National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                   1    
C   39                                        
D   21     1                                  
E   12                                        
F   15                                        
G   39           1                            
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6             1                          
S   18                               1        
T   39               1               1        
V   27                                   1    
W   3                                        
Y   15                                       2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Egypt 13026 C 366 366
1 Egypt 13027 T 366 366
2 Egypt 13028 G 366 366
3 Egypt 13029 G 366 366
4 Egypt 13030 T 366 366
5 Egypt 13031 A 366 366
6 Egypt 13032 A 366 366
7 Egypt 13033 T 366 366
8 Egypt 13034 G 366 366
9 Egypt 13035 C 366 366
10 Egypt 13036 A 366 366
11 Egypt 13037 A 366 366
12 Egypt 13038 C 366 366
13 Egypt 13039 A 366 366
14 Egypt 13040 G 366 366
15 Egypt 13041 A 366 366
16 Egypt 13042 A 366 366
17 Egypt 13043 G 366 366
18 Egypt 13044 T 366 366
19 Egypt 13045 G 366 366
20 Egypt 13046 C 366 366
21 Egypt 13047 C 366 366
22 Egypt 13048 T 366 366
23 Egypt 13049 G 366 366
24 Egypt 13050 C 366 366
25 Egypt 13051 C 366 366
26 Egypt 13052 A 366 366
27 Egypt 13053 A 366 366
28 Egypt 13054 T 366 366
29 Egypt 13055 T 366 366
30 Egypt 13056 C 366 366
31 Egypt 13057 A 366 366
32 Egypt 13058 A 366 366
33 Egypt 13059 C 366 366
34 Egypt 13060 T 366 366
35 Egypt 13061 G 366 366
36 Egypt 13062 T 366 366
37 Egypt 13063 A 366 366
38 Egypt 13064 T 366 366
39 Egypt 13065 T 366 366
40 Egypt 13066 A 366 366
41 Egypt 13067 T 366 366
42 Egypt 13068 C 366 366
43 Egypt 13069 T 366 366
44 Egypt 13070 T 366 366
45 Egypt 13071 T 366 366
46 Egypt 13072 C 366 366
47 Egypt 13073 T 366 366
48 Egypt 13074 G 366 366
49 Egypt 13075 T 366 366
50 Egypt 13076 G 366 366
51 Egypt 13077 C 366 366
52 Egypt 13078 T 366 366
53 Egypt 13079 T 366 366
54 Egypt 13080 T 366 366
55 Egypt 13081 T 366 366
56 Egypt 13082 G 366 366
57 Egypt 13083 C 366 366
58 Egypt 13084 T 366 366
59 Egypt 13085 G 366 366
60 Egypt 13086 T 366 366
61 Egypt 13087 A 366 366
62 Egypt 13088 G 366 366
63 Egypt 13089 A 366 366
64 Egypt 13090 T 366 365
65 Egypt 13091 G 366 366
66 Egypt 13092 C 366 366
67 Egypt 13093 T 366 366
68 Egypt 13094 G 366 366
69 Egypt 13095 C 366 366
70 Egypt 13096 T 366 366
71 Egypt 13097 A 366 366
72 Egypt 13098 A 366 366
73 Egypt 13099 A 366 366
74 Egypt 13100 G 366 366
75 Egypt 13101 C 366 366
76 Egypt 13102 T 366 366
77 Egypt 13103 T 366 366
78 Egypt 13104 A 366 366
79 Egypt 13105 C 366 366
80 Egypt 13106 A 366 366
81 Egypt 13107 A 366 366
82 Egypt 13108 A 366 366
83 Egypt 13109 G 366 366
84 Egypt 13110 A 366 366
85 Egypt 13111 T 366 366
86 Egypt 13112 T 366 366
87 Egypt 13113 A 366 366
88 Egypt 13114 T 366 366
89 Egypt 13115 C 366 366
90 Egypt 13116 T 366 366
91 Egypt 13117 A 366 366
92 Egypt 13118 G 366 366
93 Egypt 13119 C 366 366
94 Egypt 13120 T 366 366
95 Egypt 13121 A 366 366
96 Egypt 13122 G 366 366
97 Egypt 13123 T 366 366
98 Egypt 13124 G 366 366
99 Egypt 13125 G 366 366
100 Egypt 13126 G T 366 365 Gly4287Gly
101 Egypt 13127 G 366 366
102 Egypt 13128 G 366 366
103 Egypt 13129 A 366 366
104 Egypt 13130 C 366 366
105 Egypt 13131 A 366 366
106 Egypt 13132 A 366 366
107 Egypt 13133 C 366 366
108 Egypt 13134 C 366 366
109 Egypt 13135 A 366 366
110 Egypt 13136 A 366 366
111 Egypt 13137 T 366 366
112 Egypt 13138 C 366 366
113 Egypt 13139 A 366 366
114 Egypt 13140 C 366 366
115 Egypt 13141 T 366 366
116 Egypt 13142 A 366 366
117 Egypt 13143 A 366 366
118 Egypt 13144 T 366 366
119 Egypt 13145 T 366 366
120 Egypt 13146 G 366 366
121 Egypt 13147 T 366 366
122 Egypt 13148 G 366 366
123 Egypt 13149 T 366 366
124 Egypt 13150 T 366 366
125 Egypt 13151 A 366 366
126 Egypt 13152 A 366 366
127 Egypt 13153 G 366 366
128 Egypt 13154 A 366 366
129 Egypt 13155 T 366 366
130 Egypt 13156 G 366 366
131 Egypt 13157 T 366 366
132 Egypt 13158 T 366 366
133 Egypt 13159 G 366 366
134 Egypt 13160 T 366 366
135 Egypt 13161 G 366 366
136 Egypt 13162 T 366 366
137 Egypt 13163 A 366 366
138 Egypt 13164 C 366 366
139 Egypt 13165 A 366 366
140 Egypt 13166 C 366 366
141 Egypt 13167 A 366 366
142 Egypt 13168 C 366 366
143 Egypt 13169 A 366 366
144 Egypt 13170 C 366 365
145 Egypt 13171 T 366 366
146 Egypt 13172 G 366 366
147 Egypt 13173 G 366 366
148 Egypt 13174 T 366 366
149 Egypt 13175 A 366 366
150 Egypt 13176 C 366 366
151 Egypt 13177 T 366 366
152 Egypt 13178 G 366 366
153 Egypt 13179 G 366 366
154 Egypt 13180 T 366 366
155 Egypt 13181 C 366 366
156 Egypt 13182 A 366 366
157 Egypt 13183 G 366 366
158 Egypt 13184 G 366 366
159 Egypt 13185 C 366 366
160 Egypt 13186 A 366 366
161 Egypt 13187 A 366 366
162 Egypt 13188 T 366 366
163 Egypt 13189 A 366 366
164 Egypt 13190 A 366 366
165 Egypt 13191 C 366 366
166 Egypt 13192 A 366 366
167 Egypt 13193 G 366 366
168 Egypt 13194 T 366 366
169 Egypt 13195 T 366 366
170 Egypt 13196 A 366 366
171 Egypt 13197 C 366 366
172 Egypt 13198 A 366 366
173 Egypt 13199 C 366 366
174 Egypt 13200 C 366 366
175 Egypt 13201 G 366 366
176 Egypt 13202 G 366 366
177 Egypt 13203 A 366 366
178 Egypt 13204 A 366 366
179 Egypt 13205 G 366 366
180 Egypt 13206 C 366 366
181 Egypt 13207 C 366 366
182 Egypt 13208 A 366 366
183 Egypt 13209 A 366 366
184 Egypt 13210 T 366 366
185 Egypt 13211 A 366 366
186 Egypt 13212 T 366 366
187 Egypt 13213 G 366 366
188 Egypt 13214 G 366 366
189 Egypt 13215 A 366 366
190 Egypt 13216 T C 366 365 Asp4317Asp
191 Egypt 13217 C 366 365
192 Egypt 13218 A 366 366
193 Egypt 13219 A 366 366
194 Egypt 13220 G 366 366
195 Egypt 13221 A 366 366
196 Egypt 13222 A 366 366
197 Egypt 13223 T 366 366
198 Egypt 13224 C 366 366
199 Egypt 13225 C T 366 365 Ser4320Ser
200 Egypt 13226 T 366 366
201 Egypt 13227 T 366 366
202 Egypt 13228 T 366 366
203 Egypt 13229 G 366 366
204 Egypt 13230 G 366 366
205 Egypt 13231 T 366 366
206 Egypt 13232 G 366 366
207 Egypt 13233 G 366 366
208 Egypt 13234 T 366 366
209 Egypt 13235 G 366 366
210 Egypt 13236 C 366 366
211 Egypt 13237 A 366 366
212 Egypt 13238 T 366 366
213 Egypt 13239 C 366 366
214 Egypt 13240 G 366 366
215 Egypt 13241 T 366 366
216 Egypt 13242 G 366 366
217 Egypt 13243 T 366 366
218 Egypt 13244 T 366 366
219 Egypt 13245 G 366 366
220 Egypt 13246 T 366 366
221 Egypt 13247 C 366 366
222 Egypt 13248 T 366 366
223 Egypt 13249 G 366 366
224 Egypt 13250 T 366 366
225 Egypt 13251 A 366 366
226 Egypt 13252 C T 366 365 Tyr4329Tyr
227 Egypt 13253 T 366 366
228 Egypt 13254 G 366 366
229 Egypt 13255 C 366 366
230 Egypt 13256 C 366 366
231 Egypt 13257 G 366 366
232 Egypt 13258 T 366 366
233 Egypt 13259 T 366 366
234 Egypt 13260 G 366 366
235 Egypt 13261 C 366 366
236 Egypt 13262 C 366 366
237 Egypt 13263 A 366 366
238 Egypt 13264 C 366 366
239 Egypt 13265 A 366 366
240 Egypt 13266 T 366 366
241 Egypt 13267 A 366 366
242 Egypt 13268 G 366 366
243 Egypt 13269 A 366 366
244 Egypt 13270 T 366 366
245 Egypt 13271 C 366 366
246 Egypt 13272 A 366 366
247 Egypt 13273 T 366 366
248 Egypt 13274 C 366 365
249 Egypt 13275 C 366 366
250 Egypt 13276 A 366 366
251 Egypt 13277 A 366 366
252 Egypt 13278 A 366 366
253 Egypt 13279 T 366 366
254 Egypt 13280 C 366 366
255 Egypt 13281 C 366 366
256 Egypt 13282 T 366 366
257 Egypt 13283 A 366 366
258 Egypt 13284 A 366 366
259 Egypt 13285 A 366 366
260 Egypt 13286 G 366 366
261 Egypt 13287 G 366 366
262 Egypt 13288 A 366 366
263 Egypt 13289 T 366 366
264 Egypt 13290 T 366 366
265 Egypt 13291 T 366 366
266 Egypt 13292 T 366 366
267 Egypt 13293 G 366 366
268 Egypt 13294 T 366 366
269 Egypt 13295 G 366 366
270 Egypt 13296 A 366 366
271 Egypt 13297 C 366 366
272 Egypt 13298 T 366 366
273 Egypt 13299 T 366 366
274 Egypt 13300 A 366 366
275 Egypt 13301 A 366 366
276 Egypt 13302 A 366 366
277 Egypt 13303 A 366 366
278 Egypt 13304 G 366 366
279 Egypt 13305 G 366 366
280 Egypt 13306 T 366 366
281 Egypt 13307 A 366 366
282 Egypt 13308 A 366 366
283 Egypt 13309 G 366 366
284 Egypt 13310 T 366 366
285 Egypt 13311 A 366 366
286 Egypt 13312 T C 366 365 Tyr4349Tyr
287 Egypt 13313 G 366 366
288 Egypt 13314 T 366 366
289 Egypt 13315 A 366 366
290 Egypt 13316 C 366 366
291 Egypt 13317 A 366 366
292 Egypt 13318 A 366 366
293 Egypt 13319 A 366 366
294 Egypt 13320 T 366 366
295 Egypt 13321 A 366 366
296 Egypt 13322 C 366 366
297 Egypt 13323 C 366 366
298 Egypt 13324 T 366 366
299 Egypt 13325 A T 366 365 Thr4354Ser
300 Egypt 13326 C T 366 365 Thr4354Ile
301 Egypt 13327 A 366 366
302 Egypt 13328 A 366 366
303 Egypt 13329 C 366 366
304 Egypt 13330 T 366 366
305 Egypt 13331 T 366 366
306 Egypt 13332 G 366 366
307 Egypt 13333 T 366 366
308 Egypt 13334 G 366 366
309 Egypt 13335 C T 366 363 Ala4357Val
310 Egypt 13336 T 366 366
311 Egypt 13337 A 366 366
312 Egypt 13338 A 366 366
313 Egypt 13339 T 366 366
314 Egypt 13340 G 366 366
315 Egypt 13341 A 366 366
316 Egypt 13342 C 366 366
317 Egypt 13343 C 366 366
318 Egypt 13344 C 366 366
319 Egypt 13345 T 366 366
320 Egypt 13346 G 366 366
321 Egypt 13347 T 366 366
322 Egypt 13348 G T 366 363 Val4361Val
323 Egypt 13349 G 366 366
324 Egypt 13350 G 366 366
325 Egypt 13351 T 366 366
326 Egypt 13352 T 366 366
327 Egypt 13353 T 366 366
328 Egypt 13354 T 366 366
329 Egypt 13355 A 366 366
330 Egypt 13356 C 366 366
331 Egypt 13357 A 365 365
332 Egypt 13358 C 365 365
333 Egypt 13359 T 365 365
334 Egypt 13360 T 365 365
335 Egypt 13361 A 365 365
336 Egypt 13362 A 365 365
337 Egypt 13363 A 365 365
338 Egypt 13364 A 365 365
339 Egypt 13365 A 365 365
340 Egypt 13366 C 365 365
341 Egypt 13367 A 365 365
342 Egypt 13368 C 365 365
343 Egypt 13369 A 365 365
344 Egypt 13370 G 365 365
345 Egypt 13371 T 365 365
346 Egypt 13372 C 365 365
347 Egypt 13373 T 365 365
348 Egypt 13374 G 365 365
349 Egypt 13375 T 365 365
350 Egypt 13376 A 365 365
351 Egypt 13377 C 365 365
352 Egypt 13378 C 365 365
353 Egypt 13379 G 365 365
354 Egypt 13380 T 364 364
355 Egypt 13381 C 364 364
356 Egypt 13382 T 364 364
357 Egypt 13383 G 364 364
358 Egypt 13384 C 364 364
359 Egypt 13385 G 364 364
360 Egypt 13386 G 364 364
361 Egypt 13387 T 364 364
362 Egypt 13388 A 364 364
363 Egypt 13389 T 364 364
364 Egypt 13390 G 364 364
365 Egypt 13391 T 364 364
366 Egypt 13392 G 364 364
367 Egypt 13393 G 364 364
368 Egypt 13394 A 364 364
369 Egypt 13395 A 364 364
370 Egypt 13396 A 364 364
371 Egypt 13397 G 364 364
372 Egypt 13398 G 364 364
373 Egypt 13399 T 364 364
374 Egypt 13400 T 364 364
375 Egypt 13401 A 364 364
376 Egypt 13402 T 364 364
377 Egypt 13403 G 364 364
378 Egypt 13404 G 364 364
379 Egypt 13405 C 364 364
380 Egypt 13406 T 364 364
381 Egypt 13407 G 364 364
382 Egypt 13408 T 364 364
383 Egypt 13409 A 364 364
384 Egypt 13410 G 364 364
385 Egypt 13411 T 364 364
386 Egypt 13412 T 364 364
387 Egypt 13413 G 364 364
388 Egypt 13414 T 364 364
389 Egypt 13415 G 364 364
390 Egypt 13416 A 364 364
391 Egypt 13417 T 364 364
392 Egypt 13418 C 364 364
393 Egypt 13419 A 364 364
394 Egypt 13420 A 364 364
395 Egypt 13421 C 364 364
396 Egypt 13422 T 364 364
397 Egypt 13423 C 364 364
398 Egypt 13424 C 364 364
399 Egypt 13425 G A 364 363 Arg4387His
400 Egypt 13426 C 364 364
401 Egypt 13427 G 364 364
402 Egypt 13428 A 364 364
403 Egypt 13429 A 364 364
404 Egypt 13430 C 364 364
405 Egypt 13431 C 364 364
406 Egypt 13432 C 364 364
407 Egypt 13433 A 364 364
408 Egypt 13434 T 364 364
409 Egypt 13435 G 364 364
410 Egypt 13436 C 364 364
411 Egypt 13437 T 364 364
412 Egypt 13438 T 364 364
413 Egypt 13439 C 364 364
414 Egypt 13440 A 364 364
415 Egypt 13441 G 364 364