National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                   2    
C   39                                        
D   21     1 1                                
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                   1                    
M   12                                        
N   21                 1               1      
P   24                   1     1     1        
Q   18                           1            
R   6                                        
S   18                                        
T   39               1                        
V   27               1                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Chile 13026 C 961 961
1 Chile 13027 T 961 961
2 Chile 13028 G 961 961
3 Chile 13029 G 961 961
4 Chile 13030 T 962 962
5 Chile 13031 A 962 962
6 Chile 13032 A 962 962
7 Chile 13033 T 962 962
8 Chile 13034 G 962 962
9 Chile 13035 C 962 962
10 Chile 13036 A 962 962
11 Chile 13037 A 962 962
12 Chile 13038 C 962 962
13 Chile 13039 A 962 962
14 Chile 13040 G 962 962
15 Chile 13041 A 962 962
16 Chile 13042 A 962 962
17 Chile 13043 G 962 962
18 Chile 13044 T 962 962
19 Chile 13045 G 962 962
20 Chile 13046 C 962 962
21 Chile 13047 C 962 962
22 Chile 13048 T 962 962
23 Chile 13049 G 962 962
24 Chile 13050 C 962 962
25 Chile 13051 C 962 962
26 Chile 13052 A 962 962
27 Chile 13053 A 962 962
28 Chile 13054 T 962 962
29 Chile 13055 T 962 962
30 Chile 13056 C 962 962
31 Chile 13057 A 962 962
32 Chile 13058 A 962 962
33 Chile 13059 C T 962 961 Thr4265Ile
34 Chile 13060 T 962 962
35 Chile 13061 G A 962 961 Val4266Ile
36 Chile 13062 T 962 962
37 Chile 13063 A 962 962
38 Chile 13064 T 962 962
39 Chile 13065 T 962 962
40 Chile 13066 A 962 962
41 Chile 13067 T 962 962
42 Chile 13068 C 962 962
43 Chile 13069 T 962 962
44 Chile 13070 T 962 962
45 Chile 13071 T 962 962
46 Chile 13072 C 962 962
47 Chile 13073 T 962 962
48 Chile 13074 G 962 962
49 Chile 13075 T 962 962
50 Chile 13076 G 962 962
51 Chile 13077 C 962 962
52 Chile 13078 T 962 962
53 Chile 13079 T 962 962
54 Chile 13080 T 962 962
55 Chile 13081 T 962 962
56 Chile 13082 G 962 962
57 Chile 13083 C 962 962
58 Chile 13084 T 962 962
59 Chile 13085 G 962 962
60 Chile 13086 T 962 962
61 Chile 13087 A 962 962
62 Chile 13088 G 962 962
63 Chile 13089 A 962 962
64 Chile 13090 T 962 962
65 Chile 13091 G 962 962
66 Chile 13092 C 962 962
67 Chile 13093 T 962 962
68 Chile 13094 G 962 962
69 Chile 13095 C 962 962
70 Chile 13096 T 962 962
71 Chile 13097 A 962 962
72 Chile 13098 A 962 962
73 Chile 13099 A 962 962
74 Chile 13100 G 962 962
75 Chile 13101 C 962 962
76 Chile 13102 T 962 962
77 Chile 13103 T 962 962
78 Chile 13104 A 962 962
79 Chile 13105 C 962 962
80 Chile 13106 A 962 962
81 Chile 13107 A 962 962
82 Chile 13108 A 962 962
83 Chile 13109 G 962 962
84 Chile 13110 A 962 962
85 Chile 13111 T 962 962
86 Chile 13112 T 962 962
87 Chile 13113 A 962 962
88 Chile 13114 T 962 962
89 Chile 13115 C T 962 960 Leu4284Leu
90 Chile 13116 T 962 962
91 Chile 13117 A 962 962
92 Chile 13118 G 962 962
93 Chile 13119 C T 962 961 Ala4285Val
94 Chile 13120 T 962 962
95 Chile 13121 A 962 962
96 Chile 13122 G 962 962
97 Chile 13123 T 962 962
98 Chile 13124 G 962 962
99 Chile 13125 G 962 962
100 Chile 13126 G 962 962
101 Chile 13127 G 962 962
102 Chile 13128 G 962 962
103 Chile 13129 A 962 962
104 Chile 13130 C 962 962
105 Chile 13131 A 962 962
106 Chile 13132 A 962 962
107 Chile 13133 C 962 962
108 Chile 13134 C 962 962
109 Chile 13135 A 962 962
110 Chile 13136 A 962 962
111 Chile 13137 T 962 962
112 Chile 13138 C 962 962
113 Chile 13139 A 962 962
114 Chile 13140 C 962 962
115 Chile 13141 T 962 962
116 Chile 13142 A 962 962
117 Chile 13143 A 962 962
118 Chile 13144 T 962 962
119 Chile 13145 T 962 962
120 Chile 13146 G 962 962
121 Chile 13147 T 962 962
122 Chile 13148 G 962 962
123 Chile 13149 T 962 962
124 Chile 13150 T 962 962
125 Chile 13151 A 962 962
126 Chile 13152 A 962 962
127 Chile 13153 G 962 962
128 Chile 13154 A 962 962
129 Chile 13155 T 962 962
130 Chile 13156 G 962 962
131 Chile 13157 T 962 962
132 Chile 13158 T 962 962
133 Chile 13159 G 962 962
134 Chile 13160 T 962 962
135 Chile 13161 G 962 962
136 Chile 13162 T 962 962
137 Chile 13163 A 962 962
138 Chile 13164 C 962 962
139 Chile 13165 A 962 962
140 Chile 13166 C 962 962
141 Chile 13167 A 962 962
142 Chile 13168 C 962 962
143 Chile 13169 A 962 962
144 Chile 13170 C 962 962
145 Chile 13171 T 962 962
146 Chile 13172 G 962 962
147 Chile 13173 G 962 962
148 Chile 13174 T 962 962
149 Chile 13175 A 962 962
150 Chile 13176 C 962 962
151 Chile 13177 T 962 962
152 Chile 13178 G 962 962
153 Chile 13179 G 962 962
154 Chile 13180 T 962 962
155 Chile 13181 C 962 962
156 Chile 13182 A 962 962
157 Chile 13183 G A 962 961 Gln4306Gln
158 Chile 13184 G 962 962
159 Chile 13185 C 962 962
160 Chile 13186 A 962 962
161 Chile 13187 A 962 962
162 Chile 13188 T 962 962
163 Chile 13189 A 962 962
164 Chile 13190 A 962 962
165 Chile 13191 C 962 962
166 Chile 13192 A 962 962
167 Chile 13193 G 962 962
168 Chile 13194 T 962 962
169 Chile 13195 T 962 962
170 Chile 13196 A 962 962
171 Chile 13197 C 962 962
172 Chile 13198 A 962 962
173 Chile 13199 C 962 962
174 Chile 13200 C 962 962
175 Chile 13201 G A 962 903 Pro4312Pro
176 Chile 13202 G 962 962
177 Chile 13203 A 962 962
178 Chile 13204 A 962 962
179 Chile 13205 G 962 962
180 Chile 13206 C 962 962
181 Chile 13207 C 962 962
182 Chile 13208 A 962 962
183 Chile 13209 A 962 962
184 Chile 13210 T 962 962
185 Chile 13211 A 962 962
186 Chile 13212 T 962 962
187 Chile 13213 G 962 962
188 Chile 13214 G 962 962
189 Chile 13215 A 962 962
190 Chile 13216 T 962 962
191 Chile 13217 C 962 962
192 Chile 13218 A 962 962
193 Chile 13219 A 962 962
194 Chile 13220 G 962 962
195 Chile 13221 A 962 961
196 Chile 13222 A 962 962
197 Chile 13223 T 962 962
198 Chile 13224 C 962 962
199 Chile 13225 C 962 962
200 Chile 13226 T 962 962
201 Chile 13227 T 962 962
202 Chile 13228 T 962 962
203 Chile 13229 G 962 962
204 Chile 13230 G 962 962
205 Chile 13231 T 962 962
206 Chile 13232 G 962 962
207 Chile 13233 G 962 962
208 Chile 13234 T 962 962
209 Chile 13235 G 962 962
210 Chile 13236 C 962 962
211 Chile 13237 A 962 962
212 Chile 13238 T 962 962
213 Chile 13239 C 962 962
214 Chile 13240 G 962 962
215 Chile 13241 T 962 962
216 Chile 13242 G 962 962
217 Chile 13243 T 962 961
218 Chile 13244 T 962 962
219 Chile 13245 G 962 962
220 Chile 13246 T 962 962
221 Chile 13247 C 962 962
222 Chile 13248 T 962 962
223 Chile 13249 G 962 962
224 Chile 13250 T 962 962
225 Chile 13251 A 962 962
226 Chile 13252 C 962 962
227 Chile 13253 T 962 962
228 Chile 13254 G 962 962
229 Chile 13255 C 962 962
230 Chile 13256 C 962 962
231 Chile 13257 G 962 962
232 Chile 13258 T 962 962
233 Chile 13259 T 962 962
234 Chile 13260 G 962 962
235 Chile 13261 C 962 962
236 Chile 13262 C 962 962
237 Chile 13263 A 962 962
238 Chile 13264 C 962 962
239 Chile 13265 A 962 962
240 Chile 13266 T 962 962
241 Chile 13267 A 962 962
242 Chile 13268 G 962 962
243 Chile 13269 A 962 962
244 Chile 13270 T G,C 962 957 Asp4335Glu-p.Asp4335Asp
245 Chile 13271 C 962 962
246 Chile 13272 A 962 962
247 Chile 13273 T 962 962
248 Chile 13274 C T 962 960 Pro4337Ser
249 Chile 13275 C 962 962
250 Chile 13276 A 962 962
251 Chile 13277 A 962 962
252 Chile 13278 A 962 962
253 Chile 13279 T 962 962
254 Chile 13280 C 962 962
255 Chile 13281 C 962 962
256 Chile 13282 T 962 962
257 Chile 13283 A 962 962
258 Chile 13284 A 962 962
259 Chile 13285 A 962 962
260 Chile 13286 G 962 962
261 Chile 13287 G 962 962
262 Chile 13288 A 962 962
263 Chile 13289 T 962 962
264 Chile 13290 T 962 962
265 Chile 13291 T 962 962
266 Chile 13292 T 962 962
267 Chile 13293 G 962 962
268 Chile 13294 T 962 962
269 Chile 13295 G 962 962
270 Chile 13296 A 962 962
271 Chile 13297 C 962 962
272 Chile 13298 T 962 962
273 Chile 13299 T 962 962
274 Chile 13300 A 962 962
275 Chile 13301 A 962 962
276 Chile 13302 A 962 962
277 Chile 13303 A 962 962
278 Chile 13304 G 962 962
279 Chile 13305 G 962 962
280 Chile 13306 T 962 962
281 Chile 13307 A 962 962
282 Chile 13308 A 962 962
283 Chile 13309 G 962 962
284 Chile 13310 T 963 963
285 Chile 13311 A 963 963
286 Chile 13312 T 963 963
287 Chile 13313 G 963 963
288 Chile 13314 T 963 963
289 Chile 13315 A 963 963
290 Chile 13316 C 963 963
291 Chile 13317 A 963 963
292 Chile 13318 A 963 963
293 Chile 13319 A 964 964
294 Chile 13320 T 964 964
295 Chile 13321 A 964 964
296 Chile 13322 C 964 964
297 Chile 13323 C 964 964
298 Chile 13324 T 964 964
299 Chile 13325 A 964 964
300 Chile 13326 C 964 964
301 Chile 13327 A 964 964
302 Chile 13328 A 964 964
303 Chile 13329 C 964 964
304 Chile 13330 T 964 964
305 Chile 13331 T 964 964
306 Chile 13332 G 964 964
307 Chile 13333 T 964 964
308 Chile 13334 G 964 964
309 Chile 13335 C T 964 963 Ala4357Val
310 Chile 13336 T 964 964
311 Chile 13337 A 966 966
312 Chile 13338 A C 966 965 Asn4358Thr
313 Chile 13339 T A 966 965 Asn4358Lys
314 Chile 13340 G 966 966
315 Chile 13341 A 966 966
316 Chile 13342 C 966 966
317 Chile 13343 C 966 966
318 Chile 13344 C 966 966
319 Chile 13345 T 966 966
320 Chile 13346 G 966 966
321 Chile 13347 T 966 966
322 Chile 13348 G 966 966
323 Chile 13349 G 966 966
324 Chile 13350 G 966 966
325 Chile 13351 T 966 966
326 Chile 13352 T 966 966
327 Chile 13353 T 966 966
328 Chile 13354 T 966 966
329 Chile 13355 A 966 966
330 Chile 13356 C 966 966
331 Chile 13357 A 966 966
332 Chile 13358 C 966 966
333 Chile 13359 T 966 966
334 Chile 13360 T 966 966
335 Chile 13361 A 966 966
336 Chile 13362 A 966 966
337 Chile 13363 A 966 966
338 Chile 13364 A 965 965
339 Chile 13365 A 965 965
340 Chile 13366 C 965 965
341 Chile 13367 A 965 965
342 Chile 13368 C 965 965
343 Chile 13369 A 965 965
344 Chile 13370 G 965 965
345 Chile 13371 T 965 965
346 Chile 13372 C 965 965
347 Chile 13373 T 965 965
348 Chile 13374 G 965 965
349 Chile 13375 T 965 965
350 Chile 13376 A 965 965
351 Chile 13377 C 965 965
352 Chile 13378 C 965 964
353 Chile 13379 G 965 965
354 Chile 13380 T 965 965
355 Chile 13381 C 965 965
356 Chile 13382 T 965 965
357 Chile 13383 G 965 965
358 Chile 13384 C 965 965
359 Chile 13385 G 965 965
360 Chile 13386 G 965 965
361 Chile 13387 T 965 965
362 Chile 13388 A 965 965
363 Chile 13389 T 965 965
364 Chile 13390 G 965 965
365 Chile 13391 T 965 965
366 Chile 13392 G 965 965
367 Chile 13393 G 965 965
368 Chile 13394 A 965 965
369 Chile 13395 A 965 965
370 Chile 13396 A 965 965
371 Chile 13397 G 965 965
372 Chile 13398 G 965 965
373 Chile 13399 T 965 965
374 Chile 13400 T 965 965
375 Chile 13401 A 965 965
376 Chile 13402 T 965 965
377 Chile 13403 G 965 965
378 Chile 13404 G 965 965
379 Chile 13405 C 965 965
380 Chile 13406 T 965 965
381 Chile 13407 G 965 965
382 Chile 13408 T 965 965
383 Chile 13409 A 965 964
384 Chile 13410 G 965 965
385 Chile 13411 T 965 965
386 Chile 13412 T 965 965
387 Chile 13413 G 965 965
388 Chile 13414 T 965 965
389 Chile 13415 G 965 965
390 Chile 13416 A 965 965
391 Chile 13417 T 965 965
392 Chile 13418 C 965 965
393 Chile 13419 A 965 965
394 Chile 13420 A 965 965
395 Chile 13421 C 965 965
396 Chile 13422 T 965 965
397 Chile 13423 C 965 965
398 Chile 13424 C 965 965
399 Chile 13425 G 965 965
400 Chile 13426 C 965 965
401 Chile 13427 G 965 965
402 Chile 13428 A 965 965
403 Chile 13429 A 965 965
404 Chile 13430 C 965 965
405 Chile 13431 C T 965 963 Pro4389Leu
406 Chile 13432 C 965 965
407 Chile 13433 A 965 965
408 Chile 13434 T 965 965
409 Chile 13435 G 965 965
410 Chile 13436 C 965 965
411 Chile 13437 T 965 965
412 Chile 13438 T 965 965
413 Chile 13439 C 965 965
414 Chile 13440 A 965 965
415 Chile 13441 G 965 965