National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*                                              
-     416                                        
?                                              
A     38                                   2    
C     39   1                                    
D     21     2                                  
E     12     1                                  
F     15                                        
G     39   1                         1          
H     9             2                          
I     12                 1                      
K     24                             1          
L     24         1         4                    
M     12                                        
N     21                 1             1        
P     24                   2     2     1 1      
Q 1   18                                        
R     6   1                         1          
S     18                               2        
T     39 1             4                 1      
V     27         1                         2    
W     3                                        
Y     15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Italy 13026 C 2962 2962
1 Italy 13027 T 2962 2961
2 Italy 13028 G 2963 2963
3 Italy 13029 G 2963 2963
4 Italy 13030 T 2963 2963
5 Italy 13031 A 2963 2963
6 Italy 13032 A 2963 2963
7 Italy 13033 T A 2963 2962 Asn4256Lys
8 Italy 13034 G 2963 2963
9 Italy 13035 C T 2963 2962 Ala4257Val
10 Italy 13036 A 2963 2963
11 Italy 13037 A 2963 2963
12 Italy 13038 C 2963 2963
13 Italy 13039 A 2963 2963
14 Italy 13040 G 2963 2963
15 Italy 13041 A 2963 2963
16 Italy 13042 A 2963 2963
17 Italy 13043 G 2963 2963
18 Italy 13044 T 2963 2963
19 Italy 13045 G 2963 2963
20 Italy 13046 C 2963 2963
21 Italy 13047 C 2963 2963
22 Italy 13048 T 2963 2963
23 Italy 13049 G 2963 2963
24 Italy 13050 C 2963 2963
25 Italy 13051 C 2963 2963
26 Italy 13052 A 2963 2963
27 Italy 13053 A 2963 2963
28 Italy 13054 T 2963 2963
29 Italy 13055 T 2963 2963
30 Italy 13056 C 2963 2963
31 Italy 13057 A G 2963 2962 Ser4264Ser
32 Italy 13058 A 2963 2963
33 Italy 13059 C 2963 2963
34 Italy 13060 T 2963 2963
35 Italy 13061 G 2963 2963
36 Italy 13062 T 2963 2963
37 Italy 13063 A 2963 2963
38 Italy 13064 T 2963 2963
39 Italy 13065 T 2963 2963
40 Italy 13066 A G 2963 2961 Leu4267Leu
41 Italy 13067 T 2963 2962
42 Italy 13068 C 2963 2962
43 Italy 13069 T 2963 2961
44 Italy 13070 T 2963 2961
45 Italy 13071 T 2963 2961
46 Italy 13072 C 2963 2961
47 Italy 13073 T 2963 2961
48 Italy 13074 G 2963 2961
49 Italy 13075 T 2963 2961
50 Italy 13076 G 2963 2961
51 Italy 13077 C 2963 2961
52 Italy 13078 T 2963 2960
53 Italy 13079 T 2963 2960
54 Italy 13080 T 2963 2960
55 Italy 13081 T 2963 2960
56 Italy 13082 G 2963 2960
57 Italy 13083 C 2963 2960
58 Italy 13084 T 2963 2960
59 Italy 13085 G 2963 2960
60 Italy 13086 T 2963 2960
61 Italy 13087 A 2963 2960
62 Italy 13088 G 2963 2960
63 Italy 13089 A 2963 2959
64 Italy 13090 T 2963 2959
65 Italy 13091 G 2963 2962
66 Italy 13092 C 2963 2962
67 Italy 13093 T 2963 2962
68 Italy 13094 G 2963 2962
69 Italy 13095 C 2963 2962
70 Italy 13096 T 2963 2962
71 Italy 13097 A 2963 2962
72 Italy 13098 A 2963 2962
73 Italy 13099 A 2963 2962
74 Italy 13100 G 2963 2962
75 Italy 13101 C 2963 2962
76 Italy 13102 T 2963 2962
77 Italy 13103 T 2963 2962
78 Italy 13104 A 2964 2963
79 Italy 13105 C 2964 2963
80 Italy 13106 A 2964 2963
81 Italy 13107 A 2964 2963
82 Italy 13108 A 2964 2963
83 Italy 13109 G 2964 2963
84 Italy 13110 A 2964 2963
85 Italy 13111 T 2964 2963
86 Italy 13112 T 2964 2963
87 Italy 13113 A 2964 2963
88 Italy 13114 T 2964 2963
89 Italy 13115 C T 2964 2958 Leu4284Leu
90 Italy 13116 T 2964 2963
91 Italy 13117 A 2964 2963
92 Italy 13118 G 2964 2963
93 Italy 13119 C 2964 2963
94 Italy 13120 T 2964 2963
95 Italy 13121 A 2964 2963
96 Italy 13122 G 2964 2964
97 Italy 13123 T 2964 2963
98 Italy 13124 G 2964 2964
99 Italy 13125 G 2964 2964
100 Italy 13126 G 2964 2963
101 Italy 13127 G 2964 2964
102 Italy 13128 G 2964 2964
103 Italy 13129 A 2964 2964
104 Italy 13130 C 2964 2964
105 Italy 13131 A 2964 2963
106 Italy 13132 A 2964 2963
107 Italy 13133 C 2964 2963
108 Italy 13134 C 2964 2963
109 Italy 13135 A 2964 2963
110 Italy 13136 A 2964 2963
111 Italy 13137 T 2964 2964
112 Italy 13138 C 2964 2964
113 Italy 13139 A 2964 2964
114 Italy 13140 C T 2964 2962 Thr4292Ile
115 Italy 13141 T 2964 2964
116 Italy 13142 A 2964 2964
117 Italy 13143 A 2964 2964
118 Italy 13144 T 2964 2964
119 Italy 13145 T 2964 2964
120 Italy 13146 G 2964 2964
121 Italy 13147 T 2964 2964
122 Italy 13148 G 2964 2964
123 Italy 13149 T 2964 2964
124 Italy 13150 T 2964 2964
125 Italy 13151 A 2964 2964
126 Italy 13152 A 2964 2964
127 Italy 13153 G 2964 2964
128 Italy 13154 A 2964 2964
129 Italy 13155 T 2964 2964
130 Italy 13156 G 2964 2964
131 Italy 13157 T 2964 2964
132 Italy 13158 T 2964 2964
133 Italy 13159 G 2964 2964
134 Italy 13160 T 2964 2964
135 Italy 13161 G 2964 2964
136 Italy 13162 T 2964 2964
137 Italy 13163 A 2964 2964
138 Italy 13164 C 2964 2964
139 Italy 13165 A 2964 2964
140 Italy 13166 C 2964 2964
141 Italy 13167 A 2964 2964
142 Italy 13168 C 2964 2964
143 Italy 13169 A 2964 2964
144 Italy 13170 C T 2964 2962 Thr4302Ile
145 Italy 13171 T 2964 2964
146 Italy 13172 G 2964 2964
147 Italy 13173 G 2964 2964
148 Italy 13174 T 2964 2964
149 Italy 13175 A G 2964 2963 Thr4304Ala
150 Italy 13176 C 2964 2964
151 Italy 13177 T 2964 2964
152 Italy 13178 G 2964 2964
153 Italy 13179 G 2964 2964
154 Italy 13180 T 2964 2964
155 Italy 13181 C 2964 2964
156 Italy 13182 A 2964 2964
157 Italy 13183 G 2964 2964
158 Italy 13184 G 2964 2964
159 Italy 13185 C 2964 2964
160 Italy 13186 A 2964 2964
161 Italy 13187 A 2964 2964
162 Italy 13188 T 2964 2964
163 Italy 13189 A 2964 2964
164 Italy 13190 A 2964 2964
165 Italy 13191 C 2964 2964
166 Italy 13192 A G 2964 2963 Thr4309Thr
167 Italy 13193 G T 2964 2963 Val4310Phe
168 Italy 13194 T 2964 2964
169 Italy 13195 T 2964 2964
170 Italy 13196 A 2964 2964
171 Italy 13197 C 2964 2964
172 Italy 13198 A 2964 2964
173 Italy 13199 C A 2964 2962 Pro4312Thr
174 Italy 13200 C 2964 2964
175 Italy 13201 G T,A 2964 2962 Pro4312Pro-p.Pro4312Pro
176 Italy 13202 G 2964 2964
177 Italy 13203 A 2964 2964
178 Italy 13204 A T 2963 2961 Glu4313Asp
179 Italy 13205 G 2963 2963
180 Italy 13206 C 2963 2963
181 Italy 13207 C 2963 2963
182 Italy 13208 A 2963 2963
183 Italy 13209 A G 2963 2962 Asn4315Ser
184 Italy 13210 T 2963 2963
185 Italy 13211 A 2963 2963
186 Italy 13212 T 2963 2963
187 Italy 13213 G 2963 2963
188 Italy 13214 G 2963 2963
189 Italy 13215 A 2963 2963
190 Italy 13216 T C 2963 2962 Asp4317Asp
191 Italy 13217 C 2963 2963
192 Italy 13218 A 2963 2963
193 Italy 13219 A 2963 2963
194 Italy 13220 G 2963 2963
195 Italy 13221 A 2963 2963
196 Italy 13222 A 2963 2963
197 Italy 13223 T 2963 2963
198 Italy 13224 C 2963 2963
199 Italy 13225 C T 2963 2962 Ser4320Ser
200 Italy 13226 T 2963 2963
201 Italy 13227 T 2963 2963
202 Italy 13228 T 2963 2962
203 Italy 13229 G 2963 2963
204 Italy 13230 G 2963 2963
205 Italy 13231 T 2963 2963
206 Italy 13232 G 2963 2963
207 Italy 13233 G 2963 2963
208 Italy 13234 T 2963 2962
209 Italy 13235 G 2963 2962
210 Italy 13236 C 2963 2962
211 Italy 13237 A 2963 2961
212 Italy 13238 T 2963 2961
213 Italy 13239 C 2963 2961
214 Italy 13240 G 2963 2961
215 Italy 13241 T 2963 2961
216 Italy 13242 G 2963 2961
217 Italy 13243 T 2963 2961
218 Italy 13244 T 2963 2961
219 Italy 13245 G 2963 2961
220 Italy 13246 T 2963 2961
221 Italy 13247 C 2963 2961
222 Italy 13248 T 2963 2961
223 Italy 13249 G T 2963 2857 Leu4328Leu
224 Italy 13250 T 2963 2961
225 Italy 13251 A 2963 2961
226 Italy 13252 C 2963 2961
227 Italy 13253 T 2963 2961
228 Italy 13254 G 2963 2961
229 Italy 13255 C T 2963 2959 Cys4330Cys
230 Italy 13256 C 2963 2961
231 Italy 13257 G 2963 2961
232 Italy 13258 T 2963 2961
233 Italy 13259 T 2963 2961
234 Italy 13260 G 2963 2961
235 Italy 13261 C 2963 2961
236 Italy 13262 C 2963 2961
237 Italy 13263 A 2963 2961
238 Italy 13264 C T 2963 2960 His4333His
239 Italy 13265 A 2963 2961
240 Italy 13266 T A 2963 2960 Ile4334Lys
241 Italy 13267 A 2963 2961
242 Italy 13268 G 2963 2961
243 Italy 13269 A 2963 2961
244 Italy 13270 T 2963 2961
245 Italy 13271 C 2963 2961
246 Italy 13272 A 2963 2961
247 Italy 13273 T C 2963 2953 His4336His
248 Italy 13274 C T 2963 2959 Pro4337Ser
249 Italy 13275 C T 2963 2960 Pro4337Leu
250 Italy 13276 A 2963 2961
251 Italy 13277 A 2963 2961
252 Italy 13278 A 2963 2961
253 Italy 13279 T 2963 2961
254 Italy 13280 C 2963 2961
255 Italy 13281 C 2963 2961
256 Italy 13282 T 2963 2961
257 Italy 13283 A 2963 2962
258 Italy 13284 A 2963 2962
259 Italy 13285 A 2963 2962
260 Italy 13286 G 2963 2963
261 Italy 13287 G 2963 2963
262 Italy 13288 A 2963 2963
263 Italy 13289 T 2963 2963
264 Italy 13290 T 2963 2963
265 Italy 13291 T 2963 2963
266 Italy 13292 T 2963 2963
267 Italy 13293 G 2963 2963
268 Italy 13294 T 2963 2963
269 Italy 13295 G 2963 2963
270 Italy 13296 A 2963 2963
271 Italy 13297 C T 2963 2959 Asp4344Asp
272 Italy 13298 T 2963 2963
273 Italy 13299 T 2963 2963
274 Italy 13300 A 2963 2963
275 Italy 13301 A 2963 2963
276 Italy 13302 A G 2963 2962 Lys4346Arg
277 Italy 13303 A 2963 2963
278 Italy 13304 G 2963 2963
279 Italy 13305 G 2963 2963
280 Italy 13306 T 2963 2963
281 Italy 13307 A 2963 2963
282 Italy 13308 A 2963 2963
283 Italy 13309 G 2963 2963
284 Italy 13310 T 2963 2963
285 Italy 13311 A 2963 2963
286 Italy 13312 T 2963 2963
287 Italy 13313 G 2963 2963
288 Italy 13314 T 2963 2963
289 Italy 13315 A 2963 2963
290 Italy 13316 C T 2963 2962 Gln4351*
291 Italy 13317 A 2963 2963
292 Italy 13318 A 2963 2963
293 Italy 13319 A 2963 2963
294 Italy 13320 T 2963 2963
295 Italy 13321 A 2963 2963
296 Italy 13322 C 2963 2963
297 Italy 13323 C 2963 2963
298 Italy 13324 T 2963 2963
299 Italy 13325 A 2963 2963
300 Italy 13326 C T 2963 2962 Thr4354Ile
301 Italy 13327 A 2963 2963
302 Italy 13328 A 2963 2963
303 Italy 13329 C T 2963 2962 Thr4355Ile
304 Italy 13330 T 2963 2963
305 Italy 13331 T 2963 2963
306 Italy 13332 G 2963 2963
307 Italy 13333 T 2963 2963
308 Italy 13334 G 2963 2963
309 Italy 13335 C T 2963 2962 Ala4357Val
310 Italy 13336 T 2963 2963
311 Italy 13337 A 2963 2958
312 Italy 13338 A 2963 2958
313 Italy 13339 T 2963 2958
314 Italy 13340 G 2963 2958
315 Italy 13341 A 2963 2958
316 Italy 13342 C 2963 2958
317 Italy 13343 C 2962 2957
318 Italy 13344 C 2962 2957
319 Italy 13345 T 2962 2957
320 Italy 13346 G 2962 2959
321 Italy 13347 T 2962 2959
322 Italy 13348 G T 2962 2957 Val4361Val
323 Italy 13349 G 2962 2962
324 Italy 13350 G 2962 2962
325 Italy 13351 T 2962 2962
326 Italy 13352 T 2962 2962
327 Italy 13353 T 2962 2962
328 Italy 13354 T 2962 2962
329 Italy 13355 A 2962 2962
330 Italy 13356 C 2962 2962
331 Italy 13357 A 2962 2962
332 Italy 13358 C T 2962 2961 Leu4365Phe
333 Italy 13359 T 2962 2962
334 Italy 13360 T 2962 2962
335 Italy 13361 A 2962 2962
336 Italy 13362 A 2962 2962
337 Italy 13363 A 2962 2962
338 Italy 13364 A 2962 2962
339 Italy 13365 A 2962 2962
340 Italy 13366 C 2962 2962
341 Italy 13367 A 2962 2962
342 Italy 13368 C 2962 2962
343 Italy 13369 A 2962 2962
344 Italy 13370 G 2962 2962
345 Italy 13371 T 2962 2962
346 Italy 13372 C T 2962 2961 Val4369Val
347 Italy 13373 T 2962 2962
348 Italy 13374 G 2962 2962
349 Italy 13375 T 2962 2962
350 Italy 13376 A 2962 2962
351 Italy 13377 C 2962 2962
352 Italy 13378 C 2962 2962
353 Italy 13379 G 2962 2962
354 Italy 13380 T 2962 2962
355 Italy 13381 C 2962 2961
356 Italy 13382 T 2962 2961
357 Italy 13383 G 2960 2959
358 Italy 13384 C 2960 2959
359 Italy 13385 G C 2960 2958 Gly4374Arg
360 Italy 13386 G 2960 2959
361 Italy 13387 T 2959 2958
362 Italy 13388 A 2959 2958
363 Italy 13389 T 2959 2958
364 Italy 13390 G 2959 2958
365 Italy 13391 T 2959 2958
366 Italy 13392 G 2959 2958
367 Italy 13393 G 2959 2958
368 Italy 13394 A 2959 2958
369 Italy 13395 A 2959 2958
370 Italy 13396 A 2959 2958
371 Italy 13397 G T 2959 2958 Gly4378Cys
372 Italy 13398 G 2959 2959
373 Italy 13399 T 2959 2959
374 Italy 13400 T 2959 2959
375 Italy 13401 A 2959 2959
376 Italy 13402 T 2959 2959
377 Italy 13403 G 2959 2959
378 Italy 13404 G 2959 2959
379 Italy 13405 C 2959 2959
380 Italy 13406 T 2959 2959
381 Italy 13407 G 2959 2959
382 Italy 13408 T 2959 2959
383 Italy 13409 A 2959 2959
384 Italy 13410 G 2959 2959
385 Italy 13411 T 2959 2959
386 Italy 13412 T 2959 2959
387 Italy 13413 G 2959 2959
388 Italy 13414 T 2959 2959
389 Italy 13415 G 2959 2959
390 Italy 13416 A 2959 2959
391 Italy 13417 T 2959 2959
392 Italy 13418 C 2959 2959
393 Italy 13419 A 2959 2959
394 Italy 13420 A 2959 2959
395 Italy 13421 C 2959 2959
396 Italy 13422 T 2959 2958
397 Italy 13423 C 2959 2958
398 Italy 13424 C T 2959 2957 Arg4387Cys
399 Italy 13425 G 2959 2958
400 Italy 13426 C T 2959 2958 Arg4387Arg
401 Italy 13427 G 2959 2959
402 Italy 13428 A 2959 2959
403 Italy 13429 A 2959 2959
404 Italy 13430 C 2959 2959
405 Italy 13431 C T 2959 2958 Pro4389Leu
406 Italy 13432 C 2959 2959
407 Italy 13433 A 2959 2959
408 Italy 13434 T 2959 2959
409 Italy 13435 G 2959 2959
410 Italy 13436 C 2959 2959
411 Italy 13437 T 2959 2959
412 Italy 13438 T C 2959 2958 Leu4391Leu
413 Italy 13439 C 2959 2959
414 Italy 13440 A 2959 2959
415 Italy 13441 G 2959 2959