National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Greece 13026 C 137 137
1 Greece 13027 T 137 137
2 Greece 13028 G 137 137
3 Greece 13029 G 137 137
4 Greece 13030 T 137 137
5 Greece 13031 A 137 137
6 Greece 13032 A 137 137
7 Greece 13033 T 137 137
8 Greece 13034 G 139 139
9 Greece 13035 C 139 139
10 Greece 13036 A 139 139
11 Greece 13037 A 139 139
12 Greece 13038 C 139 139
13 Greece 13039 A 139 139
14 Greece 13040 G 139 139
15 Greece 13041 A 139 139
16 Greece 13042 A 139 139
17 Greece 13043 G 139 139
18 Greece 13044 T 139 139
19 Greece 13045 G 139 139
20 Greece 13046 C 139 139
21 Greece 13047 C 139 139
22 Greece 13048 T 139 139
23 Greece 13049 G 139 139
24 Greece 13050 C 139 139
25 Greece 13051 C 139 139
26 Greece 13052 A 139 139
27 Greece 13053 A 139 139
28 Greece 13054 T 139 139
29 Greece 13055 T 139 139
30 Greece 13056 C 139 139
31 Greece 13057 A 139 139
32 Greece 13058 A 139 139
33 Greece 13059 C 139 139
34 Greece 13060 T 139 139
35 Greece 13061 G 139 139
36 Greece 13062 T 139 139
37 Greece 13063 A 139 139
38 Greece 13064 T 139 139
39 Greece 13065 T 139 139
40 Greece 13066 A 139 139
41 Greece 13067 T 139 139
42 Greece 13068 C 139 139
43 Greece 13069 T 139 139
44 Greece 13070 T 139 139
45 Greece 13071 T 139 139
46 Greece 13072 C 139 139
47 Greece 13073 T 139 139
48 Greece 13074 G 139 139
49 Greece 13075 T 139 139
50 Greece 13076 G 139 139
51 Greece 13077 C 139 139
52 Greece 13078 T 139 139
53 Greece 13079 T 139 139
54 Greece 13080 T 139 139
55 Greece 13081 T 139 139
56 Greece 13082 G 139 139
57 Greece 13083 C 139 139
58 Greece 13084 T 139 139
59 Greece 13085 G 139 139
60 Greece 13086 T 139 139
61 Greece 13087 A 139 139
62 Greece 13088 G 139 139
63 Greece 13089 A 139 139
64 Greece 13090 T 139 139
65 Greece 13091 G 139 139
66 Greece 13092 C 139 139
67 Greece 13093 T 139 139
68 Greece 13094 G 139 139
69 Greece 13095 C 139 139
70 Greece 13096 T 139 139
71 Greece 13097 A 139 139
72 Greece 13098 A 139 139
73 Greece 13099 A 139 139
74 Greece 13100 G 139 139
75 Greece 13101 C 139 139
76 Greece 13102 T 139 139
77 Greece 13103 T 139 139
78 Greece 13104 A 139 139
79 Greece 13105 C 139 139
80 Greece 13106 A 139 139
81 Greece 13107 A 139 139
82 Greece 13108 A 139 139
83 Greece 13109 G 139 139
84 Greece 13110 A 139 139
85 Greece 13111 T 139 139
86 Greece 13112 T 139 139
87 Greece 13113 A 140 140
88 Greece 13114 T 140 140
89 Greece 13115 C 140 140
90 Greece 13116 T 140 140
91 Greece 13117 A 140 140
92 Greece 13118 G 140 140
93 Greece 13119 C 140 140
94 Greece 13120 T 140 140
95 Greece 13121 A 140 140
96 Greece 13122 G 140 140
97 Greece 13123 T 140 140
98 Greece 13124 G 140 140
99 Greece 13125 G 140 140
100 Greece 13126 G 140 140
101 Greece 13127 G 140 140
102 Greece 13128 G 140 140
103 Greece 13129 A 140 140
104 Greece 13130 C 140 140
105 Greece 13131 A 140 140
106 Greece 13132 A 140 140
107 Greece 13133 C 140 140
108 Greece 13134 C 140 140
109 Greece 13135 A 140 140
110 Greece 13136 A 140 140
111 Greece 13137 T 140 140
112 Greece 13138 C 140 140
113 Greece 13139 A 140 140
114 Greece 13140 C 140 140
115 Greece 13141 T 140 140
116 Greece 13142 A 140 140
117 Greece 13143 A 140 140
118 Greece 13144 T 140 140
119 Greece 13145 T 140 140
120 Greece 13146 G 140 140
121 Greece 13147 T 140 140
122 Greece 13148 G 140 140
123 Greece 13149 T 140 140
124 Greece 13150 T 140 140
125 Greece 13151 A 140 140
126 Greece 13152 A 140 140
127 Greece 13153 G 140 140
128 Greece 13154 A 140 140
129 Greece 13155 T 140 140
130 Greece 13156 G 140 140
131 Greece 13157 T 140 140
132 Greece 13158 T 140 140
133 Greece 13159 G 140 140
134 Greece 13160 T 140 140
135 Greece 13161 G 140 140
136 Greece 13162 T 140 140
137 Greece 13163 A 140 140
138 Greece 13164 C 140 140
139 Greece 13165 A 140 140
140 Greece 13166 C 140 140
141 Greece 13167 A 140 140
142 Greece 13168 C 140 140
143 Greece 13169 A 140 140
144 Greece 13170 C 140 140
145 Greece 13171 T 140 140
146 Greece 13172 G 140 140
147 Greece 13173 G 140 140
148 Greece 13174 T 140 140
149 Greece 13175 A 140 140
150 Greece 13176 C 140 140
151 Greece 13177 T 140 140
152 Greece 13178 G 140 140
153 Greece 13179 G 140 140
154 Greece 13180 T 140 140
155 Greece 13181 C 140 140
156 Greece 13182 A 140 140
157 Greece 13183 G 140 140
158 Greece 13184 G 140 140
159 Greece 13185 C 140 140
160 Greece 13186 A 140 140
161 Greece 13187 A 140 140
162 Greece 13188 T 140 140
163 Greece 13189 A 140 140
164 Greece 13190 A 140 140
165 Greece 13191 C 140 140
166 Greece 13192 A 140 140
167 Greece 13193 G 140 140
168 Greece 13194 T 140 140
169 Greece 13195 T 140 140
170 Greece 13196 A 140 140
171 Greece 13197 C 140 140
172 Greece 13198 A 140 140
173 Greece 13199 C 140 140
174 Greece 13200 C 140 140
175 Greece 13201 G 140 140
176 Greece 13202 G 140 140
177 Greece 13203 A 140 140
178 Greece 13204 A 140 140
179 Greece 13205 G 140 140
180 Greece 13206 C 140 140
181 Greece 13207 C 140 140
182 Greece 13208 A 140 140
183 Greece 13209 A 140 140
184 Greece 13210 T 140 140
185 Greece 13211 A 140 140
186 Greece 13212 T 140 140
187 Greece 13213 G 140 140
188 Greece 13214 G 140 140
189 Greece 13215 A 140 140
190 Greece 13216 T 140 140
191 Greece 13217 C 140 140
192 Greece 13218 A 140 140
193 Greece 13219 A 140 140
194 Greece 13220 G 140 140
195 Greece 13221 A 140 140
196 Greece 13222 A 140 140
197 Greece 13223 T 140 140
198 Greece 13224 C 140 140
199 Greece 13225 C 140 140
200 Greece 13226 T 140 140
201 Greece 13227 T 140 140
202 Greece 13228 T 140 140
203 Greece 13229 G 140 140
204 Greece 13230 G 140 140
205 Greece 13231 T 140 140
206 Greece 13232 G 140 140
207 Greece 13233 G 140 140
208 Greece 13234 T 140 140
209 Greece 13235 G 140 140
210 Greece 13236 C 140 140
211 Greece 13237 A 140 140
212 Greece 13238 T 140 140
213 Greece 13239 C 140 140
214 Greece 13240 G 140 140
215 Greece 13241 T 140 140
216 Greece 13242 G 140 140
217 Greece 13243 T 140 140
218 Greece 13244 T 140 140
219 Greece 13245 G 140 140
220 Greece 13246 T 140 140
221 Greece 13247 C 140 140
222 Greece 13248 T 140 140
223 Greece 13249 G 140 140
224 Greece 13250 T 140 140
225 Greece 13251 A 140 140
226 Greece 13252 C 140 140
227 Greece 13253 T 140 140
228 Greece 13254 G 140 140
229 Greece 13255 C 140 140
230 Greece 13256 C 140 140
231 Greece 13257 G 140 140
232 Greece 13258 T 140 140
233 Greece 13259 T 138 138
234 Greece 13260 G 138 138
235 Greece 13261 C 138 138
236 Greece 13262 C 138 138
237 Greece 13263 A 138 138
238 Greece 13264 C 138 138
239 Greece 13265 A 138 138
240 Greece 13266 T 138 138
241 Greece 13267 A 138 138
242 Greece 13268 G 138 138
243 Greece 13269 A 138 138
244 Greece 13270 T 138 138
245 Greece 13271 C 138 138
246 Greece 13272 A 138 138
247 Greece 13273 T 138 138
248 Greece 13274 C 138 138
249 Greece 13275 C 138 138
250 Greece 13276 A 138 138
251 Greece 13277 A 138 138
252 Greece 13278 A 138 138
253 Greece 13279 T 138 138
254 Greece 13280 C 138 138
255 Greece 13281 C 138 138
256 Greece 13282 T 138 138
257 Greece 13283 A 138 138
258 Greece 13284 A 138 138
259 Greece 13285 A 138 138
260 Greece 13286 G 138 138
261 Greece 13287 G 138 138
262 Greece 13288 A 138 138
263 Greece 13289 T 138 138
264 Greece 13290 T 138 138
265 Greece 13291 T 138 138
266 Greece 13292 T 138 138
267 Greece 13293 G 138 138
268 Greece 13294 T 138 138
269 Greece 13295 G 138 138
270 Greece 13296 A 138 138
271 Greece 13297 C 138 138
272 Greece 13298 T 138 138
273 Greece 13299 T 138 138
274 Greece 13300 A 138 138
275 Greece 13301 A 138 138
276 Greece 13302 A 138 138
277 Greece 13303 A 138 138
278 Greece 13304 G 138 138
279 Greece 13305 G 138 138
280 Greece 13306 T 138 138
281 Greece 13307 A 138 138
282 Greece 13308 A 138 138
283 Greece 13309 G 138 138
284 Greece 13310 T 138 138
285 Greece 13311 A 138 138
286 Greece 13312 T 138 138
287 Greece 13313 G 138 138
288 Greece 13314 T 138 138
289 Greece 13315 A 138 138
290 Greece 13316 C 138 138
291 Greece 13317 A 138 138
292 Greece 13318 A 138 138
293 Greece 13319 A 138 138
294 Greece 13320 T 138 138
295 Greece 13321 A 138 138
296 Greece 13322 C 138 138
297 Greece 13323 C 138 138
298 Greece 13324 T 138 138
299 Greece 13325 A 138 138
300 Greece 13326 C 138 138
301 Greece 13327 A 138 138
302 Greece 13328 A 138 138
303 Greece 13329 C 138 138
304 Greece 13330 T 138 138
305 Greece 13331 T 138 138
306 Greece 13332 G 138 138
307 Greece 13333 T 138 138
308 Greece 13334 G 138 138
309 Greece 13335 C 138 138
310 Greece 13336 T 138 138
311 Greece 13337 A 138 138
312 Greece 13338 A 138 138
313 Greece 13339 T 138 137
314 Greece 13340 G 138 138
315 Greece 13341 A 138 138
316 Greece 13342 C 138 138
317 Greece 13343 C 138 138
318 Greece 13344 C 138 138
319 Greece 13345 T 138 137
320 Greece 13346 G 138 137
321 Greece 13347 T 138 137
322 Greece 13348 G 138 137
323 Greece 13349 G 138 137
324 Greece 13350 G 138 137
325 Greece 13351 T 138 137
326 Greece 13352 T 138 137
327 Greece 13353 T 138 137
328 Greece 13354 T 138 137
329 Greece 13355 A 138 137
330 Greece 13356 C 138 137
331 Greece 13357 A 138 137
332 Greece 13358 C 138 137
333 Greece 13359 T 138 137
334 Greece 13360 T 138 137
335 Greece 13361 A 138 137
336 Greece 13362 A 138 137
337 Greece 13363 A 138 137
338 Greece 13364 A 138 137
339 Greece 13365 A 138 137
340 Greece 13366 C 138 138
341 Greece 13367 A 138 138
342 Greece 13368 C 138 138
343 Greece 13369 A 138 138
344 Greece 13370 G 138 138
345 Greece 13371 T 138 138
346 Greece 13372 C 138 138
347 Greece 13373 T 138 138
348 Greece 13374 G 138 138
349 Greece 13375 T 138 138
350 Greece 13376 A 138 138
351 Greece 13377 C 138 138
352 Greece 13378 C 138 138
353 Greece 13379 G 138 138
354 Greece 13380 T 138 138
355 Greece 13381 C 137 137
356 Greece 13382 T 137 137
357 Greece 13383 G 137 137
358 Greece 13384 C 137 137
359 Greece 13385 G 137 137
360 Greece 13386 G 137 137
361 Greece 13387 T 137 137
362 Greece 13388 A 137 137
363 Greece 13389 T 137 137
364 Greece 13390 G 137 137
365 Greece 13391 T 137 137
366 Greece 13392 G 137 137
367 Greece 13393 G 137 137
368 Greece 13394 A 137 137
369 Greece 13395 A 137 137
370 Greece 13396 A 137 137
371 Greece 13397 G 137 137
372 Greece 13398 G 137 137
373 Greece 13399 T 137 137
374 Greece 13400 T 137 137
375 Greece 13401 A 137 137
376 Greece 13402 T 137 137
377 Greece 13403 G 137 137
378 Greece 13404 G 137 137
379 Greece 13405 C 137 137
380 Greece 13406 T 137 137
381 Greece 13407 G 137 137
382 Greece 13408 T 137 137
383 Greece 13409 A 137 137
384 Greece 13410 G 137 137
385 Greece 13411 T 137 137
386 Greece 13412 T 137 137
387 Greece 13413 G 137 137
388 Greece 13414 T 137 137
389 Greece 13415 G 137 137
390 Greece 13416 A 137 137
391 Greece 13417 T 137 137
392 Greece 13418 C 137 137
393 Greece 13419 A 137 137
394 Greece 13420 A 137 137
395 Greece 13421 C 137 137
396 Greece 13422 T 137 137
397 Greece 13423 C 137 137
398 Greece 13424 C 137 137
399 Greece 13425 G 137 137
400 Greece 13426 C 137 137
401 Greece 13427 G 137 137
402 Greece 13428 A 137 137
403 Greece 13429 A 137 137
404 Greece 13430 C 137 137
405 Greece 13431 C 137 137
406 Greece 13432 C 137 137
407 Greece 13433 A 137 137
408 Greece 13434 T 137 137
409 Greece 13435 G 137 137
410 Greece 13436 C 137 137
411 Greece 13437 T 137 137
412 Greece 13438 T 137 137
413 Greece 13439 C 137 137
414 Greece 13440 A 137 137
415 Greece 13441 G 137 137