National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 1                                      
C   39   1                                    
D   21                                        
E   12                                        
F   15                                        
G   39           1                            
H   9                                        
I   12               1                        
K   24                                        
L   24         1         1                    
M   12               1                        
N   21                                        
P   24                         1     1 1      
Q   18                                        
R   6                             1          
S   18                                        
T   39               3                 1      
V   27               2                   1    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Ireland 13026 C 1972 1972
1 Ireland 13027 T 1972 1972
2 Ireland 13028 G 1972 1972
3 Ireland 13029 G 1972 1972
4 Ireland 13030 T 1972 1972
5 Ireland 13031 A 1972 1972
6 Ireland 13032 A 1972 1972
7 Ireland 13033 T 1972 1972
8 Ireland 13034 G 1972 1972
9 Ireland 13035 C 1972 1972
10 Ireland 13036 A 1972 1972
11 Ireland 13037 A 1972 1972
12 Ireland 13038 C 1972 1972
13 Ireland 13039 A 1972 1972
14 Ireland 13040 G 1972 1972
15 Ireland 13041 A 1972 1972
16 Ireland 13042 A 1972 1972
17 Ireland 13043 G 1972 1972
18 Ireland 13044 T 1972 1972
19 Ireland 13045 G 1972 1972
20 Ireland 13046 C 1972 1972
21 Ireland 13047 C 1972 1972
22 Ireland 13048 T 1972 1972
23 Ireland 13049 G 1972 1972
24 Ireland 13050 C 1972 1972
25 Ireland 13051 C 1972 1972
26 Ireland 13052 A 1972 1972
27 Ireland 13053 A 1972 1972
28 Ireland 13054 T 1972 1972
29 Ireland 13055 T 1972 1972
30 Ireland 13056 C 1972 1972
31 Ireland 13057 A 1972 1972
32 Ireland 13058 A 1972 1972
33 Ireland 13059 C T 1972 1971 Thr4265Ile
34 Ireland 13060 T 1972 1972
35 Ireland 13061 G 1972 1972
36 Ireland 13062 T 1972 1972
37 Ireland 13063 A 1972 1972
38 Ireland 13064 T 1972 1972
39 Ireland 13065 T 1972 1972
40 Ireland 13066 A 1972 1972
41 Ireland 13067 T 1972 1972
42 Ireland 13068 C 1972 1972
43 Ireland 13069 T 1972 1972
44 Ireland 13070 T 1972 1972
45 Ireland 13071 T 1972 1972
46 Ireland 13072 C 1972 1972
47 Ireland 13073 T 1972 1972
48 Ireland 13074 G 1972 1972
49 Ireland 13075 T 1972 1972
50 Ireland 13076 G 1972 1972
51 Ireland 13077 C 1972 1972
52 Ireland 13078 T 1972 1972
53 Ireland 13079 T 1972 1972
54 Ireland 13080 T 1972 1972
55 Ireland 13081 T 1972 1972
56 Ireland 13082 G 1972 1972
57 Ireland 13083 C 1972 1972
58 Ireland 13084 T 1972 1972
59 Ireland 13085 G 1972 1972
60 Ireland 13086 T 1972 1972
61 Ireland 13087 A 1972 1972
62 Ireland 13088 G 1972 1972
63 Ireland 13089 A 1972 1972
64 Ireland 13090 T 1972 1972
65 Ireland 13091 G 1972 1972
66 Ireland 13092 C 1972 1972
67 Ireland 13093 T 1972 1972
68 Ireland 13094 G 1972 1972
69 Ireland 13095 C 1972 1972
70 Ireland 13096 T 1972 1972
71 Ireland 13097 A 1972 1972
72 Ireland 13098 A 1972 1972
73 Ireland 13099 A 1972 1972
74 Ireland 13100 G 1972 1972
75 Ireland 13101 C 1972 1972
76 Ireland 13102 T 1972 1972
77 Ireland 13103 T 1972 1972
78 Ireland 13104 A 1972 1972
79 Ireland 13105 C 1972 1972
80 Ireland 13106 A 1972 1972
81 Ireland 13107 A 1972 1972
82 Ireland 13108 A 1972 1972
83 Ireland 13109 G 1972 1972
84 Ireland 13110 A 1972 1972
85 Ireland 13111 T 1972 1972
86 Ireland 13112 T 1972 1972
87 Ireland 13113 A 1972 1972
88 Ireland 13114 T 1972 1972
89 Ireland 13115 C T 1972 1961 Leu4284Leu
90 Ireland 13116 T 1972 1972
91 Ireland 13117 A 1972 1972
92 Ireland 13118 G 1972 1972
93 Ireland 13119 C 1972 1972
94 Ireland 13120 T 1972 1972
95 Ireland 13121 A 1972 1972
96 Ireland 13122 G 1972 1972
97 Ireland 13123 T 1972 1972
98 Ireland 13124 G 1972 1972
99 Ireland 13125 G 1972 1972
100 Ireland 13126 G 1972 1972
101 Ireland 13127 G 1972 1972
102 Ireland 13128 G 1972 1972
103 Ireland 13129 A 1972 1972
104 Ireland 13130 C 1972 1972
105 Ireland 13131 A 1972 1972
106 Ireland 13132 A 1972 1972
107 Ireland 13133 C 1972 1972
108 Ireland 13134 C 1972 1972
109 Ireland 13135 A 1972 1972
110 Ireland 13136 A 1972 1972
111 Ireland 13137 T 1972 1972
112 Ireland 13138 C T 1972 1968 Ile4291Ile
113 Ireland 13139 A 1972 1972
114 Ireland 13140 C 1972 1972
115 Ireland 13141 T 1972 1972
116 Ireland 13142 A 1972 1972
117 Ireland 13143 A 1972 1972
118 Ireland 13144 T 1972 1972
119 Ireland 13145 T 1972 1972
120 Ireland 13146 G 1972 1972
121 Ireland 13147 T 1972 1972
122 Ireland 13148 G 1972 1972
123 Ireland 13149 T 1972 1972
124 Ireland 13150 T 1972 1972
125 Ireland 13151 A 1972 1972
126 Ireland 13152 A 1972 1972
127 Ireland 13153 G 1972 1972
128 Ireland 13154 A 1972 1972
129 Ireland 13155 T 1972 1972
130 Ireland 13156 G 1972 1972
131 Ireland 13157 T 1972 1972
132 Ireland 13158 T 1972 1972
133 Ireland 13159 G 1972 1972
134 Ireland 13160 T 1972 1972
135 Ireland 13161 G 1972 1972
136 Ireland 13162 T 1972 1972
137 Ireland 13163 A 1972 1972
138 Ireland 13164 C 1972 1972
139 Ireland 13165 A 1972 1972
140 Ireland 13166 C 1972 1972
141 Ireland 13167 A 1972 1972
142 Ireland 13168 C 1972 1972
143 Ireland 13169 A 1972 1972
144 Ireland 13170 C 1972 1972
145 Ireland 13171 T 1972 1972
146 Ireland 13172 G 1972 1972
147 Ireland 13173 G 1972 1972
148 Ireland 13174 T 1972 1972
149 Ireland 13175 A 1972 1972
150 Ireland 13176 C T 1972 1961 Thr4304Ile
151 Ireland 13177 T 1972 1972
152 Ireland 13178 G 1972 1972
153 Ireland 13179 G 1972 1972
154 Ireland 13180 T 1972 1972
155 Ireland 13181 C 1972 1972
156 Ireland 13182 A 1972 1972
157 Ireland 13183 G 1972 1972
158 Ireland 13184 G 1972 1972
159 Ireland 13185 C 1972 1972
160 Ireland 13186 A 1972 1972
161 Ireland 13187 A 1972 1972
162 Ireland 13188 T 1972 1972
163 Ireland 13189 A 1972 1972
164 Ireland 13190 A 1972 1972
165 Ireland 13191 C 1972 1972
166 Ireland 13192 A 1972 1972
167 Ireland 13193 G 1972 1972
168 Ireland 13194 T 1972 1972
169 Ireland 13195 T 1972 1972
170 Ireland 13196 A 1972 1972
171 Ireland 13197 C 1972 1972
172 Ireland 13198 A 1972 1972
173 Ireland 13199 C A 1972 1971 Pro4312Thr
174 Ireland 13200 C 1972 1972
175 Ireland 13201 G A 1972 1966 Pro4312Pro
176 Ireland 13202 G 1972 1972
177 Ireland 13203 A 1972 1972
178 Ireland 13204 A 1972 1972
179 Ireland 13205 G 1972 1972
180 Ireland 13206 C 1972 1972
181 Ireland 13207 C 1972 1972
182 Ireland 13208 A 1972 1972
183 Ireland 13209 A 1972 1972
184 Ireland 13210 T 1972 1972
185 Ireland 13211 A 1972 1972
186 Ireland 13212 T 1972 1972
187 Ireland 13213 G A 1972 1970 Met4316Ile
188 Ireland 13214 G 1972 1972
189 Ireland 13215 A 1972 1972
190 Ireland 13216 T 1972 1972
191 Ireland 13217 C 1972 1972
192 Ireland 13218 A 1972 1972
193 Ireland 13219 A 1972 1972
194 Ireland 13220 G 1972 1972
195 Ireland 13221 A 1972 1972
196 Ireland 13222 A 1972 1972
197 Ireland 13223 T 1972 1972
198 Ireland 13224 C 1972 1972
199 Ireland 13225 C 1972 1972
200 Ireland 13226 T 1972 1972
201 Ireland 13227 T 1972 1972
202 Ireland 13228 T 1972 1972
203 Ireland 13229 G 1972 1972
204 Ireland 13230 G 1972 1972
205 Ireland 13231 T 1972 1972
206 Ireland 13232 G 1972 1972
207 Ireland 13233 G 1972 1972
208 Ireland 13234 T 1972 1972
209 Ireland 13235 G 1972 1972
210 Ireland 13236 C 1972 1972
211 Ireland 13237 A G 1972 1971 Ala4324Ala
212 Ireland 13238 T 1972 1972
213 Ireland 13239 C 1972 1972
214 Ireland 13240 G 1972 1972
215 Ireland 13241 T 1972 1972
216 Ireland 13242 G 1972 1972
217 Ireland 13243 T 1972 1972
218 Ireland 13244 T 1972 1972
219 Ireland 13245 G 1972 1972
220 Ireland 13246 T 1972 1972
221 Ireland 13247 C 1972 1972
222 Ireland 13248 T 1972 1972
223 Ireland 13249 G 1972 1972
224 Ireland 13250 T 1972 1972
225 Ireland 13251 A 1972 1972
226 Ireland 13252 C 1972 1972
227 Ireland 13253 T 1972 1972
228 Ireland 13254 G 1972 1972
229 Ireland 13255 C 1972 1972
230 Ireland 13256 C 1972 1972
231 Ireland 13257 G 1972 1972
232 Ireland 13258 T 1972 1972
233 Ireland 13259 T 1972 1972
234 Ireland 13260 G 1972 1972
235 Ireland 13261 C T 1972 1971 Cys4332Cys
236 Ireland 13262 C 1972 1972
237 Ireland 13263 A 1972 1972
238 Ireland 13264 C 1972 1972
239 Ireland 13265 A 1972 1972
240 Ireland 13266 T 1972 1972
241 Ireland 13267 A 1972 1972
242 Ireland 13268 G 1972 1972
243 Ireland 13269 A 1972 1972
244 Ireland 13270 T 1972 1972
245 Ireland 13271 C 1972 1972
246 Ireland 13272 A 1972 1972
247 Ireland 13273 T 1972 1972
248 Ireland 13274 C T 1972 1971 Pro4337Ser
249 Ireland 13275 C 1972 1972
250 Ireland 13276 A 1972 1972
251 Ireland 13277 A 1972 1972
252 Ireland 13278 A 1972 1972
253 Ireland 13279 T 1972 1972
254 Ireland 13280 C 1972 1972
255 Ireland 13281 C 1972 1972
256 Ireland 13282 T 1972 1972
257 Ireland 13283 A 1972 1972
258 Ireland 13284 A 1972 1972
259 Ireland 13285 A 1972 1972
260 Ireland 13286 G 1972 1972
261 Ireland 13287 G 1972 1972
262 Ireland 13288 A 1972 1972
263 Ireland 13289 T 1972 1972
264 Ireland 13290 T 1972 1972
265 Ireland 13291 T 1972 1972
266 Ireland 13292 T 1972 1972
267 Ireland 13293 G 1972 1972
268 Ireland 13294 T 1972 1972
269 Ireland 13295 G 1972 1972
270 Ireland 13296 A 1972 1972
271 Ireland 13297 C 1972 1972
272 Ireland 13298 T 1972 1972
273 Ireland 13299 T 1972 1972
274 Ireland 13300 A 1972 1972
275 Ireland 13301 A 1972 1972
276 Ireland 13302 A 1972 1972
277 Ireland 13303 A 1972 1972
278 Ireland 13304 G 1972 1972
279 Ireland 13305 G 1972 1972
280 Ireland 13306 T 1972 1972
281 Ireland 13307 A 1972 1972
282 Ireland 13308 A 1972 1972
283 Ireland 13309 G 1972 1972
284 Ireland 13310 T 1972 1972
285 Ireland 13311 A 1972 1972
286 Ireland 13312 T 1972 1972
287 Ireland 13313 G A 1972 1971 Val4350Ile
288 Ireland 13314 T 1972 1972
289 Ireland 13315 A 1972 1972
290 Ireland 13316 C 1972 1972
291 Ireland 13317 A 1972 1972
292 Ireland 13318 A 1972 1972
293 Ireland 13319 A 1972 1972
294 Ireland 13320 T 1972 1972
295 Ireland 13321 A 1972 1972
296 Ireland 13322 C 1972 1972
297 Ireland 13323 C 1972 1972
298 Ireland 13324 T 1972 1972
299 Ireland 13325 A 1972 1972
300 Ireland 13326 C 1972 1972
301 Ireland 13327 A G 1972 1971 Thr4354Thr
302 Ireland 13328 A 1972 1972
303 Ireland 13329 C 1972 1972
304 Ireland 13330 T 1972 1972
305 Ireland 13331 T 1972 1972
306 Ireland 13332 G 1972 1972
307 Ireland 13333 T 1972 1972
308 Ireland 13334 G 1972 1972
309 Ireland 13335 C 1972 1972
310 Ireland 13336 T 1972 1972
311 Ireland 13337 A 1972 1972
312 Ireland 13338 A 1972 1972
313 Ireland 13339 T 1972 1972
314 Ireland 13340 G 1972 1972
315 Ireland 13341 A 1972 1972
316 Ireland 13342 C 1972 1972
317 Ireland 13343 C 1972 1972
318 Ireland 13344 C 1972 1972
319 Ireland 13345 T 1972 1972
320 Ireland 13346 G 1972 1972
321 Ireland 13347 T 1972 1972
322 Ireland 13348 G 1972 1972
323 Ireland 13349 G 1972 1972
324 Ireland 13350 G 1972 1972
325 Ireland 13351 T 1972 1972
326 Ireland 13352 T 1972 1972
327 Ireland 13353 T 1972 1972
328 Ireland 13354 T 1972 1972
329 Ireland 13355 A 1972 1972
330 Ireland 13356 C T 1972 1971 Thr4364Ile
331 Ireland 13357 A 1972 1972
332 Ireland 13358 C T 1972 1971 Leu4365Phe
333 Ireland 13359 T 1972 1972
334 Ireland 13360 T 1972 1972
335 Ireland 13361 A 1972 1972
336 Ireland 13362 A 1972 1972
337 Ireland 13363 A 1972 1972
338 Ireland 13364 A 1910 1909
339 Ireland 13365 A 1910 1909
340 Ireland 13366 C 1910 1909
341 Ireland 13367 A 1910 1910
342 Ireland 13368 C 1910 1910
343 Ireland 13369 A 1910 1910
344 Ireland 13370 G 1910 1910
345 Ireland 13371 T 1910 1910
346 Ireland 13372 C T 1910 1898 Val4369Val
347 Ireland 13373 T 1910 1910
348 Ireland 13374 G 1910 1910
349 Ireland 13375 T 1910 1910
350 Ireland 13376 A 1910 1910
351 Ireland 13377 C 1910 1910
352 Ireland 13378 C 1910 1910
353 Ireland 13379 G A 1909 1906 Val4372Ile
354 Ireland 13380 T 1909 1908
355 Ireland 13381 C 1909 1908
356 Ireland 13382 T 1909 1908
357 Ireland 13383 G 1909 1908
358 Ireland 13384 C 1909 1908
359 Ireland 13385 G 1909 1908
360 Ireland 13386 G 1909 1908
361 Ireland 13387 T 1909 1908
362 Ireland 13388 A 1909 1908
363 Ireland 13389 T 1909 1909
364 Ireland 13390 G 1909 1909
365 Ireland 13391 T 1909 1909
366 Ireland 13392 G 1909 1909
367 Ireland 13393 G 1909 1909
368 Ireland 13394 A 1909 1909
369 Ireland 13395 A 1909 1909
370 Ireland 13396 A 1909 1909
371 Ireland 13397 G 1909 1909
372 Ireland 13398 G 1909 1909
373 Ireland 13399 T 1909 1909
374 Ireland 13400 T 1909 1909
375 Ireland 13401 A 1909 1909
376 Ireland 13402 T 1909 1909
377 Ireland 13403 G 1909 1909
378 Ireland 13404 G 1909 1909
379 Ireland 13405 C T 1909 1908 Gly4380Gly
380 Ireland 13406 T 1909 1909
381 Ireland 13407 G 1909 1909
382 Ireland 13408 T 1909 1909
383 Ireland 13409 A 1909 1909
384 Ireland 13410 G 1909 1909
385 Ireland 13411 T 1909 1909
386 Ireland 13412 T 1909 1909
387 Ireland 13413 G 1909 1909
388 Ireland 13414 T 1909 1909
389 Ireland 13415 G 1909 1909
390 Ireland 13416 A 1909 1909
391 Ireland 13417 T 1909 1909
392 Ireland 13418 C 1909 1909
393 Ireland 13419 A 1909 1909
394 Ireland 13420 A 1909 1909
395 Ireland 13421 C 1909 1909
396 Ireland 13422 T 1909 1909
397 Ireland 13423 C 1909 1909
398 Ireland 13424 C 1909 1908
399 Ireland 13425 G 1909 1909
400 Ireland 13426 C T 1909 1907 Arg4387Arg
401 Ireland 13427 G 1909 1909
402 Ireland 13428 A 1909 1909
403 Ireland 13429 A 1909 1909
404 Ireland 13430 C 1909 1909
405 Ireland 13431 C 1909 1909
406 Ireland 13432 C 1909 1909
407 Ireland 13433 A 1909 1909
408 Ireland 13434 T 1909 1909
409 Ireland 13435 G 1909 1909
410 Ireland 13436 C 1909 1909
411 Ireland 13437 T 1909 1909
412 Ireland 13438 T 1909 1909
413 Ireland 13439 C 1909 1909
414 Ireland 13440 A 1909 1909
415 Ireland 13441 G 1909 1909