National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*                                              
-     416                                        
?                                              
A     38 4                             1   3    
C     39   4     1                     1        
D     21 2   4 2                                
E     12     1 1                                
F     15         1                              
G     39   1 1     1                   1        
H     9             3                         1
I     12               1                 1 1    
K 1   24                 3     1     1          
L     24         2         4                    
M     12               2                   1    
N     21     1                 4                
P     24                   2     5     4 1      
Q     18                           1            
R     6   1                         1 1        
S     18                               1 1      
T     39 1             10       1         4      
V     27               1                   6    
W     3                                        
Y 1   15         1   1                         2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Denmark 13026 C 33915 33915
1 Denmark 13027 T 33915 33915
2 Denmark 13028 G A 33915 33912 Gly4255Ser
3 Denmark 13029 G 33915 33915
4 Denmark 13030 T 33915 33915
5 Denmark 13031 A 33915 33915
6 Denmark 13032 A 33915 33915
7 Denmark 13033 T C 33915 33913 Asn4256Asn
8 Denmark 13034 G 33915 33914
9 Denmark 13035 C 33915 33914
10 Denmark 13036 A 33915 33914
11 Denmark 13037 A 33915 33914
12 Denmark 13038 C T 33915 33914 Thr4258Ile
13 Denmark 13039 A 33915 33915
14 Denmark 13040 G 33915 33915
15 Denmark 13041 A 33915 33915
16 Denmark 13042 A 33915 33915
17 Denmark 13043 G 33915 33915
18 Denmark 13044 T 33915 33915
19 Denmark 13045 G 33915 33915
20 Denmark 13046 C 33915 33915
21 Denmark 13047 C 33915 33915
22 Denmark 13048 T 33915 33915
23 Denmark 13049 G 33915 33915
24 Denmark 13050 C 33915 33915
25 Denmark 13051 C 33915 33915
26 Denmark 13052 A 33915 33915
27 Denmark 13053 A 33915 33915
28 Denmark 13054 T 33915 33915
29 Denmark 13055 T 33915 33915
30 Denmark 13056 C 33915 33915
31 Denmark 13057 A 33915 33915
32 Denmark 13058 A 33915 33914
33 Denmark 13059 C T 33915 33911 Thr4265Ile
34 Denmark 13060 T A 33915 33914 Thr4265Thr
35 Denmark 13061 G 33915 33915
36 Denmark 13062 T 33915 33914
37 Denmark 13063 A G 33915 33914 Val4266Val
38 Denmark 13064 T C 33915 33914 Leu4267Leu
39 Denmark 13065 T 33915 33915
40 Denmark 13066 A 33915 33915
41 Denmark 13067 T 33915 33915
42 Denmark 13068 C 33915 33913
43 Denmark 13069 T 33915 33915
44 Denmark 13070 T 33915 33915
45 Denmark 13071 T 33915 33914
46 Denmark 13072 C 33915 33915
47 Denmark 13073 T 33915 33915
48 Denmark 13074 G 33915 33915
49 Denmark 13075 T 33915 33915
50 Denmark 13076 G 33915 33915
51 Denmark 13077 C 33915 33915
52 Denmark 13078 T C 33915 33914 Ala4271Ala
53 Denmark 13079 T 33915 33915
54 Denmark 13080 T 33915 33915
55 Denmark 13081 T 33915 33915
56 Denmark 13082 G T 33915 33913 Ala4273Ser
57 Denmark 13083 C 33915 33914
58 Denmark 13084 T 33915 33915
59 Denmark 13085 G 33915 33915
60 Denmark 13086 T 33915 33915
61 Denmark 13087 A G 33915 33914 Val4274Val
62 Denmark 13088 G 33915 33915
63 Denmark 13089 A 33915 33915
64 Denmark 13090 T C 33915 33865 Asp4275Asp
65 Denmark 13091 G 33915 33915
66 Denmark 13092 C 33915 33915
67 Denmark 13093 T A 33915 33912 Ala4276Ala
68 Denmark 13094 G 33915 33915
69 Denmark 13095 C T 33915 33913 Ala4277Val
70 Denmark 13096 T C 33915 33887 Ala4277Ala
71 Denmark 13097 A 33915 33915
72 Denmark 13098 A 33915 33915
73 Denmark 13099 A 33915 33915
74 Denmark 13100 G 33915 33915
75 Denmark 13101 C 33915 33914
76 Denmark 13102 T 33915 33915
77 Denmark 13103 T 33915 33915
78 Denmark 13104 A 33915 33915
79 Denmark 13105 C 33915 33914
80 Denmark 13106 A 33915 33915
81 Denmark 13107 A 33915 33915
82 Denmark 13108 A 33915 33914
83 Denmark 13109 G 33915 33915
84 Denmark 13110 A 33915 33915
85 Denmark 13111 T 33915 33915
86 Denmark 13112 T 33915 33915
87 Denmark 13113 A 33915 33915
88 Denmark 13114 T 33915 33915
89 Denmark 13115 C T 33915 33913 Leu4284Leu
90 Denmark 13116 T 33915 33915
91 Denmark 13117 A 33915 33915
92 Denmark 13118 G 33915 33914
93 Denmark 13119 C T 33915 33913 Ala4285Val
94 Denmark 13120 T 33915 33915
95 Denmark 13121 A 33915 33915
96 Denmark 13122 G 33915 33915
97 Denmark 13123 T 33915 33913
98 Denmark 13124 G 33915 33914
99 Denmark 13125 G 33915 33915
100 Denmark 13126 G T 33915 33914 Gly4287Gly
101 Denmark 13127 G 33915 33915
102 Denmark 13128 G 33915 33915
103 Denmark 13129 A 33915 33915
104 Denmark 13130 C 33915 33915
105 Denmark 13131 A 33915 33915
106 Denmark 13132 A 33915 33915
107 Denmark 13133 C T 33915 33911 Pro4290Ser
108 Denmark 13134 C 33915 33915
109 Denmark 13135 A T 33915 33913 Pro4290Pro
110 Denmark 13136 A 33915 33914
111 Denmark 13137 T 33915 33914
112 Denmark 13138 C T 33915 33912 Ile4291Ile
113 Denmark 13139 A 33915 33915
114 Denmark 13140 C T 33915 33900 Thr4292Ile
115 Denmark 13141 T C 33915 33913 Thr4292Thr
116 Denmark 13142 A 33915 33914
117 Denmark 13143 A 33915 33914
118 Denmark 13144 T 33915 33915
119 Denmark 13145 T 33915 33915
120 Denmark 13146 G 33915 33915
121 Denmark 13147 T 33915 33915
122 Denmark 13148 G 33915 33914
123 Denmark 13149 T 33915 33915
124 Denmark 13150 T 33915 33915
125 Denmark 13151 A 33915 33915
126 Denmark 13152 A 33915 33915
127 Denmark 13153 G C 33915 33913 Lys4296Asn
128 Denmark 13154 A 33915 33915
129 Denmark 13155 T 33915 33915
130 Denmark 13156 G 33915 33915
131 Denmark 13157 T 33915 33915
132 Denmark 13158 T 33915 33915
133 Denmark 13159 G 33915 33915
134 Denmark 13160 T 33915 33915
135 Denmark 13161 G 33915 33915
136 Denmark 13162 T 33915 33912
137 Denmark 13163 A 33915 33913
138 Denmark 13164 C 33915 33913
139 Denmark 13165 A 33915 33915
140 Denmark 13166 C T 33915 33914 His4301Tyr
141 Denmark 13167 A 33915 33915
142 Denmark 13168 C T 33915 33914 His4301His
143 Denmark 13169 A 33915 33915
144 Denmark 13170 C T 33915 33913 Thr4302Ile
145 Denmark 13171 T 33915 33915
146 Denmark 13172 G 33915 33915
147 Denmark 13173 G 33915 33915
148 Denmark 13174 T 33915 33915
149 Denmark 13175 A 33915 33915
150 Denmark 13176 C T 33915 33883 Thr4304Ile
151 Denmark 13177 T 33915 33915
152 Denmark 13178 G 33915 33915
153 Denmark 13179 G 33915 33915
154 Denmark 13180 T 33915 33915
155 Denmark 13181 C 33915 33915
156 Denmark 13182 A 33915 33915
157 Denmark 13183 G A 33915 33913 Gln4306Gln
158 Denmark 13184 G 33915 33915
159 Denmark 13185 C 33915 33915
160 Denmark 13186 A 33915 33915
161 Denmark 13187 A 33915 33915
162 Denmark 13188 T 33915 33915
163 Denmark 13189 A 33915 33915
164 Denmark 13190 A 33915 33915
165 Denmark 13191 C 33915 33915
166 Denmark 13192 A 33915 33915
167 Denmark 13193 G 33915 33915
168 Denmark 13194 T 33915 33915
169 Denmark 13195 T 33915 33915
170 Denmark 13196 A 33915 33915
171 Denmark 13197 C T 33915 33350 Thr4311Ile
172 Denmark 13198 A 33915 33915
173 Denmark 13199 C 33915 33915
174 Denmark 13200 C 33915 33915
175 Denmark 13201 G T,A 33915 33845 Pro4312Pro-p.Pro4312Pro
176 Denmark 13202 G 33915 33915
177 Denmark 13203 A 33915 33915
178 Denmark 13204 A G 33915 33914 Glu4313Glu
179 Denmark 13205 G 33915 33915
180 Denmark 13206 C 33915 33915
181 Denmark 13207 C 33915 33915
182 Denmark 13208 A 33915 33915
183 Denmark 13209 A 33915 33915
184 Denmark 13210 T C 33915 33913 Asn4315Asn
185 Denmark 13211 A 33915 33915
186 Denmark 13212 T 33915 33915
187 Denmark 13213 G A 33915 33914 Met4316Ile
188 Denmark 13214 G 33915 33915
189 Denmark 13215 A 33915 33915
190 Denmark 13216 T G 33915 33913 Asp4317Glu
191 Denmark 13217 C 33915 33915
192 Denmark 13218 A 33915 33915
193 Denmark 13219 A 33915 33915
194 Denmark 13220 G 33915 33915
195 Denmark 13221 A 33915 33915
196 Denmark 13222 A C 33915 33913 Glu4319Asp
197 Denmark 13223 T 33915 33915
198 Denmark 13224 C 33915 33915
199 Denmark 13225 C T 33915 33914 Ser4320Ser
200 Denmark 13226 T 33915 33915
201 Denmark 13227 T 33915 33915
202 Denmark 13228 T 33915 33915
203 Denmark 13229 G 33915 33915
204 Denmark 13230 G 33915 33915
205 Denmark 13231 T 33915 33914
206 Denmark 13232 G 33915 33915
207 Denmark 13233 G 33915 33915
208 Denmark 13234 T 33915 33915
209 Denmark 13235 G 33915 33915
210 Denmark 13236 C 33915 33915
211 Denmark 13237 A 33915 33915
212 Denmark 13238 T 33915 33915
213 Denmark 13239 C 33915 33915
214 Denmark 13240 G 33915 33915
215 Denmark 13241 T 33915 33915
216 Denmark 13242 G 33915 33915
217 Denmark 13243 T 33915 33915
218 Denmark 13244 T 33915 33915
219 Denmark 13245 G 33915 33915
220 Denmark 13246 T 33915 33914
221 Denmark 13247 C 33915 33915
222 Denmark 13248 T 33915 33915
223 Denmark 13249 G T 33915 33912 Leu4328Leu
224 Denmark 13250 T C 33915 33913 Tyr4329His
225 Denmark 13251 A 33915 33914
226 Denmark 13252 C T 33915 33910 Tyr4329Tyr
227 Denmark 13253 T 33915 33915
228 Denmark 13254 G 33915 33914
229 Denmark 13255 C T 33915 33913 Cys4330Cys
230 Denmark 13256 C 33915 33914
231 Denmark 13257 G 33915 33914
232 Denmark 13258 T 33915 33914
233 Denmark 13259 T A 33915 33914 Cys4332Ser
234 Denmark 13260 G 33915 33914
235 Denmark 13261 C T 33915 33913 Cys4332Cys
236 Denmark 13262 C 33915 33915
237 Denmark 13263 A 33915 33915
238 Denmark 13264 C T 33915 33912 His4333His
239 Denmark 13265 A 33915 33915
240 Denmark 13266 T C 33915 33912 Ile4334Thr
241 Denmark 13267 A 33915 33915
242 Denmark 13268 G 33915 33915
243 Denmark 13269 A 33915 33915
244 Denmark 13270 T C 33915 33914 Asp4335Asp
245 Denmark 13271 C 33915 33915
246 Denmark 13272 A 33915 33915
247 Denmark 13273 T C 33915 33911 His4336His
248 Denmark 13274 C T 33915 33889 Pro4337Ser
249 Denmark 13275 C T 33915 33912 Pro4337Leu
250 Denmark 13276 A 33915 33915
251 Denmark 13277 A G 33915 33444 Asn4338Asp
252 Denmark 13278 A 33915 33915
253 Denmark 13279 T 33915 33913
254 Denmark 13280 C T 33915 33910 Pro4339Ser
255 Denmark 13281 C 33915 33915
256 Denmark 13282 T 33915 33915
257 Denmark 13283 A 33915 33915
258 Denmark 13284 A 33915 33915
259 Denmark 13285 A G 33915 33912 Lys4340Lys
260 Denmark 13286 G 33915 33915
261 Denmark 13287 G 33915 33915
262 Denmark 13288 A 33915 33914
263 Denmark 13289 T 33915 33915
264 Denmark 13290 T 33915 33915
265 Denmark 13291 T 33915 33915
266 Denmark 13292 T 33915 33915
267 Denmark 13293 G 33915 33915
268 Denmark 13294 T 33915 33915
269 Denmark 13295 G 33915 33915
270 Denmark 13296 A C 33915 33904 Asp4344Ala
271 Denmark 13297 C T 33915 33833 Asp4344Asp
272 Denmark 13298 T C 33915 33909 Leu4345Leu
273 Denmark 13299 T 33915 33913
274 Denmark 13300 A 33915 33915
275 Denmark 13301 A 33915 33915
276 Denmark 13302 A 33915 33915
277 Denmark 13303 A G 33915 33914 Lys4346Lys
278 Denmark 13304 G 33915 33915
279 Denmark 13305 G 33915 33915
280 Denmark 13306 T 33915 33915
281 Denmark 13307 A 33915 33915
282 Denmark 13308 A G 33915 33913 Lys4348Arg
283 Denmark 13309 G 33915 33915
284 Denmark 13310 T 33915 33915
285 Denmark 13311 A 33915 33915
286 Denmark 13312 T 33915 33915
287 Denmark 13313 G 33915 33915
288 Denmark 13314 T 33915 33915
289 Denmark 13315 A G 33915 33911 Val4350Val
290 Denmark 13316 C 33915 33913
291 Denmark 13317 A 33915 33915
292 Denmark 13318 A 33915 33915
293 Denmark 13319 A G 33915 33912 Ile4352Val
294 Denmark 13320 T 33915 33915
295 Denmark 13321 A 33915 33915
296 Denmark 13322 C A 33915 33913 Pro4353Thr
297 Denmark 13323 C 33915 33914
298 Denmark 13324 T 33915 33915
299 Denmark 13325 A 33915 33915
300 Denmark 13326 C 33915 33915
301 Denmark 13327 A 33915 33915
302 Denmark 13328 A 33915 33915
303 Denmark 13329 C T,A 33915 33898 Thr4355Ile-p.Thr4355Asn
304 Denmark 13330 T 33915 33915
305 Denmark 13331 T 33915 33915
306 Denmark 13332 G 33915 33915
307 Denmark 13333 T 33915 33915
308 Denmark 13334 G 33915 33914
309 Denmark 13335 C T 33915 33857 Ala4357Val
310 Denmark 13336 T C 33915 33913 Ala4357Ala
311 Denmark 13337 A 33915 33915
312 Denmark 13338 A 33915 33915
313 Denmark 13339 T C 33915 33904 Asn4358Asn
314 Denmark 13340 G 33915 33915
315 Denmark 13341 A 33915 33915
316 Denmark 13342 C 33915 33915
317 Denmark 13343 C 33915 33915
318 Denmark 13344 C 33915 33915
319 Denmark 13345 T C 33915 33901 Pro4360Pro
320 Denmark 13346 G 33915 33914
321 Denmark 13347 T 33915 33915
322 Denmark 13348 G T 33915 33914 Val4361Val
323 Denmark 13349 G 33915 33915
324 Denmark 13350 G 33915 33915
325 Denmark 13351 T 33915 33915
326 Denmark 13352 T 33915 33915
327 Denmark 13353 T 33915 33915
328 Denmark 13354 T C 33915 33914 Phe4363Phe
329 Denmark 13355 A 33915 33915
330 Denmark 13356 C T 33915 33908 Thr4364Ile
331 Denmark 13357 A 33915 33915
332 Denmark 13358 C 33915 33915
333 Denmark 13359 T 33915 33915
334 Denmark 13360 T 33915 33915
335 Denmark 13361 A 33915 33915
336 Denmark 13362 A 33915 33915
337 Denmark 13363 A 33915 33915
338 Denmark 13364 A 33915 33915
339 Denmark 13365 A 33915 33915
340 Denmark 13366 C T 33915 33911 Asn4367Asn
341 Denmark 13367 A 33915 33915
342 Denmark 13368 C T 33915 33914 Thr4368Ile
343 Denmark 13369 A 33915 33915
344 Denmark 13370 G 33915 33915
345 Denmark 13371 T 33915 33915
346 Denmark 13372 C T 33915 33903 Val4369Val
347 Denmark 13373 T 33915 33915
348 Denmark 13374 G 33915 33915
349 Denmark 13375 T C 33915 33914 Cys4370Cys
350 Denmark 13376 A G 33915 33914 Thr4371Ala
351 Denmark 13377 C T 33915 33914 Thr4371Ile
352 Denmark 13378 C T,A 33915 33913 Thr4371Thr-p.Thr4371Thr
353 Denmark 13379 G A 33914 33913 Val4372Ile
354 Denmark 13380 T 33914 33914
355 Denmark 13381 C T 33914 33895 Val4372Val
356 Denmark 13382 T 33914 33914
357 Denmark 13383 G 33914 33914
358 Denmark 13384 C T 33914 33778 Cys4373Cys
359 Denmark 13385 G T 33914 33909 Gly4374Cys
360 Denmark 13386 G A 33914 33912 Gly4374Asp
361 Denmark 13387 T 33914 33914
362 Denmark 13388 A G 33914 33913 Met4375Val
363 Denmark 13389 T 33914 33913
364 Denmark 13390 G 33914 33914
365 Denmark 13391 T 33914 33914
366 Denmark 13392 G 33914 33914
367 Denmark 13393 G 33914 33914
368 Denmark 13394 A T 33914 33912 Lys4377*
369 Denmark 13395 A 33914 33914
370 Denmark 13396 A G 33914 33913 Lys4377Lys
371 Denmark 13397 G 33914 33914
372 Denmark 13398 G 33914 33913
373 Denmark 13399 T 33914 33914
374 Denmark 13400 T 33914 33914
375 Denmark 13401 A T 33914 33911 Tyr4379Phe
376 Denmark 13402 T G,C 33914 33910 Tyr4379*-p.Tyr4379Tyr
377 Denmark 13403 G 33914 33914
378 Denmark 13404 G 33914 33913
379 Denmark 13405 C 33914 33914
380 Denmark 13406 T 33914 33914
381 Denmark 13407 G 33914 33914
382 Denmark 13408 T 33914 33914
383 Denmark 13409 A 33914 33914
384 Denmark 13410 G C 33914 33899 Ser4382Thr
385 Denmark 13411 T 33914 33914
386 Denmark 13412 T 33914 33914
387 Denmark 13413 G T 33914 33912 Cys4383Phe
388 Denmark 13414 T 33914 33914
389 Denmark 13415 G 33914 33914
390 Denmark 13416 A C 33914 33912 Asp4384Ala
391 Denmark 13417 T C,G 33914 33908 Asp4384Glu-p.Asp4384Asp
392 Denmark 13418 C 33914 33914
393 Denmark 13419 A 33914 33914
394 Denmark 13420 A 33914 33914
395 Denmark 13421 C T 33914 33899 Leu4386Phe
396 Denmark 13422 T 33914 33914
397 Denmark 13423 C 33914 33914
398 Denmark 13424 C T,A 33914 33906 Arg4387Cys-p.Arg4387Ser
399 Denmark 13425 G 33914 33914
400 Denmark 13426 C T 33914 33904 Arg4387Arg
401 Denmark 13427 G 33914 33914
402 Denmark 13428 A 33914 33914
403 Denmark 13429 A 33914 33914
404 Denmark 13430 C T 33914 33899 Pro4389Ser
405 Denmark 13431 C T 33914 33905 Pro4389Leu
406 Denmark 13432 C T 33914 33908 Pro4389Pro
407 Denmark 13433 A 33914 33914
408 Denmark 13434 T 33914 33914
409 Denmark 13435 G T 33914 33911 Met4390Ile
410 Denmark 13436 C T 33914 33912 Leu4391Phe
411 Denmark 13437 T 33914 33914
412 Denmark 13438 T 33914 33914
413 Denmark 13439 C 33914 33914
414 Denmark 13440 A 33914 33914
415 Denmark 13441 G 33913 33913