1         5                    
M   12                                 1      
N   21                       2       1        
P   24                         6     2        
Q   18                                        
R   6   1         1               1 1        
S   18                                        
T   39 1             7                 3      
V   27               1                   5    
W   3                                        
Y   15                                       3

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Japan 13026 C 17032 17032
1 Japan 13027 T 17032 17032
2 Japan 13028 G 17032 17032
3 Japan 13029 G 17032 17032
4 Japan 13030 T 17032 17032
5 Japan 13031 A 17032 17032
6 Japan 13032 A 17032 17032
7 Japan 13033 T 17032 17032
8 Japan 13034 G 17032 17032
9 Japan 13035 C 17032 17032
10 Japan 13036 A 17032 17032
11 Japan 13037 A 17032 17032
12 Japan 13038 C T 17032 17031 Thr4258Ile
13 Japan 13039 A 17032 17032
14 Japan 13040 G 17032 17032
15 Japan 13041 A 17032 17032
16 Japan 13042 A G 17032 17031 Glu4259Glu
17 Japan 13043 G 17032 17032
18 Japan 13044 T 17032 17032
19 Japan 13045 G T 17032 17030 Val4260Val
20 Japan 13046 C 17032 17032
21 Japan 13047 C 17032 17032
22 Japan 13048 T C 17032 17031 Pro4261Pro
23 Japan 13049 G 17032 17032
24 Japan 13050 C 17032 17032
25 Japan 13051 C T 17032 17007 Ala4262Ala
26 Japan 13052 A 17032 17032
27 Japan 13053 A 17032 17032
28 Japan 13054 T C 17032 17030 Asn4263Asn
29 Japan 13055 T 17032 17032
30 Japan 13056 C 17032 17032
31 Japan 13057 A 17032 17032
32 Japan 13058 A 17032 17032
33 Japan 13059 C T 17032 17030 Thr4265Ile
34 Japan 13060 T 17032 17032
35 Japan 13061 G 17032 17032
36 Japan 13062 T 17032 17032
37 Japan 13063 A 17032 17032
38 Japan 13064 T 17032 17032
39 Japan 13065 T 17032 17032
40 Japan 13066 A 17032 17032
41 Japan 13067 T 17032 17032
42 Japan 13068 C 17032 17032
43 Japan 13069 T 17032 17032
44 Japan 13070 T 17032 17032
45 Japan 13071 T 17032 17032
46 Japan 13072 C 17032 17032
47 Japan 13073 T 17032 17032
48 Japan 13074 G 17032 17032
49 Japan 13075 T C 17032 17030 Cys4270Cys
50 Japan 13076 G 17032 17032
51 Japan 13077 C 17032 17032
52 Japan 13078 T 17032 17032
53 Japan 13079 T 17032 17032
54 Japan 13080 T 17032 17032
55 Japan 13081 T 17032 17032
56 Japan 13082 G T 17032 17031 Ala4273Ser
57 Japan 13083 C 17032 17032
58 Japan 13084 T 17032 17032
59 Japan 13085 G 17032 17032
60 Japan 13086 T 17032 17032
61 Japan 13087 A 17032 17032
62 Japan 13088 G 17032 17032
63 Japan 13089 A 17032 17032
64 Japan 13090 T C 17032 17031 Asp4275Asp
65 Japan 13091 G 17032 17032
66 Japan 13092 C 17032 17032
67 Japan 13093 T C 17032 17030 Ala4276Ala
68 Japan 13094 G T 17032 17031 Ala4277Ser
69 Japan 13095 C 17032 17032
70 Japan 13096 T 17032 17032
71 Japan 13097 A 17032 17032
72 Japan 13098 A 17032 17032
73 Japan 13099 A 17032 17032
74 Japan 13100 G 17032 17032
75 Japan 13101 C 17032 17032
76 Japan 13102 T 17032 17032
77 Japan 13103 T 17032 17032
78 Japan 13104 A 17032 17032
79 Japan 13105 C T 17032 17023 Tyr4280Tyr
80 Japan 13106 A 17032 17032
81 Japan 13107 A 17032 17032
82 Japan 13108 A 17032 17032
83 Japan 13109 G 17032 17032
84 Japan 13110 A 17032 17032
85 Japan 13111 T 17032 17032
86 Japan 13112 T 17032 17032
87 Japan 13113 A 17032 17032
88 Japan 13114 T 17032 17032
89 Japan 13115 C T 17032 16888 Leu4284Leu
90 Japan 13116 T 17032 17032
91 Japan 13117 A 17032 17032
92 Japan 13118 G 17032 17032
93 Japan 13119 C T 17032 17028 Ala4285Val
94 Japan 13120 T 17032 17032
95 Japan 13121 A 17032 17032
96 Japan 13122 G 17032 17032
97 Japan 13123 T 17032 17032
98 Japan 13124 G 17032 17032
99 Japan 13125 G 17032 17032
100 Japan 13126 G A 17032 17028 Gly4287Gly
101 Japan 13127 G 17032 17032
102 Japan 13128 G 17032 17032
103 Japan 13129 A G 17032 17031 Gly4288Gly
104 Japan 13130 C 17032 17032
105 Japan 13131 A 17032 17032
106 Japan 13132 A 17032 17032
107 Japan 13133 C 17032 17032
108 Japan 13134 C 17032 17032
109 Japan 13135 A 17032 17032
110 Japan 13136 A 17032 17032
111 Japan 13137 T 17032 17032
112 Japan 13138 C T 17032 17031 Ile4291Ile
113 Japan 13139 A 17032 17032
114 Japan 13140 C 17032 17032
115 Japan 13141 T 17032 17032
116 Japan 13142 A 17032 17032
117 Japan 13143 A 17032 17032
118 Japan 13144 T 17032 17032
119 Japan 13145 T 17032 17032
120 Japan 13146 G 17032 17032
121 Japan 13147 T 17032 17032
122 Japan 13148 G 17032 17032
123 Japan 13149 T 17032 17032
124 Japan 13150 T 17032 17032
125 Japan 13151 A 17032 17032
126 Japan 13152 A 17032 17032
127 Japan 13153 G 17032 17032
128 Japan 13154 A 17032 17032
129 Japan 13155 T 17032 17032
130 Japan 13156 G 17032 17032
131 Japan 13157 T C 17032 17031 Leu4298Leu
132 Japan 13158 T 17032 17032
133 Japan 13159 G 17032 17032
134 Japan 13160 T 17032 17032
135 Japan 13161 G 17032 17032
136 Japan 13162 T 17032 17032
137 Japan 13163 A 17032 17032
138 Japan 13164 C 17032 17032
139 Japan 13165 A 17032 17032
140 Japan 13166 C T 17032 17027 His4301Tyr
141 Japan 13167 A 17032 17032
142 Japan 13168 C T 17032 17031 His4301His
143 Japan 13169 A 17032 17032
144 Japan 13170 C T 17032 17030 Thr4302Ile
145 Japan 13171 T 17032 17032
146 Japan 13172 G 17032 17032
147 Japan 13173 G 17032 17032
148 Japan 13174 T 17032 17032
149 Japan 13175 A 17032 17032
150 Japan 13176 C T 17032 17031 Thr4304Ile
151 Japan 13177 T 17032 17032
152 Japan 13178 G 17032 17032
153 Japan 13179 G 17032 17032
154 Japan 13180 T 17032 17032
155 Japan 13181 C 17032 17032
156 Japan 13182 A 17032 17032
157 Japan 13183 G 17032 17032
158 Japan 13184 G 17032 17032
159 Japan 13185 C 17032 17032
160 Japan 13186 A 17032 17032
161 Japan 13187 A 17032 17032
162 Japan 13188 T C 17032 17031 Ile4308Thr
163 Japan 13189 A 17032 17032
164 Japan 13190 A G 17032 17031 Thr4309Ala
165 Japan 13191 C 17032 17032
166 Japan 13192 A 17032 17032
167 Japan 13193 G 17032 17032
168 Japan 13194 T 17032 17032
169 Japan 13195 T 17032 17032
170 Japan 13196 A 17032 17032
171 Japan 13197 C T 17032 17031 Thr4311Ile
172 Japan 13198 A 17032 17032
173 Japan 13199 C 17032 17032
174 Japan 13200 C 17032 17032
175 Japan 13201 G A,T 17032 16968 Pro4312Pro-p.Pro4312Pro
176 Japan 13202 G 17032 17032
177 Japan 13203 A 17032 17032
178 Japan 13204 A 17032 17032
179 Japan 13205 G 17032 17032
180 Japan 13206 C 17032 17032
181 Japan 13207 C 17032 17032
182 Japan 13208 A 17032 17032
183 Japan 13209 A G 17032 17031 Asn4315Ser
184 Japan 13210 T 17032 17032
185 Japan 13211 A 17032 17032
186 Japan 13212 T 17032 17032
187 Japan 13213 G 17032 17032
188 Japan 13214 G 17032 17032
189 Japan 13215 A 17032 17032
190 Japan 13216 T C 17032 17031 Asp4317Asp
191 Japan 13217 C 17032 17032
192 Japan 13218 A 17032 17032
193 Japan 13219 A 17032 17032
194 Japan 13220 G 17032 17032
195 Japan 13221 A 17032 17032
196 Japan 13222 A G 17032 17028 Glu4319Glu
197 Japan 13223 T 17032 17032
198 Japan 13224 C 17032 17032
199 Japan 13225 C 17032 17032
200 Japan 13226 T 17032 17032
201 Japan 13227 T 17032 17032
202 Japan 13228 T 17032 17032
203 Japan 13229 G 17032 17032
204 Japan 13230 G 17032 17032
205 Japan 13231 T 17032 17032
206 Japan 13232 G 17032 17032
207 Japan 13233 G 17032 17032
208 Japan 13234 T 17032 17032
209 Japan 13235 G 17032 17032
210 Japan 13236 C 17032 17032
211 Japan 13237 A C 17032 17031 Ala4324Ala
212 Japan 13238 T 17032 17032
213 Japan 13239 C 17032 17032
214 Japan 13240 G 17032 17032
215 Japan 13241 T 17032 17032
216 Japan 13242 G 17032 17032
217 Japan 13243 T 17032 17032
218 Japan 13244 T 17032 17032
219 Japan 13245 G 17032 17032
220 Japan 13246 T 17032 17032
221 Japan 13247 C T 17032 17031 Leu4328Leu
222 Japan 13248 T 17032 17032
223 Japan 13249 G T 17032 17030 Leu4328Leu
224 Japan 13250 T 17032 17032
225 Japan 13251 A 17032 17032
226 Japan 13252 C T 17032 17029 Tyr4329Tyr
227 Japan 13253 T 17032 17032
228 Japan 13254 G 17033 17033
229 Japan 13255 C T 17033 17030 Cys4330Cys
230 Japan 13256 C 17033 17033
231 Japan 13257 G 17033 17033
232 Japan 13258 T 17033 17033
233 Japan 13259 T 17033 17033
234 Japan 13260 G 17033 17033
235 Japan 13261 C 17033 17033
236 Japan 13262 C 17033 17033
237 Japan 13263 A 17033 17033
238 Japan 13264 C T 17033 17032 His4333His
239 Japan 13265 A 17033 17033
240 Japan 13266 T 17033 17033
241 Japan 13267 A 17033 17033
242 Japan 13268 G 17033 17033
243 Japan 13269 A 17033 17033
244 Japan 13270 T 17033 17033
245 Japan 13271 C 17033 17033
246 Japan 13272 A 17033 17033
247 Japan 13273 T C 17033 17032 His4336His
248 Japan 13274 C T 17033 17023 Pro4337Ser
249 Japan 13275 C 17033 17033
250 Japan 13276 A G 17033 17032 Pro4337Pro
251 Japan 13277 A 17033 17033
252 Japan 13278 A 17033 17033
253 Japan 13279 T 17033 17033
254 Japan 13280 C 17033 17033
255 Japan 13281 C 17033 17033
256 Japan 13282 T 17033 17033
257 Japan 13283 A 17033 17033
258 Japan 13284 A 17033 17033
259 Japan 13285 A 17033 17033
260 Japan 13286 G 17033 17033
261 Japan 13287 G 17033 17033
262 Japan 13288 A 17033 17033
263 Japan 13289 T 17033 17033
264 Japan 13290 T 17033 17033
265 Japan 13291 T 17033 17033
266 Japan 13292 T 17033 17033
267 Japan 13293 G 17033 17033
268 Japan 13294 T 17033 17033
269 Japan 13295 G 17033 17033
270 Japan 13296 A 17033 17033
271 Japan 13297 C T 17033 17023 Asp4344Asp
272 Japan 13298 T 17033 17033
273 Japan 13299 T 17033 17033
274 Japan 13300 A 17033 17033
275 Japan 13301 A 17033 17033
276 Japan 13302 A 17033 17033
277 Japan 13303 A G 17033 17032 Lys4346Lys
278 Japan 13304 G 17033 17033
279 Japan 13305 G 17033 17033
280 Japan 13306 T 17033 17033
281 Japan 13307 A 17033 17033
282 Japan 13308 A 17033 17033
283 Japan 13309 G T 17033 17030 Lys4348Asn
284 Japan 13310 T 17033 17033
285 Japan 13311 A 17033 17033
286 Japan 13312 T 17033 17033
287 Japan 13313 G 17033 17033
288 Japan 13314 T 17033 17033
289 Japan 13315 A G 17033 16942 Val4350Val
290 Japan 13316 C 17033 17033
291 Japan 13317 A 17033 17033
292 Japan 13318 A 17033 17033
293 Japan 13319 A 17033 17033
294 Japan 13320 T 17033 17033
295 Japan 13321 A 17033 17033
296 Japan 13322 C 17033 17033
297 Japan 13323 C 17033 17033
298 Japan 13324 T 17033 17033
299 Japan 13325 A 17033 17033
300 Japan 13326 C 17033 17033
301 Japan 13327 A 17033 17033
302 Japan 13328 A 17033 17033
303 Japan 13329 C T 17033 17028 Thr4355Ile
304 Japan 13330 T G 17033 17032 Thr4355Thr
305 Japan 13331 T 17033 17033
306 Japan 13332 G 17033 17033
307 Japan 13333 T 17033 17033
308 Japan 13334 G 17033 17033
309 Japan 13335 C T 17033 17031 Ala4357Val
310 Japan 13336 T 17033 17033
311 Japan 13337 A 17033 17033
312 Japan 13338 A 17033 17033
313 Japan 13339 T 17033 17033
314 Japan 13340 G 17033 17033
315 Japan 13341 A 17033 17033
316 Japan 13342 C 17033 17033
317 Japan 13343 C 17033 17033
318 Japan 13344 C 17033 17033
319 Japan 13345 T C 17033 17029 Pro4360Pro
320 Japan 13346 G 17033 17033
321 Japan 13347 T 17033 17033
322 Japan 13348 G T 17033 17031 Val4361Val
323 Japan 13349 G 17033 17033
324 Japan 13350 G 17033 17033
325 Japan 13351 T 17033 17033
326 Japan 13352 T 17033 17033
327 Japan 13353 T 17033 17033
328 Japan 13354 T 17033 17033
329 Japan 13355 A 17033 17033
330 Japan 13356 C T 17033 17032 Thr4364Ile
331 Japan 13357 A 17033 17033
332 Japan 13358 C 17033 17033
333 Japan 13359 T 17033 17033
334 Japan 13360 T 17033 17033
335 Japan 13361 A 17033 17033
336 Japan 13362 A 17033 17033
337 Japan 13363 A G 17033 17031 Lys4366Lys
338 Japan 13364 A 17033 17033
339 Japan 13365 A 17033 17033
340 Japan 13366 C T 17033 16774 Asn4367Asn
341 Japan 13367 A 17033 17033
342 Japan 13368 C 17033 17033
343 Japan 13369 A 17033 17033
344 Japan 13370 G 17033 17033
345 Japan 13371 T 17033 17033
346 Japan 13372 C T 17033 17031 Val4369Val
347 Japan 13373 T 17033 17033
348 Japan 13374 G 17033 17032
349 Japan 13375 T 17033 17033
350 Japan 13376 A 17033 17033
351 Japan 13377 C 17033 17033
352 Japan 13378 C T,A 17033 17030 Thr4371Thr-p.Thr4371Thr
353 Japan 13379 G A 17033 17032 Val4372Ile
354 Japan 13380 T 17033 17033
355 Japan 13381 C T 17033 17030 Val4372Val
356 Japan 13382 T 17033 17033
357 Japan 13383 G 17033 17033
358 Japan 13384 C 17033 17033
359 Japan 13385 G 17033 17033
360 Japan 13386 G 17033 17033
361 Japan 13387 T 17033 17033
362 Japan 13388 A 17033 17033
363 Japan 13389 T C 17033 17032 Met4375Thr
364 Japan 13390 G 17033 17033
365 Japan 13391 T 17033 17033
366 Japan 13392 G 17033 17033
367 Japan 13393 G 17033 17033
368 Japan 13394 A 17033 17033
369 Japan 13395 A 17033 17033
370 Japan 13396 A 17033 17033
371 Japan 13397 G 17033 17033
372 Japan 13398 G 17033 17033
373 Japan 13399 T 17033 17033
374 Japan 13400 T 17032 17032
375 Japan 13401 A 17032 17032
376 Japan 13402 T C 17032 17031 Tyr4379Tyr
377 Japan 13403 G 17032 17032
378 Japan 13404 G 17032 17032
379 Japan 13405 C 17032 17032
380 Japan 13406 T 17032 17032
381 Japan 13407 G 17032 17032
382 Japan 13408 T 17032 17032
383 Japan 13409 A 17032 17032
384 Japan 13410 G 17032 17032
385 Japan 13411 T 17032 17032
386 Japan 13412 T 17032 17032
387 Japan 13413 G 17032 17032
388 Japan 13414 T 17032 17032
389 Japan 13415 G 17032 17032
390 Japan 13416 A 17032 17032
391 Japan 13417 T C 17032 17031 Asp4384Asp
392 Japan 13418 C 17032 17032
393 Japan 13419 A 17032 17032
394 Japan 13420 A 17032 17032
395 Japan 13421 C T 17032 17030 Leu4386Phe
396 Japan 13422 T 17032 17032
397 Japan 13423 C T 17032 17012 Leu4386Leu
398 Japan 13424 C T,A 17032 17030 Arg4387Cys-p.Arg4387Ser
399 Japan 13425 G A 17032 17031 Arg4387His
400 Japan 13426 C T 17032 17028 Arg4387Arg
401 Japan 13427 G 17032 17032
402 Japan 13428 A 17032 17032
403 Japan 13429 A 17032 17032
404 Japan 13430 C T 17032 16991 Pro4389Ser
405 Japan 13431 C 17032 17032
406 Japan 13432 C T 17032 17030 Pro4389Pro
407 Japan 13433 A 17032 17032
408 Japan 13434 T 17032 17032
409 Japan 13435 G 17032 17032
410 Japan 13436 C 17032 17032
411 Japan 13437 T 17032 17032
412 Japan 13438 T 17032 17032
413 Japan 13439 C 17032 17032
414 Japan 13440 A 17032 17032
415 Japan 13441 G 17032 17032