National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39               1                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Georgia 13026 C 26 25
1 Georgia 13027 T 26 25
2 Georgia 13028 G 26 25
3 Georgia 13029 G 26 25
4 Georgia 13030 T 26 25
5 Georgia 13031 A 26 25
6 Georgia 13032 A 26 25
7 Georgia 13033 T 26 25
8 Georgia 13034 G 26 25
9 Georgia 13035 C 26 25
10 Georgia 13036 A 26 25
11 Georgia 13037 A 26 25
12 Georgia 13038 C 26 25
13 Georgia 13039 A 26 25
14 Georgia 13040 G 26 25
15 Georgia 13041 A 26 25
16 Georgia 13042 A 26 25
17 Georgia 13043 G 26 25
18 Georgia 13044 T 26 25
19 Georgia 13045 G 26 25
20 Georgia 13046 C 26 25
21 Georgia 13047 C 26 25
22 Georgia 13048 T 26 25
23 Georgia 13049 G 26 25
24 Georgia 13050 C 26 25
25 Georgia 13051 C 26 25
26 Georgia 13052 A 26 25
27 Georgia 13053 A 26 25
28 Georgia 13054 T 26 25
29 Georgia 13055 T 26 25
30 Georgia 13056 C 26 25
31 Georgia 13057 A 26 25
32 Georgia 13058 A 26 25
33 Georgia 13059 C 26 25
34 Georgia 13060 T 26 25
35 Georgia 13061 G 26 25
36 Georgia 13062 T 26 25
37 Georgia 13063 A 26 25
38 Georgia 13064 T 26 25
39 Georgia 13065 T 26 25
40 Georgia 13066 A 26 25
41 Georgia 13067 T 26 25
42 Georgia 13068 C 26 25
43 Georgia 13069 T 26 25
44 Georgia 13070 T 26 25
45 Georgia 13071 T 26 25
46 Georgia 13072 C 26 25
47 Georgia 13073 T 26 25
48 Georgia 13074 G 26 25
49 Georgia 13075 T 26 25
50 Georgia 13076 G 26 25
51 Georgia 13077 C 26 25
52 Georgia 13078 T 26 25
53 Georgia 13079 T 26 25
54 Georgia 13080 T 26 25
55 Georgia 13081 T 26 25
56 Georgia 13082 G 26 25
57 Georgia 13083 C 26 25
58 Georgia 13084 T 26 25
59 Georgia 13085 G 26 25
60 Georgia 13086 T 26 25
61 Georgia 13087 A 26 25
62 Georgia 13088 G 26 25
63 Georgia 13089 A 26 25
64 Georgia 13090 T 26 25
65 Georgia 13091 G 26 25
66 Georgia 13092 C 26 25
67 Georgia 13093 T 26 25
68 Georgia 13094 G 26 25
69 Georgia 13095 C 26 25
70 Georgia 13096 T 26 25
71 Georgia 13097 A 26 25
72 Georgia 13098 A 26 25
73 Georgia 13099 A 26 25
74 Georgia 13100 G 26 25
75 Georgia 13101 C 26 25
76 Georgia 13102 T 26 25
77 Georgia 13103 T 26 25
78 Georgia 13104 A 26 25
79 Georgia 13105 C 26 25
80 Georgia 13106 A 26 25
81 Georgia 13107 A 26 25
82 Georgia 13108 A 26 25
83 Georgia 13109 G 26 25
84 Georgia 13110 A 26 25
85 Georgia 13111 T 26 25
86 Georgia 13112 T 26 25
87 Georgia 13113 A 26 25
88 Georgia 13114 T 26 25
89 Georgia 13115 C 26 25
90 Georgia 13116 T 26 25
91 Georgia 13117 A 26 25
92 Georgia 13118 G 26 25
93 Georgia 13119 C 26 25
94 Georgia 13120 T 26 25
95 Georgia 13121 A 26 25
96 Georgia 13122 G 26 25
97 Georgia 13123 T 26 25
98 Georgia 13124 G 26 25
99 Georgia 13125 G 26 25
100 Georgia 13126 G 26 25
101 Georgia 13127 G 26 25
102 Georgia 13128 G 26 25
103 Georgia 13129 A 26 25
104 Georgia 13130 C 26 25
105 Georgia 13131 A 26 25
106 Georgia 13132 A 26 25
107 Georgia 13133 C 26 25
108 Georgia 13134 C 26 25
109 Georgia 13135 A 26 25
110 Georgia 13136 A 26 25
111 Georgia 13137 T 26 25
112 Georgia 13138 C 26 25
113 Georgia 13139 A 26 25
114 Georgia 13140 C 26 25
115 Georgia 13141 T 26 25
116 Georgia 13142 A 26 25
117 Georgia 13143 A 26 25
118 Georgia 13144 T 26 25
119 Georgia 13145 T 26 25
120 Georgia 13146 G 26 25
121 Georgia 13147 T 26 25
122 Georgia 13148 G 26 25
123 Georgia 13149 T 26 25
124 Georgia 13150 T 26 25
125 Georgia 13151 A 26 25
126 Georgia 13152 A 26 25
127 Georgia 13153 G 26 25
128 Georgia 13154 A 26 25
129 Georgia 13155 T 26 25
130 Georgia 13156 G 26 25
131 Georgia 13157 T 26 25
132 Georgia 13158 T 26 25
133 Georgia 13159 G 26 25
134 Georgia 13160 T 26 25
135 Georgia 13161 G 26 25
136 Georgia 13162 T 26 25
137 Georgia 13163 A 26 25
138 Georgia 13164 C 26 25
139 Georgia 13165 A 26 25
140 Georgia 13166 C 26 25
141 Georgia 13167 A 26 25
142 Georgia 13168 C 26 25
143 Georgia 13169 A 26 25
144 Georgia 13170 C 26 25
145 Georgia 13171 T 26 25
146 Georgia 13172 G 26 25
147 Georgia 13173 G 26 25
148 Georgia 13174 T 26 25
149 Georgia 13175 A 26 25
150 Georgia 13176 C 26 25
151 Georgia 13177 T 26 25
152 Georgia 13178 G 26 25
153 Georgia 13179 G 26 25
154 Georgia 13180 T 26 25
155 Georgia 13181 C 26 25
156 Georgia 13182 A 26 25
157 Georgia 13183 G 26 25
158 Georgia 13184 G 26 25
159 Georgia 13185 C 26 25
160 Georgia 13186 A 26 25
161 Georgia 13187 A 26 25
162 Georgia 13188 T 26 25
163 Georgia 13189 A 26 25
164 Georgia 13190 A 26 25
165 Georgia 13191 C 26 25
166 Georgia 13192 A 26 25
167 Georgia 13193 G 26 25
168 Georgia 13194 T 26 25
169 Georgia 13195 T 26 25
170 Georgia 13196 A 26 25
171 Georgia 13197 C 26 25
172 Georgia 13198 A 26 25
173 Georgia 13199 C 26 25
174 Georgia 13200 C 26 25
175 Georgia 13201 G 26 25
176 Georgia 13202 G 26 25
177 Georgia 13203 A 26 25
178 Georgia 13204 A 26 25
179 Georgia 13205 G 26 25
180 Georgia 13206 C 26 25
181 Georgia 13207 C 26 25
182 Georgia 13208 A 26 25
183 Georgia 13209 A 26 25
184 Georgia 13210 T 26 25
185 Georgia 13211 A 26 25
186 Georgia 13212 T 26 25
187 Georgia 13213 G 26 25
188 Georgia 13214 G 26 25
189 Georgia 13215 A 26 25
190 Georgia 13216 T 26 25
191 Georgia 13217 C 26 25
192 Georgia 13218 A 26 25
193 Georgia 13219 A 26 25
194 Georgia 13220 G 26 25
195 Georgia 13221 A 26 25
196 Georgia 13222 A 26 25
197 Georgia 13223 T 26 25
198 Georgia 13224 C 26 25
199 Georgia 13225 C 26 25
200 Georgia 13226 T 26 25
201 Georgia 13227 T 26 25
202 Georgia 13228 T 26 25
203 Georgia 13229 G 26 25
204 Georgia 13230 G 26 25
205 Georgia 13231 T 26 25
206 Georgia 13232 G 26 25
207 Georgia 13233 G 26 25
208 Georgia 13234 T 26 25
209 Georgia 13235 G 26 25
210 Georgia 13236 C 26 25
211 Georgia 13237 A 26 25
212 Georgia 13238 T 26 25
213 Georgia 13239 C 26 25
214 Georgia 13240 G 26 25
215 Georgia 13241 T 26 25
216 Georgia 13242 G 26 25
217 Georgia 13243 T 26 25
218 Georgia 13244 T 26 25
219 Georgia 13245 G 26 25
220 Georgia 13246 T 26 25
221 Georgia 13247 C 26 25
222 Georgia 13248 T 26 25
223 Georgia 13249 G 26 25
224 Georgia 13250 T 26 25
225 Georgia 13251 A 26 25
226 Georgia 13252 C 26 25
227 Georgia 13253 T 26 25
228 Georgia 13254 G 26 25
229 Georgia 13255 C 26 25
230 Georgia 13256 C 26 25
231 Georgia 13257 G 26 25
232 Georgia 13258 T 26 25
233 Georgia 13259 T 26 25
234 Georgia 13260 G 26 25
235 Georgia 13261 C 26 25
236 Georgia 13262 C 26 25
237 Georgia 13263 A 26 25
238 Georgia 13264 C 26 25
239 Georgia 13265 A 26 25
240 Georgia 13266 T 26 25
241 Georgia 13267 A 26 25
242 Georgia 13268 G 26 25
243 Georgia 13269 A 26 25
244 Georgia 13270 T 26 25
245 Georgia 13271 C 26 25
246 Georgia 13272 A 26 25
247 Georgia 13273 T 26 25
248 Georgia 13274 C 26 25
249 Georgia 13275 C 26 25
250 Georgia 13276 A 26 25
251 Georgia 13277 A 26 25
252 Georgia 13278 A 26 25
253 Georgia 13279 T 26 25
254 Georgia 13280 C 26 25
255 Georgia 13281 C 26 25
256 Georgia 13282 T 26 25
257 Georgia 13283 A 26 25
258 Georgia 13284 A 26 25
259 Georgia 13285 A 26 25
260 Georgia 13286 G 26 25
261 Georgia 13287 G 26 25
262 Georgia 13288 A 26 25
263 Georgia 13289 T 26 25
264 Georgia 13290 T 26 25
265 Georgia 13291 T 26 25
266 Georgia 13292 T 26 25
267 Georgia 13293 G 26 25
268 Georgia 13294 T 26 25
269 Georgia 13295 G 26 25
270 Georgia 13296 A 26 25
271 Georgia 13297 C 26 25
272 Georgia 13298 T 26 25
273 Georgia 13299 T 26 25
274 Georgia 13300 A 26 25
275 Georgia 13301 A 26 25
276 Georgia 13302 A 26 25
277 Georgia 13303 A 26 25
278 Georgia 13304 G 26 25
279 Georgia 13305 G 26 25
280 Georgia 13306 T 26 25
281 Georgia 13307 A 26 25
282 Georgia 13308 A 26 25
283 Georgia 13309 G 26 25
284 Georgia 13310 T 26 25
285 Georgia 13311 A 26 25
286 Georgia 13312 T 26 25
287 Georgia 13313 G 26 25
288 Georgia 13314 T 26 25
289 Georgia 13315 A 26 25
290 Georgia 13316 C 26 25
291 Georgia 13317 A 26 25
292 Georgia 13318 A 26 25
293 Georgia 13319 A 26 25
294 Georgia 13320 T 26 25
295 Georgia 13321 A 26 25
296 Georgia 13322 C 26 25
297 Georgia 13323 C 26 25
298 Georgia 13324 T 26 25
299 Georgia 13325 A 26 25
300 Georgia 13326 C 26 25
301 Georgia 13327 A 26 25
302 Georgia 13328 A 26 25
303 Georgia 13329 C T 26 24 Thr4355Ile
304 Georgia 13330 T 26 25
305 Georgia 13331 T 26 25
306 Georgia 13332 G 26 25
307 Georgia 13333 T 26 25
308 Georgia 13334 G 26 25
309 Georgia 13335 C 26 25
310 Georgia 13336 T 26 25
311 Georgia 13337 A 26 25
312 Georgia 13338 A 26 25
313 Georgia 13339 T 26 25
314 Georgia 13340 G 26 25
315 Georgia 13341 A 26 25
316 Georgia 13342 C 26 25
317 Georgia 13343 C 26 25
318 Georgia 13344 C 26 25
319 Georgia 13345 T 26 25
320 Georgia 13346 G 26 25
321 Georgia 13347 T 26 25
322 Georgia 13348 G 26 25
323 Georgia 13349 G 26 25
324 Georgia 13350 G 26 25
325 Georgia 13351 T 26 25
326 Georgia 13352 T 26 25
327 Georgia 13353 T 26 25
328 Georgia 13354 T 26 25
329 Georgia 13355 A 26 25
330 Georgia 13356 C 26 25
331 Georgia 13357 A 26 25
332 Georgia 13358 C 26 25
333 Georgia 13359 T 26 25
334 Georgia 13360 T 26 25
335 Georgia 13361 A 26 25
336 Georgia 13362 A 26 25
337 Georgia 13363 A 26 25
338 Georgia 13364 A 26 25
339 Georgia 13365 A 26 25
340 Georgia 13366 C 26 25
341 Georgia 13367 A 26 25
342 Georgia 13368 C 26 25
343 Georgia 13369 A 26 25
344 Georgia 13370 G 26 25
345 Georgia 13371 T 26 25
346 Georgia 13372 C 26 25
347 Georgia 13373 T 26 25
348 Georgia 13374 G 26 25
349 Georgia 13375 T 26 25
350 Georgia 13376 A 26 25
351 Georgia 13377 C 26 25
352 Georgia 13378 C 26 25
353 Georgia 13379 G 26 25
354 Georgia 13380 T 26 25
355 Georgia 13381 C 26 25
356 Georgia 13382 T 26 25
357 Georgia 13383 G 26 25
358 Georgia 13384 C 26 25
359 Georgia 13385 G 26 25
360 Georgia 13386 G 26 25
361 Georgia 13387 T 26 25
362 Georgia 13388 A 26 25
363 Georgia 13389 T 26 25
364 Georgia 13390 G 26 25
365 Georgia 13391 T 26 25
366 Georgia 13392 G 26 25
367 Georgia 13393 G 26 25
368 Georgia 13394 A 26 25
369 Georgia 13395 A 26 25
370 Georgia 13396 A 26 25
371 Georgia 13397 G 26 25
372 Georgia 13398 G 26 25
373 Georgia 13399 T 26 25
374 Georgia 13400 T 26 25
375 Georgia 13401 A 26 25
376 Georgia 13402 T 26 25
377 Georgia 13403 G 26 25
378 Georgia 13404 G 26 25
379 Georgia 13405 C 26 25
380 Georgia 13406 T 26 25
381 Georgia 13407 G 26 25
382 Georgia 13408 T 26 25
383 Georgia 13409 A 26 25
384 Georgia 13410 G 26 25
385 Georgia 13411 T 26 25
386 Georgia 13412 T 26 25
387 Georgia 13413 G 26 25
388 Georgia 13414 T 26 25
389 Georgia 13415 G 26 25
390 Georgia 13416 A 26 25
391 Georgia 13417 T 26 25
392 Georgia 13418 C 26 25
393 Georgia 13419 A 26 25
394 Georgia 13420 A 26 25
395 Georgia 13421 C 26 25
396 Georgia 13422 T 26 25
397 Georgia 13423 C 26 25
398 Georgia 13424 C 26 25
399 Georgia 13425 G 26 25
400 Georgia 13426 C 26 25
401 Georgia 13427 G 26 25
402 Georgia 13428 A 26 25
403 Georgia 13429 A 26 25
404 Georgia 13430 C 26 25
405 Georgia 13431 C 26 25
406 Georgia 13432 C 26 25
407 Georgia 13433 A 26 25
408 Georgia 13434 T 26 25
409 Georgia 13435 G 26 25
410 Georgia 13436 C 26 25
411 Georgia 13437 T 26 25
412 Georgia 13438 T 26 25
413 Georgia 13439 C 26 25
414 Georgia 13440 A 26 25
415 Georgia 13441 G 26 25