National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39   1                                    
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Guatemala 13026 C 32 32
1 Guatemala 13027 T 32 32
2 Guatemala 13028 G 32 32
3 Guatemala 13029 G 32 32
4 Guatemala 13030 T 32 32
5 Guatemala 13031 A 32 32
6 Guatemala 13032 A 32 32
7 Guatemala 13033 T 32 32
8 Guatemala 13034 G 32 32
9 Guatemala 13035 C 32 32
10 Guatemala 13036 A 32 32
11 Guatemala 13037 A 32 32
12 Guatemala 13038 C 32 32
13 Guatemala 13039 A 32 32
14 Guatemala 13040 G 32 32
15 Guatemala 13041 A 32 32
16 Guatemala 13042 A 32 32
17 Guatemala 13043 G 32 32
18 Guatemala 13044 T 32 32
19 Guatemala 13045 G 32 32
20 Guatemala 13046 C 32 32
21 Guatemala 13047 C 32 32
22 Guatemala 13048 T 32 32
23 Guatemala 13049 G 32 32
24 Guatemala 13050 C 32 32
25 Guatemala 13051 C 32 32
26 Guatemala 13052 A 32 32
27 Guatemala 13053 A 32 32
28 Guatemala 13054 T 32 32
29 Guatemala 13055 T 32 32
30 Guatemala 13056 C 32 32
31 Guatemala 13057 A 32 32
32 Guatemala 13058 A 32 32
33 Guatemala 13059 C 32 32
34 Guatemala 13060 T 32 32
35 Guatemala 13061 G 32 32
36 Guatemala 13062 T 32 32
37 Guatemala 13063 A 32 32
38 Guatemala 13064 T 32 32
39 Guatemala 13065 T 32 32
40 Guatemala 13066 A 32 32
41 Guatemala 13067 T 32 32
42 Guatemala 13068 C 32 32
43 Guatemala 13069 T 32 32
44 Guatemala 13070 T 32 32
45 Guatemala 13071 T 32 32
46 Guatemala 13072 C 32 32
47 Guatemala 13073 T 32 32
48 Guatemala 13074 G 32 32
49 Guatemala 13075 T 32 32
50 Guatemala 13076 G 32 32
51 Guatemala 13077 C 32 32
52 Guatemala 13078 T 32 32
53 Guatemala 13079 T 32 32
54 Guatemala 13080 T 32 32
55 Guatemala 13081 T 32 32
56 Guatemala 13082 G 32 32
57 Guatemala 13083 C 32 32
58 Guatemala 13084 T 32 32
59 Guatemala 13085 G 32 32
60 Guatemala 13086 T 32 32
61 Guatemala 13087 A 32 32
62 Guatemala 13088 G 32 32
63 Guatemala 13089 A 32 32
64 Guatemala 13090 T 32 32
65 Guatemala 13091 G 32 32
66 Guatemala 13092 C 32 32
67 Guatemala 13093 T 32 32
68 Guatemala 13094 G 32 32
69 Guatemala 13095 C 32 32
70 Guatemala 13096 T 32 32
71 Guatemala 13097 A 32 32
72 Guatemala 13098 A 32 32
73 Guatemala 13099 A 32 32
74 Guatemala 13100 G 32 32
75 Guatemala 13101 C 32 32
76 Guatemala 13102 T 32 32
77 Guatemala 13103 T 32 32
78 Guatemala 13104 A 32 32
79 Guatemala 13105 C 32 32
80 Guatemala 13106 A 32 32
81 Guatemala 13107 A 32 32
82 Guatemala 13108 A 32 32
83 Guatemala 13109 G 32 32
84 Guatemala 13110 A 32 32
85 Guatemala 13111 T 32 32
86 Guatemala 13112 T 32 32
87 Guatemala 13113 A 32 32
88 Guatemala 13114 T 32 32
89 Guatemala 13115 C 32 32
90 Guatemala 13116 T 32 32
91 Guatemala 13117 A 32 32
92 Guatemala 13118 G 32 32
93 Guatemala 13119 C 32 32
94 Guatemala 13120 T 32 32
95 Guatemala 13121 A 32 32
96 Guatemala 13122 G 32 32
97 Guatemala 13123 T 32 32
98 Guatemala 13124 G 32 32
99 Guatemala 13125 G 32 32
100 Guatemala 13126 G 32 32
101 Guatemala 13127 G 32 32
102 Guatemala 13128 G 32 32
103 Guatemala 13129 A 32 32
104 Guatemala 13130 C 32 32
105 Guatemala 13131 A 32 32
106 Guatemala 13132 A 32 32
107 Guatemala 13133 C 32 32
108 Guatemala 13134 C 32 32
109 Guatemala 13135 A 32 32
110 Guatemala 13136 A 32 32
111 Guatemala 13137 T 32 32
112 Guatemala 13138 C 32 32
113 Guatemala 13139 A 32 32
114 Guatemala 13140 C 32 32
115 Guatemala 13141 T 32 32
116 Guatemala 13142 A 32 32
117 Guatemala 13143 A 32 32
118 Guatemala 13144 T 32 32
119 Guatemala 13145 T 32 32
120 Guatemala 13146 G 32 32
121 Guatemala 13147 T 32 32
122 Guatemala 13148 G 32 32
123 Guatemala 13149 T 32 32
124 Guatemala 13150 T 32 32
125 Guatemala 13151 A 32 32
126 Guatemala 13152 A 32 32
127 Guatemala 13153 G 32 32
128 Guatemala 13154 A 32 32
129 Guatemala 13155 T 32 32
130 Guatemala 13156 G 32 32
131 Guatemala 13157 T 32 32
132 Guatemala 13158 T 32 32
133 Guatemala 13159 G 32 32
134 Guatemala 13160 T 32 32
135 Guatemala 13161 G 32 32
136 Guatemala 13162 T 32 32
137 Guatemala 13163 A 32 32
138 Guatemala 13164 C 32 32
139 Guatemala 13165 A 32 32
140 Guatemala 13166 C 32 32
141 Guatemala 13167 A 32 32
142 Guatemala 13168 C 32 32
143 Guatemala 13169 A 32 32
144 Guatemala 13170 C 32 32
145 Guatemala 13171 T 32 32
146 Guatemala 13172 G 32 32
147 Guatemala 13173 G 32 32
148 Guatemala 13174 T 32 32
149 Guatemala 13175 A 32 32
150 Guatemala 13176 C 32 32
151 Guatemala 13177 T 32 32
152 Guatemala 13178 G 32 32
153 Guatemala 13179 G 32 32
154 Guatemala 13180 T 32 32
155 Guatemala 13181 C 32 32
156 Guatemala 13182 A 32 32
157 Guatemala 13183 G 32 32
158 Guatemala 13184 G 32 32
159 Guatemala 13185 C 32 32
160 Guatemala 13186 A 32 32
161 Guatemala 13187 A 32 32
162 Guatemala 13188 T 32 32
163 Guatemala 13189 A 32 32
164 Guatemala 13190 A 32 32
165 Guatemala 13191 C 32 32
166 Guatemala 13192 A 32 32
167 Guatemala 13193 G 32 32
168 Guatemala 13194 T 32 32
169 Guatemala 13195 T 32 32
170 Guatemala 13196 A 32 32
171 Guatemala 13197 C 32 32
172 Guatemala 13198 A 32 32
173 Guatemala 13199 C 32 32
174 Guatemala 13200 C 32 32
175 Guatemala 13201 G 32 32
176 Guatemala 13202 G 32 32
177 Guatemala 13203 A 32 32
178 Guatemala 13204 A 32 32
179 Guatemala 13205 G 32 32
180 Guatemala 13206 C 32 32
181 Guatemala 13207 C 32 32
182 Guatemala 13208 A 32 32
183 Guatemala 13209 A 32 32
184 Guatemala 13210 T 32 32
185 Guatemala 13211 A 32 32
186 Guatemala 13212 T 32 32
187 Guatemala 13213 G 32 32
188 Guatemala 13214 G 32 32
189 Guatemala 13215 A 32 32
190 Guatemala 13216 T 32 32
191 Guatemala 13217 C 32 32
192 Guatemala 13218 A 32 32
193 Guatemala 13219 A 32 32
194 Guatemala 13220 G 32 32
195 Guatemala 13221 A 32 32
196 Guatemala 13222 A 32 32
197 Guatemala 13223 T 32 32
198 Guatemala 13224 C 32 32
199 Guatemala 13225 C 32 32
200 Guatemala 13226 T 32 32
201 Guatemala 13227 T 32 32
202 Guatemala 13228 T 32 32
203 Guatemala 13229 G 32 32
204 Guatemala 13230 G 32 32
205 Guatemala 13231 T 32 32
206 Guatemala 13232 G 32 32
207 Guatemala 13233 G 32 32
208 Guatemala 13234 T 32 32
209 Guatemala 13235 G 32 32
210 Guatemala 13236 C 32 32
211 Guatemala 13237 A 32 32
212 Guatemala 13238 T 32 32
213 Guatemala 13239 C 32 32
214 Guatemala 13240 G 32 32
215 Guatemala 13241 T 32 32
216 Guatemala 13242 G 32 32
217 Guatemala 13243 T 32 32
218 Guatemala 13244 T 32 32
219 Guatemala 13245 G 32 32
220 Guatemala 13246 T 32 32
221 Guatemala 13247 C 32 32
222 Guatemala 13248 T 32 32
223 Guatemala 13249 G 32 32
224 Guatemala 13250 T 32 32
225 Guatemala 13251 A 32 32
226 Guatemala 13252 C 32 32
227 Guatemala 13253 T 32 32
228 Guatemala 13254 G 32 32
229 Guatemala 13255 C 32 32
230 Guatemala 13256 C 32 32
231 Guatemala 13257 G 32 32
232 Guatemala 13258 T 32 32
233 Guatemala 13259 T 32 32
234 Guatemala 13260 G 32 32
235 Guatemala 13261 C 32 32
236 Guatemala 13262 C 32 32
237 Guatemala 13263 A 32 32
238 Guatemala 13264 C 32 32
239 Guatemala 13265 A 32 32
240 Guatemala 13266 T 32 32
241 Guatemala 13267 A 32 32
242 Guatemala 13268 G 32 32
243 Guatemala 13269 A 32 32
244 Guatemala 13270 T 32 32
245 Guatemala 13271 C 32 32
246 Guatemala 13272 A 32 32
247 Guatemala 13273 T 32 32
248 Guatemala 13274 C 32 32
249 Guatemala 13275 C 32 32
250 Guatemala 13276 A 32 32
251 Guatemala 13277 A 32 32
252 Guatemala 13278 A 32 32
253 Guatemala 13279 T 32 32
254 Guatemala 13280 C 32 32
255 Guatemala 13281 C 32 32
256 Guatemala 13282 T 32 32
257 Guatemala 13283 A 32 32
258 Guatemala 13284 A 32 32
259 Guatemala 13285 A 32 32
260 Guatemala 13286 G 32 32
261 Guatemala 13287 G 32 32
262 Guatemala 13288 A 32 32
263 Guatemala 13289 T 32 32
264 Guatemala 13290 T 32 32
265 Guatemala 13291 T 32 32
266 Guatemala 13292 T 32 32
267 Guatemala 13293 G 32 32
268 Guatemala 13294 T 32 32
269 Guatemala 13295 G 32 32
270 Guatemala 13296 A 32 32
271 Guatemala 13297 C 32 32
272 Guatemala 13298 T 32 32
273 Guatemala 13299 T 32 32
274 Guatemala 13300 A 32 32
275 Guatemala 13301 A 32 32
276 Guatemala 13302 A 32 32
277 Guatemala 13303 A 32 32
278 Guatemala 13304 G 32 32
279 Guatemala 13305 G 32 32
280 Guatemala 13306 T 32 32
281 Guatemala 13307 A 32 32
282 Guatemala 13308 A 32 32
283 Guatemala 13309 G 32 32
284 Guatemala 13310 T 32 32
285 Guatemala 13311 A 32 32
286 Guatemala 13312 T 32 32
287 Guatemala 13313 G 32 32
288 Guatemala 13314 T 32 32
289 Guatemala 13315 A 32 32
290 Guatemala 13316 C 32 32
291 Guatemala 13317 A 32 32
292 Guatemala 13318 A 32 32
293 Guatemala 13319 A 32 32
294 Guatemala 13320 T 32 32
295 Guatemala 13321 A 32 32
296 Guatemala 13322 C 32 32
297 Guatemala 13323 C 32 32
298 Guatemala 13324 T 32 32
299 Guatemala 13325 A 32 32
300 Guatemala 13326 C 32 32
301 Guatemala 13327 A 32 32
302 Guatemala 13328 A 32 32
303 Guatemala 13329 C 32 32
304 Guatemala 13330 T 32 32
305 Guatemala 13331 T 32 32
306 Guatemala 13332 G 32 32
307 Guatemala 13333 T 32 32
308 Guatemala 13334 G 32 32
309 Guatemala 13335 C 32 32
310 Guatemala 13336 T 32 32
311 Guatemala 13337 A 32 32
312 Guatemala 13338 A 32 32
313 Guatemala 13339 T 32 32
314 Guatemala 13340 G 32 32
315 Guatemala 13341 A 32 32
316 Guatemala 13342 C 32 32
317 Guatemala 13343 C 32 32
318 Guatemala 13344 C 32 32
319 Guatemala 13345 T 32 32
320 Guatemala 13346 G 32 32
321 Guatemala 13347 T 32 32
322 Guatemala 13348 G 32 32
323 Guatemala 13349 G 32 32
324 Guatemala 13350 G 32 32
325 Guatemala 13351 T 32 32
326 Guatemala 13352 T 32 32
327 Guatemala 13353 T 32 32
328 Guatemala 13354 T 32 32
329 Guatemala 13355 A 32 32
330 Guatemala 13356 C 32 32
331 Guatemala 13357 A 32 32
332 Guatemala 13358 C 32 32
333 Guatemala 13359 T 32 32
334 Guatemala 13360 T 32 32
335 Guatemala 13361 A 32 32
336 Guatemala 13362 A 32 32
337 Guatemala 13363 A 32 32
338 Guatemala 13364 A 32 32
339 Guatemala 13365 A 32 32
340 Guatemala 13366 C 32 32
341 Guatemala 13367 A 32 32
342 Guatemala 13368 C 32 32
343 Guatemala 13369 A 32 32
344 Guatemala 13370 G 32 32
345 Guatemala 13371 T 32 32
346 Guatemala 13372 C 32 32
347 Guatemala 13373 T 32 32
348 Guatemala 13374 G 32 32
349 Guatemala 13375 T 32 32
350 Guatemala 13376 A 32 32
351 Guatemala 13377 C 32 32
352 Guatemala 13378 C 32 32
353 Guatemala 13379 G 32 32
354 Guatemala 13380 T 32 32
355 Guatemala 13381 C 32 32
356 Guatemala 13382 T 32 32
357 Guatemala 13383 G 32 32
358 Guatemala 13384 C T 32 31 Cys4373Cys
359 Guatemala 13385 G 32 32
360 Guatemala 13386 G 32 32
361 Guatemala 13387 T 32 32
362 Guatemala 13388 A 32 32
363 Guatemala 13389 T 32 32
364 Guatemala 13390 G 32 32
365 Guatemala 13391 T 32 32
366 Guatemala 13392 G 32 32
367 Guatemala 13393 G 32 32
368 Guatemala 13394 A 32 32
369 Guatemala 13395 A 32 32
370 Guatemala 13396 A 32 32
371 Guatemala 13397 G 32 32
372 Guatemala 13398 G 32 32
373 Guatemala 13399 T 32 32
374 Guatemala 13400 T 32 32
375 Guatemala 13401 A 32 32
376 Guatemala 13402 T 32 32
377 Guatemala 13403 G 32 32
378 Guatemala 13404 G 32 32
379 Guatemala 13405 C 32 32
380 Guatemala 13406 T 32 32
381 Guatemala 13407 G 32 32
382 Guatemala 13408 T 32 32
383 Guatemala 13409 A 32 32
384 Guatemala 13410 G 32 32
385 Guatemala 13411 T 32 32
386 Guatemala 13412 T 32 32
387 Guatemala 13413 G 32 32
388 Guatemala 13414 T 32 32
389 Guatemala 13415 G 32 32
390 Guatemala 13416 A 32 32
391 Guatemala 13417 T 32 32
392 Guatemala 13418 C 32 32
393 Guatemala 13419 A 32 32
394 Guatemala 13420 A 32 32
395 Guatemala 13421 C 32 32
396 Guatemala 13422 T 32 32
397 Guatemala 13423 C 32 32
398 Guatemala 13424 C 32 32
399 Guatemala 13425 G 32 32
400 Guatemala 13426 C 32 32
401 Guatemala 13427 G 32 32
402 Guatemala 13428 A 32 32
403 Guatemala 13429 A 32 32
404 Guatemala 13430 C 32 32
405 Guatemala 13431 C 32 32
406 Guatemala 13432 C 32 32
407 Guatemala 13433 A 32 32
408 Guatemala 13434 T 32 32
409 Guatemala 13435 G 32 32
410 Guatemala 13436 C 32 32
411 Guatemala 13437 T 32 32
412 Guatemala 13438 T 32 32
413 Guatemala 13439 C 32 32
414 Guatemala 13440 A 32 32
415 Guatemala 13441 G 32 32