National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*                                              
-     416                                        
?                                              
A     38 3     1                       3 2 7    
C     39   2       2                 1       1  
D     21     5 3                                
E     12       1                                
F     15   1                                    
G     39           4                            
H     9             2                          
I     12                     1                  
K     24                             1          
L     24         1         3 1     1            
M     12                                   1    
N     21                                        
P     24             1     1     1 1   2 1      
Q     18             1                          
R     6   1                         1          
S     18                                 1     1
T     39 2             2       2         3      
V     27         1 1   1                   2    
W     3                                        
Y 1   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 India 13026 C 4752 4752
1 India 13027 T 4752 4752
2 India 13028 G 4754 4753
3 India 13029 G 4754 4754
4 India 13030 T 4754 4754
5 India 13031 A 4754 4754
6 India 13032 A 4754 4754
7 India 13033 T 4755 4755
8 India 13034 G A 4756 4755 Ala4257Thr
9 India 13035 C A,T 4756 4753 Ala4257Glu-p.Ala4257Val
10 India 13036 A 4756 4756
11 India 13037 A G 4756 4755 Thr4258Ala
12 India 13038 C 4756 4755
13 India 13039 A 4756 4756
14 India 13040 G 4756 4755
15 India 13041 A 4757 4757
16 India 13042 A 4757 4757
17 India 13043 G 4757 4757
18 India 13044 T 4757 4757
19 India 13045 G 4757 4757
20 India 13046 C 4757 4757
21 India 13047 C A 4757 4756 Pro4261His
22 India 13048 T 4757 4757
23 India 13049 G 4757 4757
24 India 13050 C T 4757 4756 Ala4262Val
25 India 13051 C 4757 4756
26 India 13052 A 4757 4757
27 India 13053 A 4757 4757
28 India 13054 T 4757 4757
29 India 13055 T 4757 4757
30 India 13056 C 4757 4757
31 India 13057 A 4757 4757
32 India 13058 A 4757 4757
33 India 13059 C T,A 4757 4753 Thr4265Ile-p.Thr4265Asn
34 India 13060 T 4757 4757
35 India 13061 G A 4757 4756 Val4266Ile
36 India 13062 T 4757 4757
37 India 13063 A 4757 4757
38 India 13064 T 4757 4756
39 India 13065 T 4757 4756
40 India 13066 A 4757 4756
41 India 13067 T 4757 4756
42 India 13068 C 4757 4756
43 India 13069 T 4757 4756
44 India 13070 T 4757 4756
45 India 13071 T G 4757 4755 Phe4269Cys
46 India 13072 C 4757 4756
47 India 13073 T 4757 4756
48 India 13074 G 4757 4756
49 India 13075 T 4756 4755
50 India 13076 G 4756 4755
51 India 13077 C T 4756 4753 Ala4271Val
52 India 13078 T 4756 4755
53 India 13079 T 4756 4756
54 India 13080 T 4756 4756
55 India 13081 T 4756 4756
56 India 13082 G 4756 4756
57 India 13083 C T 4756 4754 Ala4273Val
58 India 13084 T 4756 4755
59 India 13085 G 4756 4755
60 India 13086 T 4756 4755
61 India 13087 A 4756 4726
62 India 13088 G 4756 4755
63 India 13089 A 4756 4755
64 India 13090 T G,C 4756 4753 Asp4275Glu-p.Asp4275Asp
65 India 13091 G 4756 4756
66 India 13092 C 4755 4755
67 India 13093 T 4755 4755
68 India 13094 G A 4755 4753 Ala4277Thr
69 India 13095 C T 4755 4754 Ala4277Val
70 India 13096 T C 4754 4753 Ala4277Ala
71 India 13097 A 4754 4754
72 India 13098 A 4754 4752
73 India 13099 A 4754 4752
74 India 13100 G 4754 4753
75 India 13101 C 4754 4754
76 India 13102 T 4754 4753
77 India 13103 T 4754 4753
78 India 13104 A 4754 4752
79 India 13105 C 4754 4752
80 India 13106 A 4754 4754
81 India 13107 A 4754 4754
82 India 13108 A 4754 4754
83 India 13109 G 4754 4754
84 India 13110 A 4754 4754
85 India 13111 T G,C 4754 4752 Asp4282Glu-p.Asp4282Asp
86 India 13112 T 4754 4751
87 India 13113 A 4754 4752
88 India 13114 T 4754 4752
89 India 13115 C T 4754 4750 Leu4284Leu
90 India 13116 T 4754 4753
91 India 13117 A 4754 4753
92 India 13118 G T 4754 4745 Ala4285Ser
93 India 13119 C T 4754 4752 Ala4285Val
94 India 13120 T A 4754 4752 Ala4285Ala
95 India 13121 A 4754 4753
96 India 13122 G 4754 4753
97 India 13123 T 4754 4753
98 India 13124 G 4754 4751
99 India 13125 G 4754 4753
100 India 13126 G T 4754 4751 Gly4287Gly
101 India 13127 G 4754 4753
102 India 13128 G 4754 4753
103 India 13129 A 4754 4753
104 India 13130 C 4754 4753
105 India 13131 A 4754 4753
106 India 13132 A 4754 4752
107 India 13133 C A 4754 4752 Pro4290Thr
108 India 13134 C 4754 4753
109 India 13135 A 4754 4752
110 India 13136 A 4754 4752
111 India 13137 T 4754 4752
112 India 13138 C 4754 4753
113 India 13139 A 4754 4753
114 India 13140 C 4754 4753
115 India 13141 T 4754 4753
116 India 13142 A 4754 4752
117 India 13143 A 4754 4752
118 India 13144 T 4754 4753
119 India 13145 T 4754 4752
120 India 13146 G 4754 4753
121 India 13147 T 4754 4753
122 India 13148 G 4754 4753
123 India 13149 T 4754 4752
124 India 13150 T C 4754 4752 Val4295Val
125 India 13151 A 4754 4752
126 India 13152 A 4754 4752
127 India 13153 G 4754 4753
128 India 13154 A 4754 4753
129 India 13155 T 4754 4753
130 India 13156 G 4754 4753
131 India 13157 T 4754 4753
132 India 13158 T 4754 4753
133 India 13159 G 4754 4753
134 India 13160 T 4754 4754
135 India 13161 G 4754 4754
136 India 13162 T 4754 4754
137 India 13163 A 4754 4753
138 India 13164 C T 4754 4752 Thr4300Ile
139 India 13165 A C 4754 4753 Thr4300Thr
140 India 13166 C 4759 4759
141 India 13167 A 4759 4759
142 India 13168 C 4759 4758
143 India 13169 A 4759 4759
144 India 13170 C 4759 4759
145 India 13171 T A 4759 4757 Thr4302Thr
146 India 13172 G 4759 4759
147 India 13173 G 4759 4758
148 India 13174 T 4759 4759
149 India 13175 A 4759 4759
150 India 13176 C 4759 4759
151 India 13177 T 4759 4759
152 India 13178 G 4759 4759
153 India 13179 G 4759 4758
154 India 13180 T 4759 4759
155 India 13181 C 4759 4759
156 India 13182 A 4759 4759
157 India 13183 G T 4759 4757 Gln4306His
158 India 13184 G 4759 4759
159 India 13185 C 4759 4759
160 India 13186 A 4759 4759
161 India 13187 A 4759 4759
162 India 13188 T 4759 4759
163 India 13189 A G 4759 4756 Ile4308Met
164 India 13190 A 4759 4759
165 India 13191 C 4759 4758
166 India 13192 A 4759 4759
167 India 13193 G 4759 4759
168 India 13194 T 4759 4759
169 India 13195 T 4759 4759
170 India 13196 A 4759 4759
171 India 13197 C 4759 4759
172 India 13198 A 4759 4759
173 India 13199 C 4759 4759
174 India 13200 C A 4759 4757 Pro4312Gln
175 India 13201 G T 4759 4757 Pro4312Pro
176 India 13202 G 4759 4759
177 India 13203 A 4759 4759
178 India 13204 A G 4759 4758 Glu4313Glu
179 India 13205 G T 4759 4758 Ala4314Ser
180 India 13206 C 4759 4759
181 India 13207 C T 4759 4755 Ala4314Ala
182 India 13208 A 4759 4759
183 India 13209 A 4759 4758
184 India 13210 T 4759 4759
185 India 13211 A G 4759 4753 Met4316Val
186 India 13212 T 4759 4759
187 India 13213 G 4759 4758
188 India 13214 G 4759 4759
189 India 13215 A 4759 4759
190 India 13216 T C,A 4759 4757 Asp4317Glu-p.Asp4317Asp
191 India 13217 C 4759 4758
192 India 13218 A 4759 4759
193 India 13219 A 4759 4759
194 India 13220 G 4759 4757
195 India 13221 A 4759 4759
196 India 13222 A 4759 4759
197 India 13223 T 4759 4759
198 India 13224 C A 4759 4758 Ser4320Tyr
199 India 13225 C 4759 4758
200 India 13226 T 4759 4759
201 India 13227 T 4759 4759
202 India 13228 T 4759 4759
203 India 13229 G 4759 4759
204 India 13230 G 4759 4759
205 India 13231 T 4759 4759
206 India 13232 G 4759 4759
207 India 13233 G 4759 4759
208 India 13234 T 4759 4759
209 India 13235 G 4759 4759
210 India 13236 C 4759 4759
211 India 13237 A 4759 4759
212 India 13238 T A 4759 4758 Ser4325Thr
213 India 13239 C 4759 4759
214 India 13240 G 4759 4758
215 India 13241 T C 4759 4757 Cys4326Arg
216 India 13242 G 4759 4759
217 India 13243 T 4759 4759
218 India 13244 T G 4759 4758 Cys4327Gly
219 India 13245 G 4759 4759
220 India 13246 T 4759 4759
221 India 13247 C A 4759 4757 Leu4328Met
222 India 13248 T A 4759 4758 Leu4328Gln
223 India 13249 G 4759 4758
224 India 13250 T 4759 4757
225 India 13251 A 4759 4756
226 India 13252 C 4759 4755
227 India 13253 T 4759 4755
228 India 13254 G 4759 4755
229 India 13255 C T 4759 4745 Cys4330Cys
230 India 13256 C T 4759 4755 Arg4331Cys
231 India 13257 G 4759 4756
232 India 13258 T 4759 4754
233 India 13259 T G 4759 4754 Cys4332Gly
234 India 13260 G 4759 4755
235 India 13261 C T 4759 4754 Cys4332Cys
236 India 13262 C 4759 4756
237 India 13263 A 4759 4756
238 India 13264 C T 4759 4754 His4333His
239 India 13265 A 4759 4756
240 India 13266 T 4759 4756
241 India 13267 A 4759 4755
242 India 13268 G 4759 4754
243 India 13269 A 4759 4756
244 India 13270 T C 4759 4757 Asp4335Asp
245 India 13271 C 4759 4758
246 India 13272 A 4759 4759
247 India 13273 T C 4759 4758 His4336His
248 India 13274 C T 4759 4757 Pro4337Ser
249 India 13275 C T 4759 4758 Pro4337Leu
250 India 13276 A 4759 4758
251 India 13277 A 4758 4758
252 India 13278 A 4758 4758
253 India 13279 T 4758 4758
254 India 13280 C 4758 4757
255 India 13281 C 4758 4758
256 India 13282 T 4758 4758
257 India 13283 A 4758 4758
258 India 13284 A 4758 4758
259 India 13285 A 4758 4758
260 India 13286 G 4758 4758
261 India 13287 G 4758 4757
262 India 13288 A G 4758 4757 Gly4341Gly
263 India 13289 T 4758 4758
264 India 13290 T 4758 4758
265 India 13291 T 4758 4758
266 India 13292 T 4758 4758
267 India 13293 G 4758 4758
268 India 13294 T 4758 4758
269 India 13295 G 4758 4755
270 India 13296 A 4758 4758
271 India 13297 C T 4758 4756 Asp4344Asp
272 India 13298 T C 4758 4755 Leu4345Leu
273 India 13299 T 4758 4758
274 India 13300 A 4758 4758
275 India 13301 A 4758 4758
276 India 13302 A 4758 4758
277 India 13303 A 4757 4757
278 India 13304 G 4757 4756
279 India 13305 G 4757 4757
280 India 13306 T 4757 4757
281 India 13307 A 4757 4757
282 India 13308 A G 4762 4761 Lys4348Arg
283 India 13309 G 4762 4762
284 India 13310 T 4762 4762
285 India 13311 A 4762 4762
286 India 13312 T 4762 4762
287 India 13313 G 4762 4762
288 India 13314 T 4762 4762
289 India 13315 A 4762 4762
290 India 13316 C 4762 4762
291 India 13317 A 4762 4762
292 India 13318 A 4762 4762
293 India 13319 A 4762 4762
294 India 13320 T 4762 4761
295 India 13321 A 4762 4760
296 India 13322 C 4762 4760
297 India 13323 C 4762 4760
298 India 13324 T 4762 4755
299 India 13325 A 4762 4759
300 India 13326 C 4762 4759
301 India 13327 A 4762 4758
302 India 13328 A 4762 4758
303 India 13329 C A 4762 4757 Thr4355Asn
304 India 13330 T 4762 4758
305 India 13331 T 4762 4758
306 India 13332 G 4762 4758
307 India 13333 T 4762 4757
308 India 13334 G T 4762 4755 Ala4357Ser
309 India 13335 C T 4762 4755 Ala4357Val
310 India 13336 T 4762 4754
311 India 13337 A 4762 4754
312 India 13338 A 4761 4752
313 India 13339 T 4761 4752
314 India 13340 G 4761 4753
315 India 13341 A 4761 4753
316 India 13342 C 4761 4753
317 India 13343 C 4761 4753
318 India 13344 C 4761 4753
319 India 13345 T 4763 4756
320 India 13346 G 4763 4757
321 India 13347 T G 4763 4755 Val4361Gly
322 India 13348 G T 4763 4757 Val4361Val
323 India 13349 G 4763 4760
324 India 13350 G 4763 4760
325 India 13351 T 4763 4760
326 India 13352 T 4763 4760
327 India 13353 T 4763 4760
328 India 13354 T 4763 4760
329 India 13355 A 4763 4760
330 India 13356 C 4763 4751
331 India 13357 A 4763 4760
332 India 13358 C 4763 4760
333 India 13359 T 4763 4761
334 India 13360 T 4763 4762
335 India 13361 A 4762 4761
336 India 13362 A 4762 4761
337 India 13363 A 4762 4761
338 India 13364 A 4762 4761
339 India 13365 A 4762 4761
340 India 13366 C 4762 4761
341 India 13367 A 4762 4762
342 India 13368 C 4762 4762
343 India 13369 A 4762 4762
344 India 13370 G 4762 4762
345 India 13371 T 4762 4762
346 India 13372 C 4762 4759
347 India 13373 T 4762 4761
348 India 13374 G 4762 4761
349 India 13375 T 4762 4761
350 India 13376 A G 4762 4761 Thr4371Ala
351 India 13377 C 4762 4762
352 India 13378 C A 4762 4761 Thr4371Thr
353 India 13379 G T 4749 4748 Val4372Phe
354 India 13380 T 4744 4741
355 India 13381 C 4744 4743
356 India 13382 T 4744 4743
357 India 13383 G 4744 4743
358 India 13384 C 4744 4743
359 India 13385 G 4744 4743
360 India 13386 G 4741 4739
361 India 13387 T C 4740 4734 Gly4374Gly
362 India 13388 A 4739 4738
363 India 13389 T 4739 4738
364 India 13390 G 4738 4723
365 India 13391 T 4738 4736
366 India 13392 G 4738 4737
367 India 13393 G 4738 4737
368 India 13394 A 4738 4737
369 India 13395 A 4738 4737
370 India 13396 A 4738 4737
371 India 13397 G 4738 4736
372 India 13398 G 4738 4737
373 India 13399 T 4738 4737
374 India 13400 T 4738 4736
375 India 13401 A 4738 4736
376 India 13402 T G 4738 4725 Tyr4379*
377 India 13403 G 4738 4734
378 India 13404 G 4738 4736
379 India 13405 C T 4738 4733 Gly4380Gly
380 India 13406 T 4738 4737
381 India 13407 G 4737 4736
382 India 13408 T G 4737 4728 Cys4381Trp
383 India 13409 A 4737 4735
384 India 13410 G 4737 4736
385 India 13411 T 4737 4736
386 India 13412 T 4737 4736
387 India 13413 G 4737 4735
388 India 13414 T 4737 4736
389 India 13415 G 4737 4736
390 India 13416 A 4736 4734
391 India 13417 T 4736 4735
392 India 13418 C 4736 4736
393 India 13419 A 4736 4736
394 India 13420 A 4736 4736
395 India 13421 C T 4736 4735 Leu4386Phe
396 India 13422 T 4736 4735
397 India 13423 C T 4736 4733 Leu4386Leu
398 India 13424 C 4736 4736
399 India 13425 G 4736 4735
400 India 13426 C T 4736 4733 Arg4387Arg
401 India 13427 G 4736 4736
402 India 13428 A 4736 4736
403 India 13429 A 4736 4736
404 India 13430 C T 4736 4735 Pro4389Ser
405 India 13431 C 4736 4736
406 India 13432 C 4736 4736
407 India 13433 A 4736 4735
408 India 13434 T 4736 4736
409 India 13435 G 4736 4735
410 India 13436 C 4736 4734
411 India 13437 T 4736 4736
412 India 13438 T 4736 4735
413 India 13439 C 4736 4735
414 India 13440 A 4736 4736
415 India 13441 G 4736 4736