National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cyprus 13026 C 8 8
1 Cyprus 13027 T 8 8
2 Cyprus 13028 G 8 8
3 Cyprus 13029 G 8 8
4 Cyprus 13030 T 8 8
5 Cyprus 13031 A 8 8
6 Cyprus 13032 A 8 8
7 Cyprus 13033 T 8 8
8 Cyprus 13034 G 8 8
9 Cyprus 13035 C 8 8
10 Cyprus 13036 A 8 8
11 Cyprus 13037 A 8 8
12 Cyprus 13038 C 8 8
13 Cyprus 13039 A 8 8
14 Cyprus 13040 G 8 8
15 Cyprus 13041 A 8 8
16 Cyprus 13042 A 8 8
17 Cyprus 13043 G 8 8
18 Cyprus 13044 T 8 8
19 Cyprus 13045 G 8 8
20 Cyprus 13046 C 8 8
21 Cyprus 13047 C 8 8
22 Cyprus 13048 T 8 8
23 Cyprus 13049 G 8 8
24 Cyprus 13050 C 8 8
25 Cyprus 13051 C 8 8
26 Cyprus 13052 A 8 8
27 Cyprus 13053 A 8 8
28 Cyprus 13054 T 8 8
29 Cyprus 13055 T 8 8
30 Cyprus 13056 C 8 8
31 Cyprus 13057 A 8 8
32 Cyprus 13058 A 8 8
33 Cyprus 13059 C 8 8
34 Cyprus 13060 T 8 8
35 Cyprus 13061 G 8 8
36 Cyprus 13062 T 8 8
37 Cyprus 13063 A 8 8
38 Cyprus 13064 T 8 8
39 Cyprus 13065 T 8 8
40 Cyprus 13066 A 8 8
41 Cyprus 13067 T 8 8
42 Cyprus 13068 C 8 8
43 Cyprus 13069 T 8 8
44 Cyprus 13070 T 8 8
45 Cyprus 13071 T 8 8
46 Cyprus 13072 C 8 8
47 Cyprus 13073 T 8 8
48 Cyprus 13074 G 8 8
49 Cyprus 13075 T 8 8
50 Cyprus 13076 G 8 8
51 Cyprus 13077 C 8 8
52 Cyprus 13078 T 8 8
53 Cyprus 13079 T 8 8
54 Cyprus 13080 T 8 8
55 Cyprus 13081 T 8 8
56 Cyprus 13082 G 8 8
57 Cyprus 13083 C 8 8
58 Cyprus 13084 T 8 8
59 Cyprus 13085 G 8 8
60 Cyprus 13086 T 8 8
61 Cyprus 13087 A 8 8
62 Cyprus 13088 G 8 8
63 Cyprus 13089 A 8 8
64 Cyprus 13090 T 8 8
65 Cyprus 13091 G 8 8
66 Cyprus 13092 C 8 8
67 Cyprus 13093 T 8 8
68 Cyprus 13094 G 8 8
69 Cyprus 13095 C 8 8
70 Cyprus 13096 T 8 8
71 Cyprus 13097 A 8 8
72 Cyprus 13098 A 8 8
73 Cyprus 13099 A 8 8
74 Cyprus 13100 G 8 8
75 Cyprus 13101 C 8 8
76 Cyprus 13102 T 8 8
77 Cyprus 13103 T 8 8
78 Cyprus 13104 A 8 8
79 Cyprus 13105 C 8 8
80 Cyprus 13106 A 8 8
81 Cyprus 13107 A 8 8
82 Cyprus 13108 A 8 8
83 Cyprus 13109 G 8 8
84 Cyprus 13110 A 8 8
85 Cyprus 13111 T 8 8
86 Cyprus 13112 T 8 8
87 Cyprus 13113 A 8 8
88 Cyprus 13114 T 8 8
89 Cyprus 13115 C 8 8
90 Cyprus 13116 T 8 8
91 Cyprus 13117 A 8 8
92 Cyprus 13118 G 8 8
93 Cyprus 13119 C 8 8
94 Cyprus 13120 T 8 8
95 Cyprus 13121 A 8 8
96 Cyprus 13122 G 8 8
97 Cyprus 13123 T 8 8
98 Cyprus 13124 G 8 8
99 Cyprus 13125 G 8 8
100 Cyprus 13126 G 8 8
101 Cyprus 13127 G 8 8
102 Cyprus 13128 G 8 8
103 Cyprus 13129 A 8 8
104 Cyprus 13130 C 8 8
105 Cyprus 13131 A 8 8
106 Cyprus 13132 A 8 8
107 Cyprus 13133 C 8 8
108 Cyprus 13134 C 8 8
109 Cyprus 13135 A 8 8
110 Cyprus 13136 A 8 8
111 Cyprus 13137 T 8 8
112 Cyprus 13138 C 8 8
113 Cyprus 13139 A 8 8
114 Cyprus 13140 C 8 8
115 Cyprus 13141 T 8 8
116 Cyprus 13142 A 8 8
117 Cyprus 13143 A 8 8
118 Cyprus 13144 T 8 8
119 Cyprus 13145 T 8 8
120 Cyprus 13146 G 8 8
121 Cyprus 13147 T 8 8
122 Cyprus 13148 G 8 8
123 Cyprus 13149 T 8 8
124 Cyprus 13150 T 8 8
125 Cyprus 13151 A 8 8
126 Cyprus 13152 A 8 8
127 Cyprus 13153 G 8 8
128 Cyprus 13154 A 8 8
129 Cyprus 13155 T 8 8
130 Cyprus 13156 G 8 8
131 Cyprus 13157 T 8 8
132 Cyprus 13158 T 8 8
133 Cyprus 13159 G 8 8
134 Cyprus 13160 T 8 8
135 Cyprus 13161 G 8 8
136 Cyprus 13162 T 8 8
137 Cyprus 13163 A 8 8
138 Cyprus 13164 C 8 8
139 Cyprus 13165 A 8 8
140 Cyprus 13166 C 8 8
141 Cyprus 13167 A 8 8
142 Cyprus 13168 C 8 8
143 Cyprus 13169 A 8 8
144 Cyprus 13170 C 8 8
145 Cyprus 13171 T 8 8
146 Cyprus 13172 G 8 8
147 Cyprus 13173 G 8 8
148 Cyprus 13174 T 8 8
149 Cyprus 13175 A 8 8
150 Cyprus 13176 C 8 8
151 Cyprus 13177 T 8 8
152 Cyprus 13178 G 8 8
153 Cyprus 13179 G 8 8
154 Cyprus 13180 T 8 8
155 Cyprus 13181 C 8 8
156 Cyprus 13182 A 8 8
157 Cyprus 13183 G 8 8
158 Cyprus 13184 G 8 8
159 Cyprus 13185 C 8 8
160 Cyprus 13186 A 8 8
161 Cyprus 13187 A 8 8
162 Cyprus 13188 T 8 8
163 Cyprus 13189 A 8 8
164 Cyprus 13190 A 8 8
165 Cyprus 13191 C 8 8
166 Cyprus 13192 A 8 8
167 Cyprus 13193 G 8 8
168 Cyprus 13194 T 8 8
169 Cyprus 13195 T 8 8
170 Cyprus 13196 A 8 8
171 Cyprus 13197 C 8 8
172 Cyprus 13198 A 8 8
173 Cyprus 13199 C 8 8
174 Cyprus 13200 C 8 8
175 Cyprus 13201 G 8 8
176 Cyprus 13202 G 8 8
177 Cyprus 13203 A 8 8
178 Cyprus 13204 A 8 8
179 Cyprus 13205 G 8 8
180 Cyprus 13206 C 8 8
181 Cyprus 13207 C 8 8
182 Cyprus 13208 A 8 8
183 Cyprus 13209 A 8 8
184 Cyprus 13210 T 8 8
185 Cyprus 13211 A 8 8
186 Cyprus 13212 T 8 8
187 Cyprus 13213 G 8 8
188 Cyprus 13214 G 8 8
189 Cyprus 13215 A 8 8
190 Cyprus 13216 T 8 8
191 Cyprus 13217 C 8 8
192 Cyprus 13218 A 8 8
193 Cyprus 13219 A 8 8
194 Cyprus 13220 G 8 8
195 Cyprus 13221 A 8 8
196 Cyprus 13222 A 8 8
197 Cyprus 13223 T 8 8
198 Cyprus 13224 C 8 8
199 Cyprus 13225 C 8 8
200 Cyprus 13226 T 8 8
201 Cyprus 13227 T 8 8
202 Cyprus 13228 T 8 8
203 Cyprus 13229 G 8 8
204 Cyprus 13230 G 8 8
205 Cyprus 13231 T 8 8
206 Cyprus 13232 G 8 8
207 Cyprus 13233 G 8 8
208 Cyprus 13234 T 8 8
209 Cyprus 13235 G 8 8
210 Cyprus 13236 C 8 8
211 Cyprus 13237 A 8 8
212 Cyprus 13238 T 8 8
213 Cyprus 13239 C 8 8
214 Cyprus 13240 G 8 8
215 Cyprus 13241 T 8 8
216 Cyprus 13242 G 8 8
217 Cyprus 13243 T 8 8
218 Cyprus 13244 T 8 8
219 Cyprus 13245 G 8 8
220 Cyprus 13246 T 8 8
221 Cyprus 13247 C 8 8
222 Cyprus 13248 T 8 8
223 Cyprus 13249 G 8 8
224 Cyprus 13250 T 8 8
225 Cyprus 13251 A 8 8
226 Cyprus 13252 C 8 8
227 Cyprus 13253 T 8 8
228 Cyprus 13254 G 8 8
229 Cyprus 13255 C 8 8
230 Cyprus 13256 C 8 8
231 Cyprus 13257 G 8 8
232 Cyprus 13258 T 8 8
233 Cyprus 13259 T 8 8
234 Cyprus 13260 G 8 8
235 Cyprus 13261 C 8 8
236 Cyprus 13262 C 8 8
237 Cyprus 13263 A 8 8
238 Cyprus 13264 C 8 8
239 Cyprus 13265 A 8 8
240 Cyprus 13266 T 8 8
241 Cyprus 13267 A 8 8
242 Cyprus 13268 G 8 8
243 Cyprus 13269 A 8 8
244 Cyprus 13270 T 8 8
245 Cyprus 13271 C 8 8
246 Cyprus 13272 A 8 8
247 Cyprus 13273 T 8 8
248 Cyprus 13274 C 8 8
249 Cyprus 13275 C 8 8
250 Cyprus 13276 A 8 8
251 Cyprus 13277 A 8 8
252 Cyprus 13278 A 8 8
253 Cyprus 13279 T 8 8
254 Cyprus 13280 C 8 8
255 Cyprus 13281 C 8 8
256 Cyprus 13282 T 8 8
257 Cyprus 13283 A 8 8
258 Cyprus 13284 A 8 8
259 Cyprus 13285 A 8 8
260 Cyprus 13286 G 8 8
261 Cyprus 13287 G 8 8
262 Cyprus 13288 A 8 8
263 Cyprus 13289 T 8 8
264 Cyprus 13290 T 8 8
265 Cyprus 13291 T 8 8
266 Cyprus 13292 T 8 8
267 Cyprus 13293 G 8 8
268 Cyprus 13294 T 8 8
269 Cyprus 13295 G 8 8
270 Cyprus 13296 A 8 8
271 Cyprus 13297 C 8 8
272 Cyprus 13298 T 8 8
273 Cyprus 13299 T 8 8
274 Cyprus 13300 A 8 8
275 Cyprus 13301 A 8 8
276 Cyprus 13302 A 8 8
277 Cyprus 13303 A 8 8
278 Cyprus 13304 G 8 8
279 Cyprus 13305 G 8 8
280 Cyprus 13306 T 8 8
281 Cyprus 13307 A 8 8
282 Cyprus 13308 A 8 8
283 Cyprus 13309 G 8 8
284 Cyprus 13310 T 8 8
285 Cyprus 13311 A 8 8
286 Cyprus 13312 T 8 8
287 Cyprus 13313 G 8 8
288 Cyprus 13314 T 8 8
289 Cyprus 13315 A 8 8
290 Cyprus 13316 C 8 8
291 Cyprus 13317 A 8 8
292 Cyprus 13318 A 8 8
293 Cyprus 13319 A 8 8
294 Cyprus 13320 T 8 8
295 Cyprus 13321 A 8 8
296 Cyprus 13322 C 8 8
297 Cyprus 13323 C 8 8
298 Cyprus 13324 T 8 8
299 Cyprus 13325 A 8 8
300 Cyprus 13326 C 8 8
301 Cyprus 13327 A 8 8
302 Cyprus 13328 A 8 8
303 Cyprus 13329 C 8 8
304 Cyprus 13330 T 8 8
305 Cyprus 13331 T 8 8
306 Cyprus 13332 G 8 8
307 Cyprus 13333 T 8 8
308 Cyprus 13334 G 8 8
309 Cyprus 13335 C 8 8
310 Cyprus 13336 T 8 8
311 Cyprus 13337 A 8 8
312 Cyprus 13338 A 8 8
313 Cyprus 13339 T 8 8
314 Cyprus 13340 G 8 8
315 Cyprus 13341 A 8 8
316 Cyprus 13342 C 8 8
317 Cyprus 13343 C 8 8
318 Cyprus 13344 C 8 8
319 Cyprus 13345 T 8 8
320 Cyprus 13346 G 8 8
321 Cyprus 13347 T 8 8
322 Cyprus 13348 G 8 8
323 Cyprus 13349 G 8 8
324 Cyprus 13350 G 8 8
325 Cyprus 13351 T 8 8
326 Cyprus 13352 T 8 8
327 Cyprus 13353 T 8 8
328 Cyprus 13354 T 8 8
329 Cyprus 13355 A 8 8
330 Cyprus 13356 C 8 8
331 Cyprus 13357 A 8 8
332 Cyprus 13358 C 8 8
333 Cyprus 13359 T 8 8
334 Cyprus 13360 T 8 8
335 Cyprus 13361 A 8 8
336 Cyprus 13362 A 8 8
337 Cyprus 13363 A 8 8
338 Cyprus 13364 A 8 8
339 Cyprus 13365 A 8 8
340 Cyprus 13366 C 8 8
341 Cyprus 13367 A 8 8
342 Cyprus 13368 C 8 8
343 Cyprus 13369 A 8 8
344 Cyprus 13370 G 8 8
345 Cyprus 13371 T 8 8
346 Cyprus 13372 C 8 8
347 Cyprus 13373 T 8 8
348 Cyprus 13374 G 8 8
349 Cyprus 13375 T 8 8
350 Cyprus 13376 A 8 8
351 Cyprus 13377 C 8 8
352 Cyprus 13378 C 8 8
353 Cyprus 13379 G 8 8
354 Cyprus 13380 T 8 8
355 Cyprus 13381 C 8 8
356 Cyprus 13382 T 8 8
357 Cyprus 13383 G 8 8
358 Cyprus 13384 C 8 8
359 Cyprus 13385 G 8 8
360 Cyprus 13386 G 8 8
361 Cyprus 13387 T 8 8
362 Cyprus 13388 A 8 8
363 Cyprus 13389 T 8 8
364 Cyprus 13390 G 8 8
365 Cyprus 13391 T 8 8
366 Cyprus 13392 G 8 8
367 Cyprus 13393 G 8 8
368 Cyprus 13394 A 8 8
369 Cyprus 13395 A 8 8
370 Cyprus 13396 A 8 8
371 Cyprus 13397 G 8 8
372 Cyprus 13398 G 8 8
373 Cyprus 13399 T 8 8
374 Cyprus 13400 T 8 8
375 Cyprus 13401 A 8 8
376 Cyprus 13402 T 8 8
377 Cyprus 13403 G 8 8
378 Cyprus 13404 G 8 8
379 Cyprus 13405 C 8 8
380 Cyprus 13406 T 8 8
381 Cyprus 13407 G 8 8
382 Cyprus 13408 T 8 8
383 Cyprus 13409 A 8 8
384 Cyprus 13410 G 8 8
385 Cyprus 13411 T 8 8
386 Cyprus 13412 T 8 8
387 Cyprus 13413 G 8 8
388 Cyprus 13414 T 8 8
389 Cyprus 13415 G 8 8
390 Cyprus 13416 A 8 8
391 Cyprus 13417 T 8 8
392 Cyprus 13418 C 8 8
393 Cyprus 13419 A 8 8
394 Cyprus 13420 A 8 8
395 Cyprus 13421 C 8 8
396 Cyprus 13422 T 8 8
397 Cyprus 13423 C 8 8
398 Cyprus 13424 C 8 8
399 Cyprus 13425 G 8 8
400 Cyprus 13426 C 8 8
401 Cyprus 13427 G 8 8
402 Cyprus 13428 A 8 8
403 Cyprus 13429 A 8 8
404 Cyprus 13430 C 8 8
405 Cyprus 13431 C 8 8
406 Cyprus 13432 C 8 8
407 Cyprus 13433 A 8 8
408 Cyprus 13434 T 8 8
409 Cyprus 13435 G 8 8
410 Cyprus 13436 C 8 8
411 Cyprus 13437 T 8 8
412 Cyprus 13438 T 8 8
413 Cyprus 13439 C 8 8
414 Cyprus 13440 A 8 8
415 Cyprus 13441 G 8 8