National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 1                             1        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39           1                            
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                         1     1        
Q   18                                        
R   6                                        
S   18                               1        
T   39 1             2                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Czech_Republic 13026 C 602 602
1 Czech_Republic 13027 T 602 602
2 Czech_Republic 13028 G 602 602
3 Czech_Republic 13029 G 602 602
4 Czech_Republic 13030 T 602 602
5 Czech_Republic 13031 A 602 602
6 Czech_Republic 13032 A 602 602
7 Czech_Republic 13033 T 602 602
8 Czech_Republic 13034 G 602 602
9 Czech_Republic 13035 C 602 602
10 Czech_Republic 13036 A 602 602
11 Czech_Republic 13037 A 602 602
12 Czech_Republic 13038 C 602 602
13 Czech_Republic 13039 A 602 602
14 Czech_Republic 13040 G 602 602
15 Czech_Republic 13041 A 602 602
16 Czech_Republic 13042 A 602 602
17 Czech_Republic 13043 G 602 602
18 Czech_Republic 13044 T 602 602
19 Czech_Republic 13045 G 602 602
20 Czech_Republic 13046 C 602 602
21 Czech_Republic 13047 C 602 602
22 Czech_Republic 13048 T 602 602
23 Czech_Republic 13049 G 602 602
24 Czech_Republic 13050 C 602 602
25 Czech_Republic 13051 C 602 602
26 Czech_Republic 13052 A 602 602
27 Czech_Republic 13053 A 602 602
28 Czech_Republic 13054 T 602 602
29 Czech_Republic 13055 T 602 602
30 Czech_Republic 13056 C 602 602
31 Czech_Republic 13057 A 602 602
32 Czech_Republic 13058 A 602 602
33 Czech_Republic 13059 C T 602 601 Thr4265Ile
34 Czech_Republic 13060 T 602 602
35 Czech_Republic 13061 G 602 602
36 Czech_Republic 13062 T 602 602
37 Czech_Republic 13063 A 602 602
38 Czech_Republic 13064 T 602 602
39 Czech_Republic 13065 T 602 602
40 Czech_Republic 13066 A 602 602
41 Czech_Republic 13067 T 602 602
42 Czech_Republic 13068 C 602 602
43 Czech_Republic 13069 T C 602 601 Ser4268Ser
44 Czech_Republic 13070 T 602 602
45 Czech_Republic 13071 T 602 602
46 Czech_Republic 13072 C 602 602
47 Czech_Republic 13073 T 602 602
48 Czech_Republic 13074 G 602 602
49 Czech_Republic 13075 T 602 602
50 Czech_Republic 13076 G 602 602
51 Czech_Republic 13077 C 602 602
52 Czech_Republic 13078 T 602 602
53 Czech_Republic 13079 T 602 602
54 Czech_Republic 13080 T 602 602
55 Czech_Republic 13081 T 602 602
56 Czech_Republic 13082 G 602 602
57 Czech_Republic 13083 C 602 602
58 Czech_Republic 13084 T 602 602
59 Czech_Republic 13085 G 602 602
60 Czech_Republic 13086 T 602 602
61 Czech_Republic 13087 A 602 602
62 Czech_Republic 13088 G 602 602
63 Czech_Republic 13089 A 602 602
64 Czech_Republic 13090 T 602 602
65 Czech_Republic 13091 G 602 602
66 Czech_Republic 13092 C 602 602
67 Czech_Republic 13093 T 602 602
68 Czech_Republic 13094 G 602 602
69 Czech_Republic 13095 C 602 602
70 Czech_Republic 13096 T 602 602
71 Czech_Republic 13097 A 602 602
72 Czech_Republic 13098 A 602 602
73 Czech_Republic 13099 A 602 602
74 Czech_Republic 13100 G 602 602
75 Czech_Republic 13101 C 602 602
76 Czech_Republic 13102 T C 602 600 Ala4279Ala
77 Czech_Republic 13103 T 602 602
78 Czech_Republic 13104 A 602 602
79 Czech_Republic 13105 C 602 602
80 Czech_Republic 13106 A 602 602
81 Czech_Republic 13107 A 602 602
82 Czech_Republic 13108 A 602 602
83 Czech_Republic 13109 G 602 602
84 Czech_Republic 13110 A 602 602
85 Czech_Republic 13111 T 602 602
86 Czech_Republic 13112 T 602 602
87 Czech_Republic 13113 A 602 602
88 Czech_Republic 13114 T 602 602
89 Czech_Republic 13115 C 602 601
90 Czech_Republic 13116 T 602 601
91 Czech_Republic 13117 A 602 602
92 Czech_Republic 13118 G 602 602
93 Czech_Republic 13119 C 602 602
94 Czech_Republic 13120 T 602 602
95 Czech_Republic 13121 A 602 602
96 Czech_Republic 13122 G 602 602
97 Czech_Republic 13123 T 602 602
98 Czech_Republic 13124 G 602 601
99 Czech_Republic 13125 G 602 602
100 Czech_Republic 13126 G 602 602
101 Czech_Republic 13127 G 602 602
102 Czech_Republic 13128 G 602 602
103 Czech_Republic 13129 A 602 602
104 Czech_Republic 13130 C 602 602
105 Czech_Republic 13131 A 602 602
106 Czech_Republic 13132 A 602 602
107 Czech_Republic 13133 C 602 602
108 Czech_Republic 13134 C 602 602
109 Czech_Republic 13135 A 602 602
110 Czech_Republic 13136 A 602 602
111 Czech_Republic 13137 T 602 602
112 Czech_Republic 13138 C 602 602
113 Czech_Republic 13139 A 602 602
114 Czech_Republic 13140 C 602 602
115 Czech_Republic 13141 T 602 602
116 Czech_Republic 13142 A 602 602
117 Czech_Republic 13143 A 602 602
118 Czech_Republic 13144 T 602 602
119 Czech_Republic 13145 T 602 602
120 Czech_Republic 13146 G 602 602
121 Czech_Republic 13147 T 602 602
122 Czech_Republic 13148 G 602 602
123 Czech_Republic 13149 T 602 602
124 Czech_Republic 13150 T 602 602
125 Czech_Republic 13151 A 602 602
126 Czech_Republic 13152 A 602 602
127 Czech_Republic 13153 G 602 602
128 Czech_Republic 13154 A 602 602
129 Czech_Republic 13155 T 602 602
130 Czech_Republic 13156 G 602 602
131 Czech_Republic 13157 T 602 602
132 Czech_Republic 13158 T 602 602
133 Czech_Republic 13159 G 602 602
134 Czech_Republic 13160 T 602 602
135 Czech_Republic 13161 G 602 602
136 Czech_Republic 13162 T 602 602
137 Czech_Republic 13163 A 602 602
138 Czech_Republic 13164 C 602 602
139 Czech_Republic 13165 A 602 602
140 Czech_Republic 13166 C 602 602
141 Czech_Republic 13167 A 602 602
142 Czech_Republic 13168 C 602 602
143 Czech_Republic 13169 A 602 602
144 Czech_Republic 13170 C 602 602
145 Czech_Republic 13171 T 602 602
146 Czech_Republic 13172 G 602 602
147 Czech_Republic 13173 G 602 602
148 Czech_Republic 13174 T 602 602
149 Czech_Republic 13175 A 602 602
150 Czech_Republic 13176 C 602 602
151 Czech_Republic 13177 T 602 602
152 Czech_Republic 13178 G 602 602
153 Czech_Republic 13179 G 602 602
154 Czech_Republic 13180 T C 602 601 Gly4305Gly
155 Czech_Republic 13181 C 602 602
156 Czech_Republic 13182 A 602 602
157 Czech_Republic 13183 G 602 602
158 Czech_Republic 13184 G 602 602
159 Czech_Republic 13185 C 602 602
160 Czech_Republic 13186 A 602 602
161 Czech_Republic 13187 A 602 602
162 Czech_Republic 13188 T 602 602
163 Czech_Republic 13189 A 602 602
164 Czech_Republic 13190 A G 602 601 Thr4309Ala
165 Czech_Republic 13191 C 602 602
166 Czech_Republic 13192 A 602 602
167 Czech_Republic 13193 G 602 602
168 Czech_Republic 13194 T 602 602
169 Czech_Republic 13195 T 602 602
170 Czech_Republic 13196 A 602 602
171 Czech_Republic 13197 C 602 602
172 Czech_Republic 13198 A 602 602
173 Czech_Republic 13199 C 602 602
174 Czech_Republic 13200 C 602 602
175 Czech_Republic 13201 G T 602 600 Pro4312Pro
176 Czech_Republic 13202 G 602 602
177 Czech_Republic 13203 A 602 602
178 Czech_Republic 13204 A 602 602
179 Czech_Republic 13205 G T 602 601 Ala4314Ser
180 Czech_Republic 13206 C 602 602
181 Czech_Republic 13207 C 602 602
182 Czech_Republic 13208 A 602 602
183 Czech_Republic 13209 A 602 602
184 Czech_Republic 13210 T 602 602
185 Czech_Republic 13211 A 602 602
186 Czech_Republic 13212 T 602 602
187 Czech_Republic 13213 G 602 602
188 Czech_Republic 13214 G 602 602
189 Czech_Republic 13215 A 602 602
190 Czech_Republic 13216 T 602 602
191 Czech_Republic 13217 C 602 602
192 Czech_Republic 13218 A 602 602
193 Czech_Republic 13219 A 602 602
194 Czech_Republic 13220 G 602 602
195 Czech_Republic 13221 A 602 602
196 Czech_Republic 13222 A 602 602
197 Czech_Republic 13223 T 602 602
198 Czech_Republic 13224 C 602 602
199 Czech_Republic 13225 C 602 602
200 Czech_Republic 13226 T 602 602
201 Czech_Republic 13227 T 602 602
202 Czech_Republic 13228 T 602 602
203 Czech_Republic 13229 G 602 602
204 Czech_Republic 13230 G 602 602
205 Czech_Republic 13231 T 602 602
206 Czech_Republic 13232 G 602 602
207 Czech_Republic 13233 G 602 602
208 Czech_Republic 13234 T 602 602
209 Czech_Republic 13235 G 602 602
210 Czech_Republic 13236 C 602 602
211 Czech_Republic 13237 A 602 602
212 Czech_Republic 13238 T 602 602
213 Czech_Republic 13239 C 602 602
214 Czech_Republic 13240 G 602 602
215 Czech_Republic 13241 T 602 602
216 Czech_Republic 13242 G 602 602
217 Czech_Republic 13243 T 602 602
218 Czech_Republic 13244 T 602 602
219 Czech_Republic 13245 G 602 601
220 Czech_Republic 13246 T 602 601
221 Czech_Republic 13247 C 602 601
222 Czech_Republic 13248 T 602 601
223 Czech_Republic 13249 G 602 601
224 Czech_Republic 13250 T 602 601
225 Czech_Republic 13251 A 602 601
226 Czech_Republic 13252 C 602 601
227 Czech_Republic 13253 T 602 601
228 Czech_Republic 13254 G 602 601
229 Czech_Republic 13255 C 602 601
230 Czech_Republic 13256 C 602 601
231 Czech_Republic 13257 G 602 601
232 Czech_Republic 13258 T 602 601
233 Czech_Republic 13259 T 602 601
234 Czech_Republic 13260 G 602 601
235 Czech_Republic 13261 C 602 601
236 Czech_Republic 13262 C 602 602
237 Czech_Republic 13263 A 602 601
238 Czech_Republic 13264 C 602 601
239 Czech_Republic 13265 A 602 602
240 Czech_Republic 13266 T 602 602
241 Czech_Republic 13267 A 602 602
242 Czech_Republic 13268 G 602 602
243 Czech_Republic 13269 A 602 602
244 Czech_Republic 13270 T 602 601
245 Czech_Republic 13271 C 602 601
246 Czech_Republic 13272 A 602 601
247 Czech_Republic 13273 T 602 601
248 Czech_Republic 13274 C 602 601
249 Czech_Republic 13275 C 602 602
250 Czech_Republic 13276 A 602 601
251 Czech_Republic 13277 A 602 601
252 Czech_Republic 13278 A 602 602
253 Czech_Republic 13279 T 602 602
254 Czech_Republic 13280 C 602 602
255 Czech_Republic 13281 C 602 602
256 Czech_Republic 13282 T 602 602
257 Czech_Republic 13283 A 602 602
258 Czech_Republic 13284 A 602 602
259 Czech_Republic 13285 A 602 602
260 Czech_Republic 13286 G 602 602
261 Czech_Republic 13287 G 602 602
262 Czech_Republic 13288 A 602 602
263 Czech_Republic 13289 T 602 602
264 Czech_Republic 13290 T 602 602
265 Czech_Republic 13291 T 602 602
266 Czech_Republic 13292 T 602 602
267 Czech_Republic 13293 G 602 602
268 Czech_Republic 13294 T 602 602
269 Czech_Republic 13295 G 602 602
270 Czech_Republic 13296 A 602 602
271 Czech_Republic 13297 C 602 602
272 Czech_Republic 13298 T 602 602
273 Czech_Republic 13299 T 602 602
274 Czech_Republic 13300 A 602 602
275 Czech_Republic 13301 A 602 602
276 Czech_Republic 13302 A 602 602
277 Czech_Republic 13303 A 602 602
278 Czech_Republic 13304 G 602 602
279 Czech_Republic 13305 G 602 602
280 Czech_Republic 13306 T 602 602
281 Czech_Republic 13307 A 602 602
282 Czech_Republic 13308 A 602 602
283 Czech_Republic 13309 G 602 602
284 Czech_Republic 13310 T 602 602
285 Czech_Republic 13311 A 602 602
286 Czech_Republic 13312 T 602 602
287 Czech_Republic 13313 G 602 602
288 Czech_Republic 13314 T 602 602
289 Czech_Republic 13315 A 602 602
290 Czech_Republic 13316 C 602 602
291 Czech_Republic 13317 A 602 602
292 Czech_Republic 13318 A 602 602
293 Czech_Republic 13319 A 602 602
294 Czech_Republic 13320 T 602 602
295 Czech_Republic 13321 A 602 602
296 Czech_Republic 13322 C 602 602
297 Czech_Republic 13323 C 602 602
298 Czech_Republic 13324 T 602 602
299 Czech_Republic 13325 A 602 602
300 Czech_Republic 13326 C 602 602
301 Czech_Republic 13327 A 602 602
302 Czech_Republic 13328 A 602 602
303 Czech_Republic 13329 C 602 602
304 Czech_Republic 13330 T 602 602
305 Czech_Republic 13331 T 602 602
306 Czech_Republic 13332 G 602 602
307 Czech_Republic 13333 T 602 602
308 Czech_Republic 13334 G 602 602
309 Czech_Republic 13335 C 602 602
310 Czech_Republic 13336 T 602 602
311 Czech_Republic 13337 A 602 601
312 Czech_Republic 13338 A 602 601
313 Czech_Republic 13339 T 602 601
314 Czech_Republic 13340 G 602 601
315 Czech_Republic 13341 A 602 601
316 Czech_Republic 13342 C 602 601
317 Czech_Republic 13343 C 602 601
318 Czech_Republic 13344 C 602 601
319 Czech_Republic 13345 T 602 601
320 Czech_Republic 13346 G 602 601
321 Czech_Republic 13347 T 602 601
322 Czech_Republic 13348 G 602 601
323 Czech_Republic 13349 G 602 601
324 Czech_Republic 13350 G 602 601
325 Czech_Republic 13351 T 602 601
326 Czech_Republic 13352 T 602 601
327 Czech_Republic 13353 T 602 601
328 Czech_Republic 13354 T 602 601
329 Czech_Republic 13355 A 602 601
330 Czech_Republic 13356 C 602 601
331 Czech_Republic 13357 A 602 601
332 Czech_Republic 13358 C 602 601
333 Czech_Republic 13359 T 602 601
334 Czech_Republic 13360 T 602 601
335 Czech_Republic 13361 A 602 602
336 Czech_Republic 13362 A 602 602
337 Czech_Republic 13363 A 602 602
338 Czech_Republic 13364 A 602 602
339 Czech_Republic 13365 A 602 602
340 Czech_Republic 13366 C 602 602
341 Czech_Republic 13367 A 602 602
342 Czech_Republic 13368 C 602 602
343 Czech_Republic 13369 A 602 602
344 Czech_Republic 13370 G 602 602
345 Czech_Republic 13371 T 602 602
346 Czech_Republic 13372 C 602 602
347 Czech_Republic 13373 T 602 602
348 Czech_Republic 13374 G 602 602
349 Czech_Republic 13375 T 602 602
350 Czech_Republic 13376 A 602 602
351 Czech_Republic 13377 C T 602 601 Thr4371Ile
352 Czech_Republic 13378 C 602 602
353 Czech_Republic 13379 G 602 602
354 Czech_Republic 13380 T 602 602
355 Czech_Republic 13381 C 602 602
356 Czech_Republic 13382 T 602 602
357 Czech_Republic 13383 G 602 602
358 Czech_Republic 13384 C 602 602
359 Czech_Republic 13385 G 602 602
360 Czech_Republic 13386 G 602 602
361 Czech_Republic 13387 T 602 602
362 Czech_Republic 13388 A 602 602
363 Czech_Republic 13389 T 602 602
364 Czech_Republic 13390 G 602 602
365 Czech_Republic 13391 T 602 602
366 Czech_Republic 13392 G 602 602
367 Czech_Republic 13393 G 602 602
368 Czech_Republic 13394 A 602 602
369 Czech_Republic 13395 A 602 602
370 Czech_Republic 13396 A 602 602
371 Czech_Republic 13397 G 602 602
372 Czech_Republic 13398 G 602 602
373 Czech_Republic 13399 T 602 602
374 Czech_Republic 13400 T 602 602
375 Czech_Republic 13401 A 602 602
376 Czech_Republic 13402 T 602 602
377 Czech_Republic 13403 G 602 602
378 Czech_Republic 13404 G 602 602
379 Czech_Republic 13405 C 602 602
380 Czech_Republic 13406 T 602 602
381 Czech_Republic 13407 G 602 602
382 Czech_Republic 13408 T 602 602
383 Czech_Republic 13409 A 602 602
384 Czech_Republic 13410 G 602 602
385 Czech_Republic 13411 T 602 602
386 Czech_Republic 13412 T 602 602
387 Czech_Republic 13413 G 602 602
388 Czech_Republic 13414 T 602 602
389 Czech_Republic 13415 G 602 602
390 Czech_Republic 13416 A 602 602
391 Czech_Republic 13417 T 602 602
392 Czech_Republic 13418 C 602 602
393 Czech_Republic 13419 A 602 602
394 Czech_Republic 13420 A 602 602
395 Czech_Republic 13421 C 602 602
396 Czech_Republic 13422 T 602 602
397 Czech_Republic 13423 C 602 602
398 Czech_Republic 13424 C 602 602
399 Czech_Republic 13425 G 602 602
400 Czech_Republic 13426 C 602 602
401 Czech_Republic 13427 G 602 602
402 Czech_Republic 13428 A 602 602
403 Czech_Republic 13429 A 602 602
404 Czech_Republic 13430 C T 602 600 Pro4389Ser
405 Czech_Republic 13431 C 602 602
406 Czech_Republic 13432 C 602 602
407 Czech_Republic 13433 A 602 602
408 Czech_Republic 13434 T 602 602
409 Czech_Republic 13435 G 602 602
410 Czech_Republic 13436 C 602 602
411 Czech_Republic 13437 T 602 602
412 Czech_Republic 13438 T 602 602
413 Czech_Republic 13439 C 602 602
414 Czech_Republic 13440 A 602 602
415 Czech_Republic 13441 G 602 602