National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 1                             1   2    
C   39                                        
D   21     1                                  
E   12                                        
F   15                                        
G   39                                        
H   9             3                          
I   12                                        
K   24       1         1                      
L   24                   2                    
M   12               1                        
N   21                       1         1      
P   24                   1     3     1        
Q   18                           2            
R   6                             1          
S   18                                        
T   39               3       1                
V   27                                   2    
W   3                                        
Y   15                                       2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 France 13026 C 4205 4205
1 France 13027 T 4207 4207
2 France 13028 G 4207 4207
3 France 13029 G 4207 4206
4 France 13030 T 4208 4206
5 France 13031 A 4208 4208
6 France 13032 A 4210 4208
7 France 13033 T 4210 4210
8 France 13034 G 4211 4211
9 France 13035 C 4216 4216
10 France 13036 A 4216 4215
11 France 13037 A 4216 4214
12 France 13038 C 4217 4215
13 France 13039 A 4217 4216
14 France 13040 G 4217 4217
15 France 13041 A 4217 4216
16 France 13042 A 4217 4215
17 France 13043 G 4217 4215
18 France 13044 T 4217 4217
19 France 13045 G 4217 4217
20 France 13046 C 4217 4215
21 France 13047 C 4217 4215
22 France 13048 T 4217 4217
23 France 13049 G 4217 4215
24 France 13050 C 4217 4217
25 France 13051 C T 4218 4215 Ala4262Ala
26 France 13052 A 4218 4218
27 France 13053 A 4219 4218
28 France 13054 T 4219 4219
29 France 13055 T 4219 4219
30 France 13056 C 4221 4219
31 France 13057 A 4221 4220
32 France 13058 A 4222 4221
33 France 13059 C T 4223 4222 Thr4265Ile
34 France 13060 T 4223 4222
35 France 13061 G 4228 4228
36 France 13062 T 4229 4229
37 France 13063 A 4229 4228
38 France 13064 T 4229 4229
39 France 13065 T 4229 4227
40 France 13066 A 4231 4229
41 France 13067 T 4231 4231
42 France 13068 C 4231 4231
43 France 13069 T 4231 4230
44 France 13070 T 4232 4231
45 France 13071 T 4232 4231
46 France 13072 C 4232 4230
47 France 13073 T 4232 4229
48 France 13074 G 4234 4232
49 France 13075 T 4234 4233
50 France 13076 G 4235 4234
51 France 13077 C 4235 4233
52 France 13078 T 4235 4234
53 France 13079 T 4235 4232
54 France 13080 T 4235 4233
55 France 13081 T 4235 4234
56 France 13082 G 4236 4235
57 France 13083 C 4236 4235
58 France 13084 T 4236 4234
59 France 13085 G 4236 4235
60 France 13086 T 4236 4234
61 France 13087 A 4236 4236
62 France 13088 G 4236 4236
63 France 13089 A 4238 4238
64 France 13090 T 4238 4236
65 France 13091 G 4238 4235
66 France 13092 C 4238 4234
67 France 13093 T 4238 4234
68 France 13094 G 4239 4236
69 France 13095 C 4239 4237
70 France 13096 T 4239 4234
71 France 13097 A 4239 4237
72 France 13098 A 4239 4236
73 France 13099 A 4239 4237
74 France 13100 G 4239 4237
75 France 13101 C 4239 4234
76 France 13102 T 4238 4230
77 France 13103 T 4238 4231
78 France 13104 A 4238 4234
79 France 13105 C T 4238 4227 Tyr4280Tyr
80 France 13106 A 4239 4235
81 France 13107 A 4240 4236
82 France 13108 A 4242 4237
83 France 13109 G 4243 4238
84 France 13110 A 4243 4236
85 France 13111 T 4243 4238
86 France 13112 T 4244 4234
87 France 13113 A 4244 4238
88 France 13114 T C 4244 4237 Tyr4283Tyr
89 France 13115 C T 4244 4236 Leu4284Leu
90 France 13116 T 4244 4238
91 France 13117 A 4247 4239
92 France 13118 G 4247 4240
93 France 13119 C T 4247 4237 Ala4285Val
94 France 13120 T 4247 4237
95 France 13121 A 4247 4238
96 France 13122 G 4247 4237
97 France 13123 T 4247 4238
98 France 13124 G 4247 4237
99 France 13125 G 4248 4238
100 France 13126 G 4248 4233
101 France 13127 G 4248 4236
102 France 13128 G 4248 4236
103 France 13129 A 4248 4235
104 France 13130 C 4248 4235
105 France 13131 A 4248 4234
106 France 13132 A G 4250 4238 Gln4289Gln
107 France 13133 C 4250 4239
108 France 13134 C 4250 4238
109 France 13135 A 4250 4238
110 France 13136 A 4251 4238
111 France 13137 T 4251 4239
112 France 13138 C 4251 4239
113 France 13139 A 4251 4235
114 France 13140 C 4251 4238
115 France 13141 T 4250 4237
116 France 13142 A 4250 4237
117 France 13143 A 4250 4236
118 France 13144 T 4250 4237
119 France 13145 T 4250 4235
120 France 13146 G 4252 4242
121 France 13147 T 4252 4241
122 France 13148 G 4253 4243
123 France 13149 T 4252 4243
124 France 13150 T 4252 4244
125 France 13151 A 4254 4248
126 France 13152 A 4254 4248
127 France 13153 G A 4254 4239 Lys4296Lys
128 France 13154 A 4254 4249
129 France 13155 T 4253 4245
130 France 13156 G 4255 4249
131 France 13157 T 4255 4248
132 France 13158 T 4256 4251
133 France 13159 G 4262 4256
134 France 13160 T 4262 4257
135 France 13161 G 4263 4259
136 France 13162 T 4263 4258
137 France 13163 A 4263 4259
138 France 13164 C 4263 4259
139 France 13165 A 4262 4256
140 France 13166 C 4262 4257
141 France 13167 A 4262 4256
142 France 13168 C T 4264 4259 His4301His
143 France 13169 A 4264 4261
144 France 13170 C 4264 4261
145 France 13171 T 4264 4262
146 France 13172 G 4265 4263
147 France 13173 G 4266 4264
148 France 13174 T 4266 4264
149 France 13175 A 4265 4262
150 France 13176 C T 4265 4260 Thr4304Ile
151 France 13177 T 4262 4256
152 France 13178 G 4263 4257
153 France 13179 G 4262 4257
154 France 13180 T 4262 4256
155 France 13181 C 4262 4255
156 France 13182 A 4262 4255
157 France 13183 G 4262 4257
158 France 13184 G 4262 4257
159 France 13185 C 4262 4258
160 France 13186 A 4262 4258
161 France 13187 A 4262 4258
162 France 13188 T 4262 4260
163 France 13189 A 4262 4260
164 France 13190 A 4262 4260
165 France 13191 C 4265 4264
166 France 13192 A 4262 4260
167 France 13193 G 4262 4260
168 France 13194 T 4262 4260
169 France 13195 T 4262 4260
170 France 13196 A 4262 4259
171 France 13197 C T 4262 4255 Thr4311Ile
172 France 13198 A 4262 4259
173 France 13199 C 4262 4259
174 France 13200 C 4261 4258
175 France 13201 G T 4261 4257 Pro4312Pro
176 France 13202 G 4261 4257
177 France 13203 A 4261 4257
178 France 13204 A 4261 4259
179 France 13205 G T 4261 4257 Ala4314Ser
180 France 13206 C 4261 4260
181 France 13207 C 4261 4260
182 France 13208 A 4260 4259
183 France 13209 A 4260 4259
184 France 13210 T 4260 4259
185 France 13211 A 4260 4259
186 France 13212 T 4260 4259
187 France 13213 G A 4257 4252 Met4316Ile
188 France 13214 G 4257 4253
189 France 13215 A 4257 4251
190 France 13216 T 4257 4252
191 France 13217 C 4258 4255
192 France 13218 A 4258 4255
193 France 13219 A G 4258 4253 Gln4318Gln
194 France 13220 G 4258 4255
195 France 13221 A 4258 4254
196 France 13222 A 4258 4254
197 France 13223 T 4257 4252
198 France 13224 C 4258 4254
199 France 13225 C 4259 4254
200 France 13226 T 4258 4253
201 France 13227 T 4258 4253
202 France 13228 T 4258 4253
203 France 13229 G 4258 4253
204 France 13230 G 4258 4253
205 France 13231 T 4259 4254
206 France 13232 G 4259 4253
207 France 13233 G 4259 4254
208 France 13234 T 4259 4253
209 France 13235 G 4260 4255
210 France 13236 C 4260 4254
211 France 13237 A 4262 4256
212 France 13238 T 4262 4256
213 France 13239 C 4261 4255
214 France 13240 G 4264 4259
215 France 13241 T 4264 4258
216 France 13242 G 4265 4260
217 France 13243 T 4265 4260
218 France 13244 T 4266 4260
219 France 13245 G 4266 4261
220 France 13246 T 4266 4260
221 France 13247 C 4266 4261
222 France 13248 T 4265 4260
223 France 13249 G 4266 4262
224 France 13250 T 4266 4262
225 France 13251 A 4266 4262
226 France 13252 C 4267 4263
227 France 13253 T 4266 4262
228 France 13254 G 4266 4263
229 France 13255 C 4266 4261
230 France 13256 C 4266 4263
231 France 13257 G 4266 4263
232 France 13258 T 4265 4262
233 France 13259 T 4265 4262
234 France 13260 G 4266 4263
235 France 13261 C 4266 4263
236 France 13262 C 4266 4263
237 France 13263 A 4267 4262
238 France 13264 C T 4267 4262 His4333His
239 France 13265 A 4267 4264
240 France 13266 T 4267 4264
241 France 13267 A 4266 4264
242 France 13268 G 4266 4265
243 France 13269 A 4266 4265
244 France 13270 T 4266 4265
245 France 13271 C 4264 4263
246 France 13272 A 4263 4263
247 France 13273 T C 4263 4261 His4336His
248 France 13274 C T 4264 4260 Pro4337Ser
249 France 13275 C T 4264 4259 Pro4337Leu
250 France 13276 A 4265 4262
251 France 13277 A 4264 4260
252 France 13278 A 4264 4261
253 France 13279 T 4264 4261
254 France 13280 C 4264 4261
255 France 13281 C 4263 4260
256 France 13282 T C 4262 4258 Pro4339Pro
257 France 13283 A 4263 4257
258 France 13284 A 4263 4257
259 France 13285 A 4263 4260
260 France 13286 G 4263 4260
261 France 13287 G 4263 4259
262 France 13288 A 4262 4256
263 France 13289 T 4262 4255
264 France 13290 T 4262 4254
265 France 13291 T 4262 4254
266 France 13292 T 4262 4253
267 France 13293 G 4262 4253
268 France 13294 T 4262 4254
269 France 13295 G 4262 4252
270 France 13296 A 4262 4255
271 France 13297 C T 4262 4254 Asp4344Asp
272 France 13298 T 4262 4256
273 France 13299 T 4262 4256
274 France 13300 A 4262 4256
275 France 13301 A 4262 4255
276 France 13302 A 4262 4256
277 France 13303 A 4262 4256
278 France 13304 G 4262 4256
279 France 13305 G 4262 4256
280 France 13306 T 4262 4254
281 France 13307 A 4262 4253
282 France 13308 A 4262 4256
283 France 13309 G 4262 4256
284 France 13310 T 4262 4255
285 France 13311 A 4263 4257
286 France 13312 T 4263 4256
287 France 13313 G 4264 4256
288 France 13314 T 4264 4256
289 France 13315 A 4264 4255
290 France 13316 C 4264 4256
291 France 13317 A 4262 4254
292 France 13318 A 4259 4248
293 France 13319 A 4259 4246
294 France 13320 T 4259 4248
295 France 13321 A 4259 4248
296 France 13322 C 4259 4251
297 France 13323 C 4258 4251
298 France 13324 T 4257 4248
299 France 13325 A 4257 4249
300 France 13326 C 4257 4250
301 France 13327 A 4257 4251
302 France 13328 A 4257 4252
303 France 13329 C A 4257 4249 Thr4355Asn
304 France 13330 T 4256 4249
305 France 13331 T 4253 4246
306 France 13332 G 4254 4250
307 France 13333 T 4254 4250
308 France 13334 G 4255 4251
309 France 13335 C T 4255 4247 Ala4357Val
310 France 13336 T 4254 4250
311 France 13337 A 4254 4250
312 France 13338 A 4253 4250
313 France 13339 T C 4253 4246 Asn4358Asn
314 France 13340 G 4253 4250
315 France 13341 A 4252 4246
316 France 13342 C 4253 4250
317 France 13343 C 4252 4248
318 France 13344 C 4251 4246
319 France 13345 T 4250 4246
320 France 13346 G 4250 4245
321 France 13347 T 4250 4246
322 France 13348 G T 4250 4244 Val4361Val
323 France 13349 G 4250 4247
324 France 13350 G 4250 4245
325 France 13351 T 4250 4244
326 France 13352 T 4250 4245
327 France 13353 T 4250 4246
328 France 13354 T 4250 4246
329 France 13355 A 4250 4245
330 France 13356 C 4249 4245
331 France 13357 A 4248 4243
332 France 13358 C 4248 4245
333 France 13359 T 4248 4244
334 France 13360 T 4248 4244
335 France 13361 A 4248 4244
336 France 13362 A 4248 4244
337 France 13363 A 4248 4244
338 France 13364 A 4248 4244
339 France 13365 A C 4248 4236 Asn4367Thr
340 France 13366 C 4248 4244
341 France 13367 A 4247 4238
342 France 13368 C 4247 4241
343 France 13369 A 4246 4240
344 France 13370 G 4246 4242
345 France 13371 T 4246 4242
346 France 13372 C 4246 4242
347 France 13373 T 4246 4242
348 France 13374 G 4246 4242
349 France 13375 T 4246 4242
350 France 13376 A 4246 4240
351 France 13377 C 4246 4242
352 France 13378 C 4238 4232
353 France 13379 G 4236 4231
354 France 13380 T 4234 4227
355 France 13381 C T 4233 4222 Val4372Val
356 France 13382 T 4231 4224
357 France 13383 G 4230 4222
358 France 13384 C 4230 4222
359 France 13385 G 4228 4220
360 France 13386 G 4227 4219
361 France 13387 T 4226 4219
362 France 13388 A 4226 4221
363 France 13389 T 4224 4218
364 France 13390 G 4224 4219
365 France 13391 T 4224 4219
366 France 13392 G 4224 4219
367 France 13393 G 4224 4217
368 France 13394 A G 4224 4218 Lys4377Glu
369 France 13395 A 4223 4218
370 France 13396 A 4223 4218
371 France 13397 G 4223 4219
372 France 13398 G 4222 4219
373 France 13399 T 4219 4215
374 France 13400 T 4218 4215
375 France 13401 A 4218 4215
376 France 13402 T 4218 4216
377 France 13403 G 4218 4217
378 France 13404 G 4218 4217
379 France 13405 C 4218 4218
380 France 13406 T 4213 4211
381 France 13407 G 4212 4209
382 France 13408 T 4212 4208
383 France 13409 A 4212 4210
384 France 13410 G 4212 4210
385 France 13411 T 4210 4207
386 France 13412 T 4209 4207
387 France 13413 G 4209 4208
388 France 13414 T 4204 4203
389 France 13415 G 4204 4203
390 France 13416 A 4203 4202
391 France 13417 T 4202 4200
392 France 13418 C 4201 4200
393 France 13419 A 4198 4197
394 France 13420 A 4198 4196
395 France 13421 C 4198 4196
396 France 13422 T 4196 4194
397 France 13423 C T 4196 4195 Leu4386Leu
398 France 13424 C 4195 4195
399 France 13425 G 4195 4195
400 France 13426 C T 4195 4193 Arg4387Arg
401 France 13427 G 4195 4194
402 France 13428 A 4195 4194
403 France 13429 A 4195 4195
404 France 13430 C 4195 4195
405 France 13431 C 4195 4195
406 France 13432 C T 4195 4194 Pro4389Pro
407 France 13433 A 4195 4195
408 France 13434 T 4195 4195
409 France 13435 G 4195 4195
410 France 13436 C 4195 4195
411 France 13437 T 4195 4195
412 France 13438 T 4195 4195
413 France 13439 C 4193 4193
414 France 13440 A 4193 4193
415 France 13441 G 4192 4192