National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 El_Salvador 13026 C 6 6
1 El_Salvador 13027 T 6 6
2 El_Salvador 13028 G 6 6
3 El_Salvador 13029 G 6 6
4 El_Salvador 13030 T 6 6
5 El_Salvador 13031 A 6 6
6 El_Salvador 13032 A 6 6
7 El_Salvador 13033 T 6 6
8 El_Salvador 13034 G 6 6
9 El_Salvador 13035 C 6 6
10 El_Salvador 13036 A 6 6
11 El_Salvador 13037 A 6 6
12 El_Salvador 13038 C 6 6
13 El_Salvador 13039 A 6 6
14 El_Salvador 13040 G 6 6
15 El_Salvador 13041 A 6 6
16 El_Salvador 13042 A 6 6
17 El_Salvador 13043 G 6 6
18 El_Salvador 13044 T 6 6
19 El_Salvador 13045 G 6 6
20 El_Salvador 13046 C 6 6
21 El_Salvador 13047 C 6 6
22 El_Salvador 13048 T 6 6
23 El_Salvador 13049 G 6 6
24 El_Salvador 13050 C 6 6
25 El_Salvador 13051 C 6 6
26 El_Salvador 13052 A 6 6
27 El_Salvador 13053 A 6 6
28 El_Salvador 13054 T 6 6
29 El_Salvador 13055 T 6 6
30 El_Salvador 13056 C 6 6
31 El_Salvador 13057 A 6 6
32 El_Salvador 13058 A 6 6
33 El_Salvador 13059 C 6 6
34 El_Salvador 13060 T 6 6
35 El_Salvador 13061 G 6 6
36 El_Salvador 13062 T 6 6
37 El_Salvador 13063 A 6 6
38 El_Salvador 13064 T 6 6
39 El_Salvador 13065 T 6 6
40 El_Salvador 13066 A 6 6
41 El_Salvador 13067 T 6 6
42 El_Salvador 13068 C 6 6
43 El_Salvador 13069 T 6 6
44 El_Salvador 13070 T 6 6
45 El_Salvador 13071 T 6 6
46 El_Salvador 13072 C 6 6
47 El_Salvador 13073 T 6 6
48 El_Salvador 13074 G 6 6
49 El_Salvador 13075 T 6 6
50 El_Salvador 13076 G 6 6
51 El_Salvador 13077 C 6 6
52 El_Salvador 13078 T 6 6
53 El_Salvador 13079 T 6 6
54 El_Salvador 13080 T 6 6
55 El_Salvador 13081 T 6 6
56 El_Salvador 13082 G 6 6
57 El_Salvador 13083 C 6 6
58 El_Salvador 13084 T 6 6
59 El_Salvador 13085 G 6 6
60 El_Salvador 13086 T 6 6
61 El_Salvador 13087 A 6 6
62 El_Salvador 13088 G 6 6
63 El_Salvador 13089 A 6 6
64 El_Salvador 13090 T 6 6
65 El_Salvador 13091 G 6 6
66 El_Salvador 13092 C 6 6
67 El_Salvador 13093 T 6 6
68 El_Salvador 13094 G 6 6
69 El_Salvador 13095 C 6 6
70 El_Salvador 13096 T 6 6
71 El_Salvador 13097 A 6 6
72 El_Salvador 13098 A 6 6
73 El_Salvador 13099 A 6 6
74 El_Salvador 13100 G 6 6
75 El_Salvador 13101 C 6 6
76 El_Salvador 13102 T 6 6
77 El_Salvador 13103 T 6 6
78 El_Salvador 13104 A 6 6
79 El_Salvador 13105 C 6 6
80 El_Salvador 13106 A 6 6
81 El_Salvador 13107 A 6 6
82 El_Salvador 13108 A 6 6
83 El_Salvador 13109 G 6 6
84 El_Salvador 13110 A 6 6
85 El_Salvador 13111 T 6 6
86 El_Salvador 13112 T 6 6
87 El_Salvador 13113 A 6 6
88 El_Salvador 13114 T 6 6
89 El_Salvador 13115 C 6 6
90 El_Salvador 13116 T 6 6
91 El_Salvador 13117 A 6 6
92 El_Salvador 13118 G 6 6
93 El_Salvador 13119 C 6 6
94 El_Salvador 13120 T 6 6
95 El_Salvador 13121 A 6 6
96 El_Salvador 13122 G 6 6
97 El_Salvador 13123 T 6 6
98 El_Salvador 13124 G 6 6
99 El_Salvador 13125 G 6 6
100 El_Salvador 13126 G 6 6
101 El_Salvador 13127 G 6 6
102 El_Salvador 13128 G 6 6
103 El_Salvador 13129 A 6 6
104 El_Salvador 13130 C 6 6
105 El_Salvador 13131 A 6 6
106 El_Salvador 13132 A 6 6
107 El_Salvador 13133 C 6 6
108 El_Salvador 13134 C 6 6
109 El_Salvador 13135 A 6 6
110 El_Salvador 13136 A 6 6
111 El_Salvador 13137 T 6 6
112 El_Salvador 13138 C 6 6
113 El_Salvador 13139 A 6 6
114 El_Salvador 13140 C 6 6
115 El_Salvador 13141 T 6 6
116 El_Salvador 13142 A 6 6
117 El_Salvador 13143 A 6 6
118 El_Salvador 13144 T 6 6
119 El_Salvador 13145 T 6 6
120 El_Salvador 13146 G 6 6
121 El_Salvador 13147 T 6 6
122 El_Salvador 13148 G 6 6
123 El_Salvador 13149 T 6 6
124 El_Salvador 13150 T 6 6
125 El_Salvador 13151 A 6 6
126 El_Salvador 13152 A 6 6
127 El_Salvador 13153 G 6 6
128 El_Salvador 13154 A 6 6
129 El_Salvador 13155 T 6 6
130 El_Salvador 13156 G 6 6
131 El_Salvador 13157 T 6 6
132 El_Salvador 13158 T 6 6
133 El_Salvador 13159 G 6 6
134 El_Salvador 13160 T 6 6
135 El_Salvador 13161 G 6 6
136 El_Salvador 13162 T 6 6
137 El_Salvador 13163 A 6 6
138 El_Salvador 13164 C 6 6
139 El_Salvador 13165 A 6 6
140 El_Salvador 13166 C 6 6
141 El_Salvador 13167 A 6 6
142 El_Salvador 13168 C 6 6
143 El_Salvador 13169 A 6 6
144 El_Salvador 13170 C 6 6
145 El_Salvador 13171 T 6 6
146 El_Salvador 13172 G 6 6
147 El_Salvador 13173 G 6 6
148 El_Salvador 13174 T 6 6
149 El_Salvador 13175 A 6 6
150 El_Salvador 13176 C 6 6
151 El_Salvador 13177 T 6 6
152 El_Salvador 13178 G 6 6
153 El_Salvador 13179 G 6 6
154 El_Salvador 13180 T 6 6
155 El_Salvador 13181 C 6 6
156 El_Salvador 13182 A 6 6
157 El_Salvador 13183 G 6 6
158 El_Salvador 13184 G 6 6
159 El_Salvador 13185 C 6 6
160 El_Salvador 13186 A 6 6
161 El_Salvador 13187 A 6 6
162 El_Salvador 13188 T 6 6
163 El_Salvador 13189 A 6 6
164 El_Salvador 13190 A 6 6
165 El_Salvador 13191 C 6 6
166 El_Salvador 13192 A 6 6
167 El_Salvador 13193 G 6 6
168 El_Salvador 13194 T 6 6
169 El_Salvador 13195 T 6 6
170 El_Salvador 13196 A 6 6
171 El_Salvador 13197 C 6 6
172 El_Salvador 13198 A 6 6
173 El_Salvador 13199 C 6 6
174 El_Salvador 13200 C 6 6
175 El_Salvador 13201 G 6 6
176 El_Salvador 13202 G 6 6
177 El_Salvador 13203 A 6 6
178 El_Salvador 13204 A 6 6
179 El_Salvador 13205 G 6 6
180 El_Salvador 13206 C 6 6
181 El_Salvador 13207 C 6 6
182 El_Salvador 13208 A 6 6
183 El_Salvador 13209 A 6 6
184 El_Salvador 13210 T 6 6
185 El_Salvador 13211 A 6 6
186 El_Salvador 13212 T 6 6
187 El_Salvador 13213 G 6 6
188 El_Salvador 13214 G 6 6
189 El_Salvador 13215 A 6 6
190 El_Salvador 13216 T 6 6
191 El_Salvador 13217 C 6 6
192 El_Salvador 13218 A 6 6
193 El_Salvador 13219 A 6 6
194 El_Salvador 13220 G 6 6
195 El_Salvador 13221 A 6 6
196 El_Salvador 13222 A 6 6
197 El_Salvador 13223 T 6 6
198 El_Salvador 13224 C 6 6
199 El_Salvador 13225 C 6 6
200 El_Salvador 13226 T 6 6
201 El_Salvador 13227 T 6 6
202 El_Salvador 13228 T 6 6
203 El_Salvador 13229 G 6 6
204 El_Salvador 13230 G 6 6
205 El_Salvador 13231 T 6 6
206 El_Salvador 13232 G 6 6
207 El_Salvador 13233 G 6 6
208 El_Salvador 13234 T 6 6
209 El_Salvador 13235 G 6 6
210 El_Salvador 13236 C 6 6
211 El_Salvador 13237 A 6 6
212 El_Salvador 13238 T 6 6
213 El_Salvador 13239 C 6 6
214 El_Salvador 13240 G 6 6
215 El_Salvador 13241 T 6 6
216 El_Salvador 13242 G 6 6
217 El_Salvador 13243 T 6 6
218 El_Salvador 13244 T 6 6
219 El_Salvador 13245 G 6 6
220 El_Salvador 13246 T 6 6
221 El_Salvador 13247 C 6 6
222 El_Salvador 13248 T 6 6
223 El_Salvador 13249 G 6 6
224 El_Salvador 13250 T 6 6
225 El_Salvador 13251 A 6 6
226 El_Salvador 13252 C 6 6
227 El_Salvador 13253 T 6 6
228 El_Salvador 13254 G 6 6
229 El_Salvador 13255 C 6 6
230 El_Salvador 13256 C 6 6
231 El_Salvador 13257 G 6 6
232 El_Salvador 13258 T 6 6
233 El_Salvador 13259 T 6 6
234 El_Salvador 13260 G 6 6
235 El_Salvador 13261 C 6 6
236 El_Salvador 13262 C 6 6
237 El_Salvador 13263 A 6 6
238 El_Salvador 13264 C 6 6
239 El_Salvador 13265 A 6 6
240 El_Salvador 13266 T 6 6
241 El_Salvador 13267 A 6 6
242 El_Salvador 13268 G 6 6
243 El_Salvador 13269 A 6 6
244 El_Salvador 13270 T 6 6
245 El_Salvador 13271 C 6 6
246 El_Salvador 13272 A 6 6
247 El_Salvador 13273 T 6 6
248 El_Salvador 13274 C 6 6
249 El_Salvador 13275 C 6 6
250 El_Salvador 13276 A 6 6
251 El_Salvador 13277 A 6 6
252 El_Salvador 13278 A 6 6
253 El_Salvador 13279 T 6 6
254 El_Salvador 13280 C 6 6
255 El_Salvador 13281 C 6 6
256 El_Salvador 13282 T 6 6
257 El_Salvador 13283 A 6 6
258 El_Salvador 13284 A 6 6
259 El_Salvador 13285 A 6 6
260 El_Salvador 13286 G 6 6
261 El_Salvador 13287 G 6 6
262 El_Salvador 13288 A 6 6
263 El_Salvador 13289 T 6 6
264 El_Salvador 13290 T 6 6
265 El_Salvador 13291 T 6 6
266 El_Salvador 13292 T 6 6
267 El_Salvador 13293 G 6 6
268 El_Salvador 13294 T 6 6
269 El_Salvador 13295 G 6 6
270 El_Salvador 13296 A 6 6
271 El_Salvador 13297 C 6 6
272 El_Salvador 13298 T 6 6
273 El_Salvador 13299 T 6 6
274 El_Salvador 13300 A 6 6
275 El_Salvador 13301 A 6 6
276 El_Salvador 13302 A 6 6
277 El_Salvador 13303 A 6 6
278 El_Salvador 13304 G 6 6
279 El_Salvador 13305 G 6 6
280 El_Salvador 13306 T 6 6
281 El_Salvador 13307 A 6 6
282 El_Salvador 13308 A 6 6
283 El_Salvador 13309 G 6 6
284 El_Salvador 13310 T 6 6
285 El_Salvador 13311 A 6 6
286 El_Salvador 13312 T 6 6
287 El_Salvador 13313 G 6 6
288 El_Salvador 13314 T 6 6
289 El_Salvador 13315 A 6 6
290 El_Salvador 13316 C 6 6
291 El_Salvador 13317 A 6 6
292 El_Salvador 13318 A 6 6
293 El_Salvador 13319 A 6 6
294 El_Salvador 13320 T 6 6
295 El_Salvador 13321 A 6 6
296 El_Salvador 13322 C 6 6
297 El_Salvador 13323 C 6 6
298 El_Salvador 13324 T 6 6
299 El_Salvador 13325 A 6 6
300 El_Salvador 13326 C 6 6
301 El_Salvador 13327 A 6 6
302 El_Salvador 13328 A 6 6
303 El_Salvador 13329 C 6 6
304 El_Salvador 13330 T 6 6
305 El_Salvador 13331 T 6 6
306 El_Salvador 13332 G 6 6
307 El_Salvador 13333 T 6 6
308 El_Salvador 13334 G 6 6
309 El_Salvador 13335 C 6 6
310 El_Salvador 13336 T 6 6
311 El_Salvador 13337 A 6 6
312 El_Salvador 13338 A 6 6
313 El_Salvador 13339 T 6 6
314 El_Salvador 13340 G 6 6
315 El_Salvador 13341 A 6 6
316 El_Salvador 13342 C 6 6
317 El_Salvador 13343 C 6 6
318 El_Salvador 13344 C 6 6
319 El_Salvador 13345 T 6 6
320 El_Salvador 13346 G 6 6
321 El_Salvador 13347 T 6 6
322 El_Salvador 13348 G 6 6
323 El_Salvador 13349 G 6 6
324 El_Salvador 13350 G 6 6
325 El_Salvador 13351 T 6 6
326 El_Salvador 13352 T 6 6
327 El_Salvador 13353 T 6 6
328 El_Salvador 13354 T 6 6
329 El_Salvador 13355 A 6 6
330 El_Salvador 13356 C 6 6
331 El_Salvador 13357 A 6 6
332 El_Salvador 13358 C 6 6
333 El_Salvador 13359 T 6 6
334 El_Salvador 13360 T 6 6
335 El_Salvador 13361 A 6 6
336 El_Salvador 13362 A 6 6
337 El_Salvador 13363 A 6 6
338 El_Salvador 13364 A 6 6
339 El_Salvador 13365 A 6 6
340 El_Salvador 13366 C 6 6
341 El_Salvador 13367 A 6 6
342 El_Salvador 13368 C 6 6
343 El_Salvador 13369 A 6 6
344 El_Salvador 13370 G 6 6
345 El_Salvador 13371 T 6 6
346 El_Salvador 13372 C 6 6
347 El_Salvador 13373 T 6 6
348 El_Salvador 13374 G 6 6
349 El_Salvador 13375 T 6 6
350 El_Salvador 13376 A 6 6
351 El_Salvador 13377 C 6 6
352 El_Salvador 13378 C 6 6
353 El_Salvador 13379 G 6 6
354 El_Salvador 13380 T 6 6
355 El_Salvador 13381 C 6 6
356 El_Salvador 13382 T 6 6
357 El_Salvador 13383 G 6 6
358 El_Salvador 13384 C 6 6
359 El_Salvador 13385 G 6 6
360 El_Salvador 13386 G 6 6
361 El_Salvador 13387 T 6 6
362 El_Salvador 13388 A 6 6
363 El_Salvador 13389 T 6 6
364 El_Salvador 13390 G 6 6
365 El_Salvador 13391 T 6 6
366 El_Salvador 13392 G 6 6
367 El_Salvador 13393 G 6 6
368 El_Salvador 13394 A 6 6
369 El_Salvador 13395 A 6 6
370 El_Salvador 13396 A 6 6
371 El_Salvador 13397 G 6 6
372 El_Salvador 13398 G 6 6
373 El_Salvador 13399 T 6 6
374 El_Salvador 13400 T 6 6
375 El_Salvador 13401 A 6 6
376 El_Salvador 13402 T 6 6
377 El_Salvador 13403 G 6 6
378 El_Salvador 13404 G 6 6
379 El_Salvador 13405 C 6 6
380 El_Salvador 13406 T 6 6
381 El_Salvador 13407 G 6 6
382 El_Salvador 13408 T 6 6
383 El_Salvador 13409 A 6 6
384 El_Salvador 13410 G 6 6
385 El_Salvador 13411 T 6 6
386 El_Salvador 13412 T 6 6
387 El_Salvador 13413 G 6 6
388 El_Salvador 13414 T 6 6
389 El_Salvador 13415 G 6 6
390 El_Salvador 13416 A 6 6
391 El_Salvador 13417 T 6 6
392 El_Salvador 13418 C 6 6
393 El_Salvador 13419 A 6 6
394 El_Salvador 13420 A 6 6
395 El_Salvador 13421 C 6 6
396 El_Salvador 13422 T 6 6
397 El_Salvador 13423 C 6 6
398 El_Salvador 13424 C 6 6
399 El_Salvador 13425 G 6 6
400 El_Salvador 13426 C 6 6
401 El_Salvador 13427 G 6 6
402 El_Salvador 13428 A 6 6
403 El_Salvador 13429 A 6 6
404 El_Salvador 13430 C 6 6
405 El_Salvador 13431 C 6 6
406 El_Salvador 13432 C 6 6
407 El_Salvador 13433 A 6 6
408 El_Salvador 13434 T 6 6
409 El_Salvador 13435 G 6 6
410 El_Salvador 13436 C 6 6
411 El_Salvador 13437 T 6 6
412 El_Salvador 13438 T 6 6
413 El_Salvador 13439 C 6 6
414 El_Salvador 13440 A 6 6
415 El_Salvador 13441 G 6 6