National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 1                                 2    
C   39   1                                    
D   21     2 1   1                            
E   12                                        
F   15                   1                    
G   39 1         3                   1        
H   9                                        
I   12                                        
K   24                       1     2          
L   24                   2           1        
M   12               1   1         1   1 1    
N   21                 1     1       2       1
P   24                         1     1        
Q   18             1                          
R   6                             2          
S   18               1               2        
T   39 1             4       1         2      
V   27               1                   3    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Germany 13026 C 4467 4467
1 Germany 13027 T 4467 4467
2 Germany 13028 G 4468 4468
3 Germany 13029 G 4469 4469
4 Germany 13030 T C 4469 4468 Gly4255Gly
5 Germany 13031 A T 4471 4470 Asn4256Tyr
6 Germany 13032 A 4471 4471
7 Germany 13033 T C 4471 4470 Asn4256Asn
8 Germany 13034 G 4471 4471
9 Germany 13035 C 4471 4471
10 Germany 13036 A 4472 4472
11 Germany 13037 A 4473 4473
12 Germany 13038 C 4473 4473
13 Germany 13039 A 4473 4473
14 Germany 13040 G 4473 4473
15 Germany 13041 A 4473 4473
16 Germany 13042 A 4473 4473
17 Germany 13043 G 4474 4474
18 Germany 13044 T 4474 4474
19 Germany 13045 G 4476 4476
20 Germany 13046 C 4476 4476
21 Germany 13047 C 4476 4476
22 Germany 13048 T 4476 4475
23 Germany 13049 G 4476 4475
24 Germany 13050 C 4476 4474
25 Germany 13051 C T 4476 4472 Ala4262Ala
26 Germany 13052 A 4477 4477
27 Germany 13053 A 4477 4477
28 Germany 13054 T 4477 4477
29 Germany 13055 T 4477 4477
30 Germany 13056 C 4477 4477
31 Germany 13057 A 4477 4477
32 Germany 13058 A G 4477 4476 Thr4265Ala
33 Germany 13059 C T 4477 4457 Thr4265Ile
34 Germany 13060 T 4477 4477
35 Germany 13061 G 4477 4477
36 Germany 13062 T 4477 4477
37 Germany 13063 A 4477 4477
38 Germany 13064 T 4477 4477
39 Germany 13065 T 4477 4477
40 Germany 13066 A 4477 4477
41 Germany 13067 T 4477 4477
42 Germany 13068 C 4477 4477
43 Germany 13069 T C 4477 4476 Ser4268Ser
44 Germany 13070 T 4477 4477
45 Germany 13071 T 4477 4477
46 Germany 13072 C 4479 4478
47 Germany 13073 T 4479 4479
48 Germany 13074 G 4479 4479
49 Germany 13075 T 4476 4476
50 Germany 13076 G 4476 4476
51 Germany 13077 C 4476 4476
52 Germany 13078 T 4476 4476
53 Germany 13079 T 4476 4476
54 Germany 13080 T 4476 4476
55 Germany 13081 T 4476 4476
56 Germany 13082 G 4476 4476
57 Germany 13083 C 4476 4476
58 Germany 13084 T 4476 4476
59 Germany 13085 G A 4476 4473 Val4274Ile
60 Germany 13086 T 4475 4475
61 Germany 13087 A 4475 4475
62 Germany 13088 G 4475 4475
63 Germany 13089 A 4475 4475
64 Germany 13090 T 4475 4475
65 Germany 13091 G 4474 4474
66 Germany 13092 C 4473 4473
67 Germany 13093 T 4471 4471
68 Germany 13094 G 4471 4471
69 Germany 13095 C 4471 4470
70 Germany 13096 T 4471 4470
71 Germany 13097 A 4471 4470
72 Germany 13098 A 4471 4469
73 Germany 13099 A 4471 4470
74 Germany 13100 G 4471 4471
75 Germany 13101 C 4471 4471
76 Germany 13102 T 4471 4471
77 Germany 13103 T 4471 4471
78 Germany 13104 A 4471 4471
79 Germany 13105 C 4471 4471
80 Germany 13106 A 4471 4471
81 Germany 13107 A 4471 4471
82 Germany 13108 A 4471 4471
83 Germany 13109 G 4471 4471
84 Germany 13110 A 4471 4471
85 Germany 13111 T 4471 4471
86 Germany 13112 T 4471 4470
87 Germany 13113 A 4471 4469
88 Germany 13114 T 4471 4470
89 Germany 13115 C T 4471 4469 Leu4284Leu
90 Germany 13116 T 4471 4470
91 Germany 13117 A 4471 4470
92 Germany 13118 G 4471 4470
93 Germany 13119 C T 4471 4469 Ala4285Val
94 Germany 13120 T 4471 4470
95 Germany 13121 A 4471 4470
96 Germany 13122 G 4471 4470
97 Germany 13123 T 4471 4468
98 Germany 13124 G 4470 4467
99 Germany 13125 G C 4470 4468 Gly4287Ala
100 Germany 13126 G T 4470 4463 Gly4287Gly
101 Germany 13127 G 4470 4469
102 Germany 13128 G 4470 4468
103 Germany 13129 A 4469 4466
104 Germany 13130 C 4469 4466
105 Germany 13131 A 4469 4466
106 Germany 13132 A 4469 4466
107 Germany 13133 C 4469 4467
108 Germany 13134 C 4469 4467
109 Germany 13135 A 4469 4467
110 Germany 13136 A 4469 4467
111 Germany 13137 T 4469 4467
112 Germany 13138 C 4469 4467
113 Germany 13139 A 4469 4467
114 Germany 13140 C A 4469 4465 Thr4292Asn
115 Germany 13141 T 4469 4467
116 Germany 13142 A 4469 4467
117 Germany 13143 A 4469 4467
118 Germany 13144 T 4469 4467
119 Germany 13145 T 4469 4467
120 Germany 13146 G 4469 4468
121 Germany 13147 T 4469 4468
122 Germany 13148 G 4469 4468
123 Germany 13149 T 4469 4468
124 Germany 13150 T 4469 4468
125 Germany 13151 A 4469 4468
126 Germany 13152 A 4476 4475
127 Germany 13153 G 4476 4475
128 Germany 13154 A 4476 4475
129 Germany 13155 T 4466 4464
130 Germany 13156 G 4466 4464
131 Germany 13157 T 4466 4464
132 Germany 13158 T C 4466 4463 Leu4298Ser
133 Germany 13159 G 4466 4464
134 Germany 13160 T 4466 4465
135 Germany 13161 G 4466 4465
136 Germany 13162 T 4466 4465
137 Germany 13163 A 4466 4465
138 Germany 13164 C 4466 4465
139 Germany 13165 A 4466 4464
140 Germany 13166 C 4466 4464
141 Germany 13167 A 4466 4464
142 Germany 13168 C 4466 4464
143 Germany 13169 A 4466 4464
144 Germany 13170 C 4466 4464
145 Germany 13171 T 4466 4464
146 Germany 13172 G 4466 4464
147 Germany 13173 G 4466 4464
148 Germany 13174 T 4466 4463
149 Germany 13175 A 4466 4464
150 Germany 13176 C 4466 4464
151 Germany 13177 T A 4466 4463 Thr4304Thr
152 Germany 13178 G 4466 4465
153 Germany 13179 G 4466 4465
154 Germany 13180 T 4466 4465
155 Germany 13181 C 4466 4465
156 Germany 13182 A 4466 4465
157 Germany 13183 G T 4466 4464 Gln4306His
158 Germany 13184 G 4466 4465
159 Germany 13185 C 4466 4465
160 Germany 13186 A 4466 4465
161 Germany 13187 A 4466 4464
162 Germany 13188 T 4466 4464
163 Germany 13189 A 4466 4464
164 Germany 13190 A 4466 4464
165 Germany 13191 C 4466 4464
166 Germany 13192 A 4466 4464
167 Germany 13193 G 4466 4464
168 Germany 13194 T 4466 4464
169 Germany 13195 T 4466 4464
170 Germany 13196 A 4466 4463
171 Germany 13197 C T 4466 4462 Thr4311Ile
172 Germany 13198 A 4466 4463
173 Germany 13199 C 4466 4464
174 Germany 13200 C 4466 4464
175 Germany 13201 G T 4466 4461 Pro4312Pro
176 Germany 13202 G 4466 4464
177 Germany 13203 A 4466 4464
178 Germany 13204 A 4466 4464
179 Germany 13205 G 4466 4464
180 Germany 13206 C 4466 4464
181 Germany 13207 C 4466 4464
182 Germany 13208 A 4466 4463
183 Germany 13209 A G 4466 4462 Asn4315Ser
184 Germany 13210 T 4466 4464
185 Germany 13211 A G 4466 4463 Met4316Val
186 Germany 13212 T 4466 4463
187 Germany 13213 G 4466 4464
188 Germany 13214 G 4466 4464
189 Germany 13215 A 4466 4464
190 Germany 13216 T G 4466 4463 Asp4317Glu
191 Germany 13217 C 4466 4465
192 Germany 13218 A 4466 4465
193 Germany 13219 A 4466 4465
194 Germany 13220 G 4466 4465
195 Germany 13221 A 4466 4465
196 Germany 13222 A 4466 4465
197 Germany 13223 T 4466 4465
198 Germany 13224 C 4466 4465
199 Germany 13225 C T 4466 4459 Ser4320Ser
200 Germany 13226 T C 4466 4464 Phe4321Leu
201 Germany 13227 T 4466 4465
202 Germany 13228 T 4466 4465
203 Germany 13229 G 4466 4465
204 Germany 13230 G 4466 4465
205 Germany 13231 T 4470 4470
206 Germany 13232 G 4470 4470
207 Germany 13233 G 4470 4470
208 Germany 13234 T 4470 4470
209 Germany 13235 G 4470 4470
210 Germany 13236 C 4470 4470
211 Germany 13237 A 4470 4470
212 Germany 13238 T 4470 4470
213 Germany 13239 C 4470 4470
214 Germany 13240 G 4470 4470
215 Germany 13241 T 4470 4470
216 Germany 13242 G 4470 4470
217 Germany 13243 T 4470 4470
218 Germany 13244 T 4470 4470
219 Germany 13245 G 4470 4470
220 Germany 13246 T 4470 4470
221 Germany 13247 C 4470 4470
222 Germany 13248 T 4470 4470
223 Germany 13249 G T 4470 4453 Leu4328Leu
224 Germany 13250 T 4470 4470
225 Germany 13251 A 4470 4470
226 Germany 13252 C 4470 4470
227 Germany 13253 T 4470 4469
228 Germany 13254 G 4466 4464
229 Germany 13255 C 4466 4464
230 Germany 13256 C 4466 4464
231 Germany 13257 G 4466 4464
232 Germany 13258 T C 4466 4463 Arg4331Arg
233 Germany 13259 T 4466 4464
234 Germany 13260 G 4466 4464
235 Germany 13261 C T 4466 4447 Cys4332Cys
236 Germany 13262 C 4466 4464
237 Germany 13263 A 4466 4464
238 Germany 13264 C 4466 4464
239 Germany 13265 A 4466 4464
240 Germany 13266 T 4466 4464
241 Germany 13267 A 4466 4464
242 Germany 13268 G 4466 4464
243 Germany 13269 A 4466 4464
244 Germany 13270 T 4467 4465
245 Germany 13271 C 4467 4465
246 Germany 13272 A 4467 4465
247 Germany 13273 T 4467 4465
248 Germany 13274 C 4467 4463
249 Germany 13275 C 4467 4465
250 Germany 13276 A 4467 4465
251 Germany 13277 A 4467 4465
252 Germany 13278 A 4467 4466
253 Germany 13279 T 4467 4466
254 Germany 13280 C 4467 4466
255 Germany 13281 C 4467 4467
256 Germany 13282 T 4467 4467
257 Germany 13283 A 4467 4467
258 Germany 13284 A 4467 4467
259 Germany 13285 A 4467 4467
260 Germany 13286 G 4467 4467
261 Germany 13287 G 4467 4467
262 Germany 13288 A G 4467 4462 Gly4341Gly
263 Germany 13289 T 4467 4467
264 Germany 13290 T 4467 4467
265 Germany 13291 T 4467 4466
266 Germany 13292 T 4467 4466
267 Germany 13293 G 4467 4466
268 Germany 13294 T 4467 4466
269 Germany 13295 G 4467 4466
270 Germany 13296 A 4467 4466
271 Germany 13297 C T 4467 4464 Asp4344Asp
272 Germany 13298 T 4467 4466
273 Germany 13299 T 4467 4466
274 Germany 13300 A 4467 4466
275 Germany 13301 A 4467 4466
276 Germany 13302 A 4467 4466
277 Germany 13303 A 4467 4466
278 Germany 13304 G 4467 4466
279 Germany 13305 G 4469 4469
280 Germany 13306 T 4470 4470
281 Germany 13307 A 4470 4470
282 Germany 13308 A G 4481 4479 Lys4348Arg
283 Germany 13309 G 4491 4491
284 Germany 13310 T 4492 4492
285 Germany 13311 A 4494 4494
286 Germany 13312 T 4494 4494
287 Germany 13313 G 4494 4494
288 Germany 13314 T 4494 4493
289 Germany 13315 A 4494 4493
290 Germany 13316 C 4494 4493
291 Germany 13317 A 4494 4493
292 Germany 13318 A 4494 4493
293 Germany 13319 A 4494 4493
294 Germany 13320 T 4494 4493
295 Germany 13321 A 4494 4493
296 Germany 13322 C 4494 4492
297 Germany 13323 C 4494 4493
298 Germany 13324 T 4494 4493
299 Germany 13325 A 4489 4488
300 Germany 13326 C 4489 4488
301 Germany 13327 A 4489 4488
302 Germany 13328 A 4489 4488
303 Germany 13329 C T 4489 4486 Thr4355Ile
304 Germany 13330 T 4489 4488
305 Germany 13331 T 4489 4488
306 Germany 13332 G 4489 4488
307 Germany 13333 T 4489 4488
308 Germany 13334 G 4489 4487
309 Germany 13335 C T 4489 4482 Ala4357Val
310 Germany 13336 T 4488 4486
311 Germany 13337 A 4488 4485
312 Germany 13338 A 4490 4487
313 Germany 13339 T G 4490 4485 Asn4358Lys
314 Germany 13340 G 4490 4487
315 Germany 13341 A G 4490 4486 Asp4359Gly
316 Germany 13342 C 4490 4487
317 Germany 13343 C 4490 4486
318 Germany 13344 C 4482 4477
319 Germany 13345 T 4481 4476
320 Germany 13346 G 4481 4479
321 Germany 13347 T 4481 4479
322 Germany 13348 G T 4465 4460 Val4361Val
323 Germany 13349 G 4464 4461
324 Germany 13350 G 4464 4460
325 Germany 13351 T 4464 4460
326 Germany 13352 T 4464 4461
327 Germany 13353 T 4464 4462
328 Germany 13354 T 4464 4462
329 Germany 13355 A 4464 4462
330 Germany 13356 C T 4464 4461 Thr4364Ile
331 Germany 13357 A 4464 4462
332 Germany 13358 C 4464 4462
333 Germany 13359 T 4464 4462
334 Germany 13360 T 4464 4462
335 Germany 13361 A 4464 4462
336 Germany 13362 A 4464 4462
337 Germany 13363 A 4464 4462
338 Germany 13364 A 4464 4462
339 Germany 13365 A G 4407 4404 Asn4367Ser
340 Germany 13366 C 4404 4402
341 Germany 13367 A 4404 4402
342 Germany 13368 C 4404 4402
343 Germany 13369 A 4403 4401
344 Germany 13370 G 4403 4401
345 Germany 13371 T 4403 4401
346 Germany 13372 C T 4402 4392 Val4369Val
347 Germany 13373 T 4402 4400
348 Germany 13374 G 4402 4401
349 Germany 13375 T 4402 4401
350 Germany 13376 A 4402 4401
351 Germany 13377 C 4402 4401
352 Germany 13378 C T 4401 4397 Thr4371Thr
353 Germany 13379 G 4371 4369
354 Germany 13380 T 4371 4369
355 Germany 13381 C T 4369 4366 Val4372Val
356 Germany 13382 T 4369 4367
357 Germany 13383 G 4367 4365
358 Germany 13384 C 4366 4364
359 Germany 13385 G 4364 4362
360 Germany 13386 G 4359 4357
361 Germany 13387 T 4359 4356
362 Germany 13388 A C 4359 4354 Met4375Leu
363 Germany 13389 T 4359 4356
364 Germany 13390 G 4359 4357
365 Germany 13391 T 4359 4357
366 Germany 13392 G 4358 4357
367 Germany 13393 G 4358 4357
368 Germany 13394 A 4358 4357
369 Germany 13395 A G 4357 4355 Lys4377Arg
370 Germany 13396 A T 4356 4353 Lys4377Asn
371 Germany 13397 G A 4356 4350 Gly4378Ser
372 Germany 13398 G 4356 4355
373 Germany 13399 T 4356 4355
374 Germany 13400 T 4356 4355
375 Germany 13401 A 4345 4345
376 Germany 13402 T 4342 4342
377 Germany 13403 G 4342 4342
378 Germany 13404 G 4340 4340
379 Germany 13405 C 4340 4340
380 Germany 13406 T 4333 4333
381 Germany 13407 G 4333 4333
382 Germany 13408 T 4333 4333
383 Germany 13409 A 4333 4333
384 Germany 13410 G T 4333 4332 Ser4382Ile
385 Germany 13411 T 4333 4333
386 Germany 13412 T 4333 4333
387 Germany 13413 G 4333 4333
388 Germany 13414 T 4333 4333
389 Germany 13415 G 4332 4332
390 Germany 13416 A 4332 4332
391 Germany 13417 T C 4332 4331 Asp4384Asp
392 Germany 13418 C 4332 4332
393 Germany 13419 A 4332 4332
394 Germany 13420 A 4332 4332
395 Germany 13421 C 4331 4331
396 Germany 13422 T 4331 4331
397 Germany 13423 C 4331 4330
398 Germany 13424 C 4331 4331
399 Germany 13425 G 4330 4329
400 Germany 13426 C T 4330 4328 Arg4387Arg
401 Germany 13427 G 4330 4330
402 Germany 13428 A 4330 4330
403 Germany 13429 A 4330 4330
404 Germany 13430 C T 4330 4329 Pro4389Ser
405 Germany 13431 C 4329 4329
406 Germany 13432 C 4329 4328
407 Germany 13433 A 4329 4328
408 Germany 13434 T C,G 4329 4325 Met4390Thr-p.Met4390Arg
409 Germany 13435 G A 4329 4327 Met4390Ile
410 Germany 13436 C 4329 4329
411 Germany 13437 T 4328 4328
412 Germany 13438 T 4327 4327
413 Germany 13439 C 4327 4327
414 Germany 13440 A 4327 4327
415 Germany 13441 G 4326 4326