National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                 1 1    
C   39                                        
D   21     1                                  
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24         1         1                    
M   12                                        
N   21                       1                
P   24                               1 1      
Q   18                                        
R   6                             1 1        
S   18                                        
T   39                                 1      
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Finland 13026 C 994 994
1 Finland 13027 T 994 994
2 Finland 13028 G 994 994
3 Finland 13029 G 994 994
4 Finland 13030 T 994 994
5 Finland 13031 A 994 994
6 Finland 13032 A 994 994
7 Finland 13033 T 994 994
8 Finland 13034 G 994 994
9 Finland 13035 C 994 994
10 Finland 13036 A 994 994
11 Finland 13037 A 994 994
12 Finland 13038 C 994 994
13 Finland 13039 A 994 994
14 Finland 13040 G 994 994
15 Finland 13041 A 994 994
16 Finland 13042 A 994 994
17 Finland 13043 G 994 994
18 Finland 13044 T 994 994
19 Finland 13045 G 994 994
20 Finland 13046 C 994 994
21 Finland 13047 C 994 994
22 Finland 13048 T 994 994
23 Finland 13049 G 994 994
24 Finland 13050 C 994 994
25 Finland 13051 C 994 994
26 Finland 13052 A 994 994
27 Finland 13053 A 994 994
28 Finland 13054 T 994 994
29 Finland 13055 T 994 994
30 Finland 13056 C 994 994
31 Finland 13057 A 994 994
32 Finland 13058 A 994 994
33 Finland 13059 C 994 994
34 Finland 13060 T 994 994
35 Finland 13061 G 994 994
36 Finland 13062 T 994 994
37 Finland 13063 A 994 994
38 Finland 13064 T 994 994
39 Finland 13065 T 994 994
40 Finland 13066 A 994 994
41 Finland 13067 T 994 994
42 Finland 13068 C 994 994
43 Finland 13069 T 994 994
44 Finland 13070 T 994 994
45 Finland 13071 T 994 994
46 Finland 13072 C 994 994
47 Finland 13073 T 994 994
48 Finland 13074 G 994 994
49 Finland 13075 T 994 994
50 Finland 13076 G 994 994
51 Finland 13077 C 994 994
52 Finland 13078 T 994 994
53 Finland 13079 T 994 994
54 Finland 13080 T 994 994
55 Finland 13081 T 994 994
56 Finland 13082 G 994 994
57 Finland 13083 C 994 994
58 Finland 13084 T 994 994
59 Finland 13085 G 994 994
60 Finland 13086 T 994 994
61 Finland 13087 A 994 994
62 Finland 13088 G 994 994
63 Finland 13089 A 994 994
64 Finland 13090 T 994 994
65 Finland 13091 G 994 994
66 Finland 13092 C 994 994
67 Finland 13093 T 994 994
68 Finland 13094 G A 994 993 Ala4277Thr
69 Finland 13095 C 994 994
70 Finland 13096 T 994 994
71 Finland 13097 A 994 994
72 Finland 13098 A 994 994
73 Finland 13099 A 994 994
74 Finland 13100 G 994 994
75 Finland 13101 C 994 994
76 Finland 13102 T 994 994
77 Finland 13103 T 994 994
78 Finland 13104 A 994 994
79 Finland 13105 C 994 994
80 Finland 13106 A 994 994
81 Finland 13107 A 994 994
82 Finland 13108 A 994 994
83 Finland 13109 G 994 994
84 Finland 13110 A 994 994
85 Finland 13111 T 994 994
86 Finland 13112 T 994 994
87 Finland 13113 A 994 994
88 Finland 13114 T 994 994
89 Finland 13115 C 994 994
90 Finland 13116 T 994 994
91 Finland 13117 A G 994 993 Leu4284Leu
92 Finland 13118 G 994 994
93 Finland 13119 C 994 994
94 Finland 13120 T 994 994
95 Finland 13121 A 994 994
96 Finland 13122 G 994 994
97 Finland 13123 T 994 994
98 Finland 13124 G 994 994
99 Finland 13125 G 994 994
100 Finland 13126 G 994 994
101 Finland 13127 G 994 994
102 Finland 13128 G 994 994
103 Finland 13129 A 994 994
104 Finland 13130 C 994 994
105 Finland 13131 A 994 994
106 Finland 13132 A 994 994
107 Finland 13133 C 994 994
108 Finland 13134 C 994 994
109 Finland 13135 A 994 994
110 Finland 13136 A 994 994
111 Finland 13137 T 994 994
112 Finland 13138 C 994 994
113 Finland 13139 A 994 994
114 Finland 13140 C 994 994
115 Finland 13141 T 994 994
116 Finland 13142 A 994 994
117 Finland 13143 A 994 994
118 Finland 13144 T 994 994
119 Finland 13145 T 994 994
120 Finland 13146 G 994 994
121 Finland 13147 T 994 994
122 Finland 13148 G 994 994
123 Finland 13149 T 994 994
124 Finland 13150 T 994 994
125 Finland 13151 A 994 994
126 Finland 13152 A 994 994
127 Finland 13153 G 994 994
128 Finland 13154 A 994 994
129 Finland 13155 T 994 994
130 Finland 13156 G 994 994
131 Finland 13157 T 994 994
132 Finland 13158 T 994 994
133 Finland 13159 G 994 994
134 Finland 13160 T 994 994
135 Finland 13161 G 994 994
136 Finland 13162 T 994 994
137 Finland 13163 A 994 994
138 Finland 13164 C 994 994
139 Finland 13165 A 994 994
140 Finland 13166 C 994 994
141 Finland 13167 A 994 994
142 Finland 13168 C 994 994
143 Finland 13169 A 994 994
144 Finland 13170 C 994 994
145 Finland 13171 T 994 994
146 Finland 13172 G 994 994
147 Finland 13173 G 994 994
148 Finland 13174 T 994 994
149 Finland 13175 A 994 994
150 Finland 13176 C 994 994
151 Finland 13177 T 994 994
152 Finland 13178 G 994 994
153 Finland 13179 G 994 994
154 Finland 13180 T 994 994
155 Finland 13181 C 994 994
156 Finland 13182 A 994 994
157 Finland 13183 G 994 994
158 Finland 13184 G 994 994
159 Finland 13185 C 994 994
160 Finland 13186 A 994 994
161 Finland 13187 A 994 994
162 Finland 13188 T 994 994
163 Finland 13189 A 994 994
164 Finland 13190 A 994 994
165 Finland 13191 C 994 994
166 Finland 13192 A 994 994
167 Finland 13193 G 994 994
168 Finland 13194 T 994 994
169 Finland 13195 T 994 994
170 Finland 13196 A 994 994
171 Finland 13197 C 994 994
172 Finland 13198 A 994 994
173 Finland 13199 C A 994 993 Pro4312Thr
174 Finland 13200 C 994 994
175 Finland 13201 G 994 994
176 Finland 13202 G 994 994
177 Finland 13203 A 994 994
178 Finland 13204 A 994 994
179 Finland 13205 G 994 994
180 Finland 13206 C 994 994
181 Finland 13207 C 994 994
182 Finland 13208 A 994 994
183 Finland 13209 A 994 994
184 Finland 13210 T 994 994
185 Finland 13211 A 994 994
186 Finland 13212 T 994 994
187 Finland 13213 G 994 994
188 Finland 13214 G 994 994
189 Finland 13215 A 994 994
190 Finland 13216 T 994 994
191 Finland 13217 C 994 994
192 Finland 13218 A 994 994
193 Finland 13219 A 994 994
194 Finland 13220 G 994 994
195 Finland 13221 A 994 994
196 Finland 13222 A 994 994
197 Finland 13223 T 994 994
198 Finland 13224 C 994 994
199 Finland 13225 C 994 994
200 Finland 13226 T 994 994
201 Finland 13227 T 994 994
202 Finland 13228 T 994 994
203 Finland 13229 G 994 994
204 Finland 13230 G 994 994
205 Finland 13231 T 994 994
206 Finland 13232 G 994 994
207 Finland 13233 G 994 994
208 Finland 13234 T 994 994
209 Finland 13235 G 994 994
210 Finland 13236 C 994 994
211 Finland 13237 A 994 994
212 Finland 13238 T 994 994
213 Finland 13239 C 994 994
214 Finland 13240 G 994 994
215 Finland 13241 T 994 994
216 Finland 13242 G 994 994
217 Finland 13243 T 994 994
218 Finland 13244 T 994 994
219 Finland 13245 G 994 994
220 Finland 13246 T 994 994
221 Finland 13247 C 994 994
222 Finland 13248 T 994 994
223 Finland 13249 G 994 994
224 Finland 13250 T 994 994
225 Finland 13251 A 994 994
226 Finland 13252 C 994 994
227 Finland 13253 T 994 994
228 Finland 13254 G 994 994
229 Finland 13255 C 994 994
230 Finland 13256 C 994 994
231 Finland 13257 G 994 994
232 Finland 13258 T 994 994
233 Finland 13259 T 994 994
234 Finland 13260 G 994 994
235 Finland 13261 C 994 994
236 Finland 13262 C 994 994
237 Finland 13263 A 994 994
238 Finland 13264 C 994 994
239 Finland 13265 A 994 994
240 Finland 13266 T 994 994
241 Finland 13267 A 994 994
242 Finland 13268 G 994 994
243 Finland 13269 A 994 994
244 Finland 13270 T 994 994
245 Finland 13271 C 994 994
246 Finland 13272 A 994 994
247 Finland 13273 T 994 994
248 Finland 13274 C 994 994
249 Finland 13275 C 994 994
250 Finland 13276 A 994 994
251 Finland 13277 A 994 994
252 Finland 13278 A 994 994
253 Finland 13279 T C 994 993 Asn4338Asn
254 Finland 13280 C 994 994
255 Finland 13281 C 994 994
256 Finland 13282 T 994 994
257 Finland 13283 A 994 994
258 Finland 13284 A 994 994
259 Finland 13285 A 994 994
260 Finland 13286 G 994 994
261 Finland 13287 G 994 994
262 Finland 13288 A 994 994
263 Finland 13289 T 994 994
264 Finland 13290 T 994 994
265 Finland 13291 T 994 994
266 Finland 13292 T 994 994
267 Finland 13293 G 994 994
268 Finland 13294 T 994 994
269 Finland 13295 G 994 994
270 Finland 13296 A 994 994
271 Finland 13297 C T 994 993 Asp4344Asp
272 Finland 13298 T 994 994
273 Finland 13299 T 994 994
274 Finland 13300 A 994 994
275 Finland 13301 A 994 994
276 Finland 13302 A 994 994
277 Finland 13303 A 994 994
278 Finland 13304 G 994 994
279 Finland 13305 G 994 994
280 Finland 13306 T 994 994
281 Finland 13307 A 994 994
282 Finland 13308 A 994 994
283 Finland 13309 G 994 994
284 Finland 13310 T 994 994
285 Finland 13311 A 994 994
286 Finland 13312 T 994 994
287 Finland 13313 G 994 994
288 Finland 13314 T 994 994
289 Finland 13315 A 994 994
290 Finland 13316 C 994 994
291 Finland 13317 A 994 994
292 Finland 13318 A 994 994
293 Finland 13319 A 994 994
294 Finland 13320 T 994 994
295 Finland 13321 A 994 994
296 Finland 13322 C 994 994
297 Finland 13323 C 994 994
298 Finland 13324 T 994 994
299 Finland 13325 A 994 994
300 Finland 13326 C 994 994
301 Finland 13327 A 994 994
302 Finland 13328 A 994 994
303 Finland 13329 C 994 994
304 Finland 13330 T 994 994
305 Finland 13331 T 994 994
306 Finland 13332 G 994 994
307 Finland 13333 T 994 994
308 Finland 13334 G 994 994
309 Finland 13335 C T 994 989 Ala4357Val
310 Finland 13336 T 994 994
311 Finland 13337 A 994 994
312 Finland 13338 A 994 994
313 Finland 13339 T 994 994
314 Finland 13340 G 994 994
315 Finland 13341 A 994 994
316 Finland 13342 C 994 994
317 Finland 13343 C 994 994
318 Finland 13344 C 994 994
319 Finland 13345 T 994 994
320 Finland 13346 G 994 994
321 Finland 13347 T 994 994
322 Finland 13348 G 994 994
323 Finland 13349 G 994 994
324 Finland 13350 G 994 994
325 Finland 13351 T 994 994
326 Finland 13352 T 994 994
327 Finland 13353 T 994 994
328 Finland 13354 T 994 994
329 Finland 13355 A 994 994
330 Finland 13356 C 994 994
331 Finland 13357 A T 994 993 Thr4364Thr
332 Finland 13358 C T 994 992 Leu4365Phe
333 Finland 13359 T 994 994
334 Finland 13360 T 994 994
335 Finland 13361 A 994 994
336 Finland 13362 A 994 994
337 Finland 13363 A 994 994
338 Finland 13364 A 994 994
339 Finland 13365 A 994 994
340 Finland 13366 C 994 994
341 Finland 13367 A 994 994
342 Finland 13368 C 994 994
343 Finland 13369 A 994 994
344 Finland 13370 G 994 994
345 Finland 13371 T 994 993
346 Finland 13372 C 994 993
347 Finland 13373 T 994 993
348 Finland 13374 G 994 993
349 Finland 13375 T 994 993
350 Finland 13376 A 994 993
351 Finland 13377 C 994 993
352 Finland 13378 C 994 993
353 Finland 13379 G 994 993
354 Finland 13380 T 994 993
355 Finland 13381 C 994 993
356 Finland 13382 T 994 993
357 Finland 13383 G 994 993
358 Finland 13384 C 994 993
359 Finland 13385 G 994 994
360 Finland 13386 G 994 994
361 Finland 13387 T 994 994
362 Finland 13388 A 994 994
363 Finland 13389 T 994 994
364 Finland 13390 G 994 994
365 Finland 13391 T 994 994
366 Finland 13392 G 994 994
367 Finland 13393 G 994 994
368 Finland 13394 A 994 994
369 Finland 13395 A 994 994
370 Finland 13396 A 994 994
371 Finland 13397 G 994 994
372 Finland 13398 G 994 994
373 Finland 13399 T 994 994
374 Finland 13400 T 994 994
375 Finland 13401 A 994 994
376 Finland 13402 T 994 994
377 Finland 13403 G 994 994
378 Finland 13404 G 994 994
379 Finland 13405 C 994 994
380 Finland 13406 T 994 994
381 Finland 13407 G 994 994
382 Finland 13408 T 994 994
383 Finland 13409 A 994 994
384 Finland 13410 G 994 994
385 Finland 13411 T 994 994
386 Finland 13412 T 994 994
387 Finland 13413 G 994 994
388 Finland 13414 T 994 994
389 Finland 13415 G 994 994
390 Finland 13416 A 994 994
391 Finland 13417 T 994 994
392 Finland 13418 C 994 994
393 Finland 13419 A 994 994
394 Finland 13420 A 994 994
395 Finland 13421 C 994 994
396 Finland 13422 T 994 994
397 Finland 13423 C 994 994
398 Finland 13424 C A 994 993 Arg4387Ser
399 Finland 13425 G 994 994
400 Finland 13426 C T 994 975 Arg4387Arg
401 Finland 13427 G 994 994
402 Finland 13428 A 994 994
403 Finland 13429 A 994 994
404 Finland 13430 C T 994 993 Pro4389Ser
405 Finland 13431 C 994 994
406 Finland 13432 C 994 994
407 Finland 13433 A 994 994
408 Finland 13434 T 994 994
409 Finland 13435 G 994 994
410 Finland 13436 C 994 994
411 Finland 13437 T 994 994
412 Finland 13438 T 994 994
413 Finland 13439 C 994 994
414 Finland 13440 A 994 994
415 Finland 13441 G 994 994