National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Croatia 13026 C 45 45
1 Croatia 13027 T 45 45
2 Croatia 13028 G 45 45
3 Croatia 13029 G 45 45
4 Croatia 13030 T 45 45
5 Croatia 13031 A 45 45
6 Croatia 13032 A 45 45
7 Croatia 13033 T 45 45
8 Croatia 13034 G 45 45
9 Croatia 13035 C 45 45
10 Croatia 13036 A 45 45
11 Croatia 13037 A 45 45
12 Croatia 13038 C 45 45
13 Croatia 13039 A 45 45
14 Croatia 13040 G 45 45
15 Croatia 13041 A 45 45
16 Croatia 13042 A 45 45
17 Croatia 13043 G 45 45
18 Croatia 13044 T 45 45
19 Croatia 13045 G 45 45
20 Croatia 13046 C 45 45
21 Croatia 13047 C 45 45
22 Croatia 13048 T 45 45
23 Croatia 13049 G 45 45
24 Croatia 13050 C 45 44
25 Croatia 13051 C 45 44
26 Croatia 13052 A 45 44
27 Croatia 13053 A 45 44
28 Croatia 13054 T 45 44
29 Croatia 13055 T 45 44
30 Croatia 13056 C 45 44
31 Croatia 13057 A 45 44
32 Croatia 13058 A 45 44
33 Croatia 13059 C 45 44
34 Croatia 13060 T 45 45
35 Croatia 13061 G 45 45
36 Croatia 13062 T 45 45
37 Croatia 13063 A 45 45
38 Croatia 13064 T 45 45
39 Croatia 13065 T 45 45
40 Croatia 13066 A 45 45
41 Croatia 13067 T 45 45
42 Croatia 13068 C 45 45
43 Croatia 13069 T 45 45
44 Croatia 13070 T 45 45
45 Croatia 13071 T 45 45
46 Croatia 13072 C 45 45
47 Croatia 13073 T 45 45
48 Croatia 13074 G 45 45
49 Croatia 13075 T 45 45
50 Croatia 13076 G 45 45
51 Croatia 13077 C 45 45
52 Croatia 13078 T 45 45
53 Croatia 13079 T 45 45
54 Croatia 13080 T 45 45
55 Croatia 13081 T 45 45
56 Croatia 13082 G 45 45
57 Croatia 13083 C 45 45
58 Croatia 13084 T 45 45
59 Croatia 13085 G 45 45
60 Croatia 13086 T 45 45
61 Croatia 13087 A 45 44
62 Croatia 13088 G 45 44
63 Croatia 13089 A 45 44
64 Croatia 13090 T 45 44
65 Croatia 13091 G 45 44
66 Croatia 13092 C 45 44
67 Croatia 13093 T 45 44
68 Croatia 13094 G 45 44
69 Croatia 13095 C 45 44
70 Croatia 13096 T 45 44
71 Croatia 13097 A 45 44
72 Croatia 13098 A 45 44
73 Croatia 13099 A 45 44
74 Croatia 13100 G 45 44
75 Croatia 13101 C 45 44
76 Croatia 13102 T 45 44
77 Croatia 13103 T 45 44
78 Croatia 13104 A 45 44
79 Croatia 13105 C 45 44
80 Croatia 13106 A 45 44
81 Croatia 13107 A 45 44
82 Croatia 13108 A 45 44
83 Croatia 13109 G 45 44
84 Croatia 13110 A 45 44
85 Croatia 13111 T 45 44
86 Croatia 13112 T 45 44
87 Croatia 13113 A 45 44
88 Croatia 13114 T 45 44
89 Croatia 13115 C 45 44
90 Croatia 13116 T 45 44
91 Croatia 13117 A 45 44
92 Croatia 13118 G 45 44
93 Croatia 13119 C 45 44
94 Croatia 13120 T 45 44
95 Croatia 13121 A 46 45
96 Croatia 13122 G 46 45
97 Croatia 13123 T 46 45
98 Croatia 13124 G 46 45
99 Croatia 13125 G 46 45
100 Croatia 13126 G 46 45
101 Croatia 13127 G 50 50
102 Croatia 13128 G 50 50
103 Croatia 13129 A 50 50
104 Croatia 13130 C 50 50
105 Croatia 13131 A 50 50
106 Croatia 13132 A 50 50
107 Croatia 13133 C 50 50
108 Croatia 13134 C 50 50
109 Croatia 13135 A 50 50
110 Croatia 13136 A 50 50
111 Croatia 13137 T 50 50
112 Croatia 13138 C 50 50
113 Croatia 13139 A 50 50
114 Croatia 13140 C 50 50
115 Croatia 13141 T 50 50
116 Croatia 13142 A 50 50
117 Croatia 13143 A 50 50
118 Croatia 13144 T 50 50
119 Croatia 13145 T 50 50
120 Croatia 13146 G 50 50
121 Croatia 13147 T 50 50
122 Croatia 13148 G 50 50
123 Croatia 13149 T 50 50
124 Croatia 13150 T 50 50
125 Croatia 13151 A 50 50
126 Croatia 13152 A 50 50
127 Croatia 13153 G 50 50
128 Croatia 13154 A 50 50
129 Croatia 13155 T 50 50
130 Croatia 13156 G 50 50
131 Croatia 13157 T 50 50
132 Croatia 13158 T 50 50
133 Croatia 13159 G 50 50
134 Croatia 13160 T 50 50
135 Croatia 13161 G 50 50
136 Croatia 13162 T 50 50
137 Croatia 13163 A 50 50
138 Croatia 13164 C 50 50
139 Croatia 13165 A 50 50
140 Croatia 13166 C 50 50
141 Croatia 13167 A 50 50
142 Croatia 13168 C 50 50
143 Croatia 13169 A 50 50
144 Croatia 13170 C 50 50
145 Croatia 13171 T 50 50
146 Croatia 13172 G 50 50
147 Croatia 13173 G 50 50
148 Croatia 13174 T 50 50
149 Croatia 13175 A 50 50
150 Croatia 13176 C 50 50
151 Croatia 13177 T 50 50
152 Croatia 13178 G 50 50
153 Croatia 13179 G 50 50
154 Croatia 13180 T 50 50
155 Croatia 13181 C 50 50
156 Croatia 13182 A 50 50
157 Croatia 13183 G 50 50
158 Croatia 13184 G 50 50
159 Croatia 13185 C 50 50
160 Croatia 13186 A 50 50
161 Croatia 13187 A 50 50
162 Croatia 13188 T 50 50
163 Croatia 13189 A 50 50
164 Croatia 13190 A 50 50
165 Croatia 13191 C 50 50
166 Croatia 13192 A 50 50
167 Croatia 13193 G 50 50
168 Croatia 13194 T 50 50
169 Croatia 13195 T 50 50
170 Croatia 13196 A 50 50
171 Croatia 13197 C 50 50
172 Croatia 13198 A 50 50
173 Croatia 13199 C 50 50
174 Croatia 13200 C 50 50
175 Croatia 13201 G 50 50
176 Croatia 13202 G 50 50
177 Croatia 13203 A 50 50
178 Croatia 13204 A 50 50
179 Croatia 13205 G 50 50
180 Croatia 13206 C 50 50
181 Croatia 13207 C 50 50
182 Croatia 13208 A 50 50
183 Croatia 13209 A 50 50
184 Croatia 13210 T 50 50
185 Croatia 13211 A 50 50
186 Croatia 13212 T 50 50
187 Croatia 13213 G 50 50
188 Croatia 13214 G 50 50
189 Croatia 13215 A 50 50
190 Croatia 13216 T 50 50
191 Croatia 13217 C 50 50
192 Croatia 13218 A 50 50
193 Croatia 13219 A 50 50
194 Croatia 13220 G 50 50
195 Croatia 13221 A 50 50
196 Croatia 13222 A 50 50
197 Croatia 13223 T 50 50
198 Croatia 13224 C 50 50
199 Croatia 13225 C 50 50
200 Croatia 13226 T 50 50
201 Croatia 13227 T 50 50
202 Croatia 13228 T 50 50
203 Croatia 13229 G 50 50
204 Croatia 13230 G 50 50
205 Croatia 13231 T 50 50
206 Croatia 13232 G 50 50
207 Croatia 13233 G 50 50
208 Croatia 13234 T 50 50
209 Croatia 13235 G 50 50
210 Croatia 13236 C 50 50
211 Croatia 13237 A 50 50
212 Croatia 13238 T 50 50
213 Croatia 13239 C 50 50
214 Croatia 13240 G 50 50
215 Croatia 13241 T 50 50
216 Croatia 13242 G 50 50
217 Croatia 13243 T 50 50
218 Croatia 13244 T 50 50
219 Croatia 13245 G 50 50
220 Croatia 13246 T 50 50
221 Croatia 13247 C 50 50
222 Croatia 13248 T 50 50
223 Croatia 13249 G 50 50
224 Croatia 13250 T 50 50
225 Croatia 13251 A 50 50
226 Croatia 13252 C 50 50
227 Croatia 13253 T 50 50
228 Croatia 13254 G 50 50
229 Croatia 13255 C 50 50
230 Croatia 13256 C 50 50
231 Croatia 13257 G 50 50
232 Croatia 13258 T 50 50
233 Croatia 13259 T 50 50
234 Croatia 13260 G 50 50
235 Croatia 13261 C 50 50
236 Croatia 13262 C 50 50
237 Croatia 13263 A 50 50
238 Croatia 13264 C 50 50
239 Croatia 13265 A 50 50
240 Croatia 13266 T 50 50
241 Croatia 13267 A 50 50
242 Croatia 13268 G 50 50
243 Croatia 13269 A 50 50
244 Croatia 13270 T 50 50
245 Croatia 13271 C 50 50
246 Croatia 13272 A 50 50
247 Croatia 13273 T 50 50
248 Croatia 13274 C 50 50
249 Croatia 13275 C 50 50
250 Croatia 13276 A 50 50
251 Croatia 13277 A 50 50
252 Croatia 13278 A 50 50
253 Croatia 13279 T 50 50
254 Croatia 13280 C 50 50
255 Croatia 13281 C 50 50
256 Croatia 13282 T 50 50
257 Croatia 13283 A 50 50
258 Croatia 13284 A 50 50
259 Croatia 13285 A 50 50
260 Croatia 13286 G 50 50
261 Croatia 13287 G 50 50
262 Croatia 13288 A 50 50
263 Croatia 13289 T 50 50
264 Croatia 13290 T 50 50
265 Croatia 13291 T 50 50
266 Croatia 13292 T 50 50
267 Croatia 13293 G 50 50
268 Croatia 13294 T 50 50
269 Croatia 13295 G 50 50
270 Croatia 13296 A 50 50
271 Croatia 13297 C 50 50
272 Croatia 13298 T 50 50
273 Croatia 13299 T 50 50
274 Croatia 13300 A 50 50
275 Croatia 13301 A 50 50
276 Croatia 13302 A 50 50
277 Croatia 13303 A 50 50
278 Croatia 13304 G 50 50
279 Croatia 13305 G 50 50
280 Croatia 13306 T 50 50
281 Croatia 13307 A 50 50
282 Croatia 13308 A 50 50
283 Croatia 13309 G 50 50
284 Croatia 13310 T 50 50
285 Croatia 13311 A 50 50
286 Croatia 13312 T 50 50
287 Croatia 13313 G 50 50
288 Croatia 13314 T 50 50
289 Croatia 13315 A 50 50
290 Croatia 13316 C 50 50
291 Croatia 13317 A 50 50
292 Croatia 13318 A 50 50
293 Croatia 13319 A 50 50
294 Croatia 13320 T 50 50
295 Croatia 13321 A 50 50
296 Croatia 13322 C 50 50
297 Croatia 13323 C 50 50
298 Croatia 13324 T 50 50
299 Croatia 13325 A 50 50
300 Croatia 13326 C 50 50
301 Croatia 13327 A 50 50
302 Croatia 13328 A 50 50
303 Croatia 13329 C 50 50
304 Croatia 13330 T 50 50
305 Croatia 13331 T 50 50
306 Croatia 13332 G 50 50
307 Croatia 13333 T 50 50
308 Croatia 13334 G 50 50
309 Croatia 13335 C 50 50
310 Croatia 13336 T 50 50
311 Croatia 13337 A 50 50
312 Croatia 13338 A 50 50
313 Croatia 13339 T 50 50
314 Croatia 13340 G 50 50
315 Croatia 13341 A 50 50
316 Croatia 13342 C 50 50
317 Croatia 13343 C 50 50
318 Croatia 13344 C 50 50
319 Croatia 13345 T 50 50
320 Croatia 13346 G 50 50
321 Croatia 13347 T 50 50
322 Croatia 13348 G 50 50
323 Croatia 13349 G 50 50
324 Croatia 13350 G 50 50
325 Croatia 13351 T 50 50
326 Croatia 13352 T 50 50
327 Croatia 13353 T 50 50
328 Croatia 13354 T 50 50
329 Croatia 13355 A 50 50
330 Croatia 13356 C 50 50
331 Croatia 13357 A 50 50
332 Croatia 13358 C 50 50
333 Croatia 13359 T 50 50
334 Croatia 13360 T 50 50
335 Croatia 13361 A 50 50
336 Croatia 13362 A 50 50
337 Croatia 13363 A 50 50
338 Croatia 13364 A 50 50
339 Croatia 13365 A 50 50
340 Croatia 13366 C 50 50
341 Croatia 13367 A 50 50
342 Croatia 13368 C 50 50
343 Croatia 13369 A 50 50
344 Croatia 13370 G 50 50
345 Croatia 13371 T 50 50
346 Croatia 13372 C 50 50
347 Croatia 13373 T 50 50
348 Croatia 13374 G 50 50
349 Croatia 13375 T 50 50
350 Croatia 13376 A 50 50
351 Croatia 13377 C 50 50
352 Croatia 13378 C 50 50
353 Croatia 13379 G 50 50
354 Croatia 13380 T 50 50
355 Croatia 13381 C 50 50
356 Croatia 13382 T 50 50
357 Croatia 13383 G 50 50
358 Croatia 13384 C 50 50
359 Croatia 13385 G 50 50
360 Croatia 13386 G 50 50
361 Croatia 13387 T 50 50
362 Croatia 13388 A 50 50
363 Croatia 13389 T 50 50
364 Croatia 13390 G 50 50
365 Croatia 13391 T 50 50
366 Croatia 13392 G 50 50
367 Croatia 13393 G 50 50
368 Croatia 13394 A 50 50
369 Croatia 13395 A 50 50
370 Croatia 13396 A 50 50
371 Croatia 13397 G 50 50
372 Croatia 13398 G 50 50
373 Croatia 13399 T 50 50
374 Croatia 13400 T 50 50
375 Croatia 13401 A 50 50
376 Croatia 13402 T 50 50
377 Croatia 13403 G 50 50
378 Croatia 13404 G 50 50
379 Croatia 13405 C 50 50
380 Croatia 13406 T 50 50
381 Croatia 13407 G 50 50
382 Croatia 13408 T 50 50
383 Croatia 13409 A 50 50
384 Croatia 13410 G 50 50
385 Croatia 13411 T 50 50
386 Croatia 13412 T 50 50
387 Croatia 13413 G 50 50
388 Croatia 13414 T 50 50
389 Croatia 13415 G 50 50
390 Croatia 13416 A 50 50
391 Croatia 13417 T 50 50
392 Croatia 13418 C 50 50
393 Croatia 13419 A 50 50
394 Croatia 13420 A 50 50
395 Croatia 13421 C 50 50
396 Croatia 13422 T 50 50
397 Croatia 13423 C 50 50
398 Croatia 13424 C 50 50
399 Croatia 13425 G 50 50
400 Croatia 13426 C 50 50
401 Croatia 13427 G 50 50
402 Croatia 13428 A 50 50
403 Croatia 13429 A 50 50
404 Croatia 13430 C 50 50
405 Croatia 13431 C 50 50
406 Croatia 13432 C 50 50
407 Croatia 13433 A 50 50
408 Croatia 13434 T 50 50
409 Croatia 13435 G 50 50
410 Croatia 13436 C 50 50
411 Croatia 13437 T 50 50
412 Croatia 13438 T 50 50
413 Croatia 13439 C 50 50
414 Croatia 13440 A 50 50
415 Croatia 13441 G 50 50