National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 2                                 3    
C   39   1                                    
D   21     2 1                                
E   12                                        
F   15         1                              
G   39           2                       1    
H   9             2                          
I   12                   1                    
K   24                 1           1          
L   24                   4                    
M   12               1                        
N   21                 1                      
P   24                         4     3        
Q   18                                        
R   6                             1          
S   18               1               3        
T   39               5                 3      
V   27               1                   1    
W   3                                        
Y   15                                       1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Canada 13026 C 8552 8552
1 Canada 13027 T 8552 8552
2 Canada 13028 G 8552 8552
3 Canada 13029 G 8552 8552
4 Canada 13030 T 8559 8559
5 Canada 13031 A 8559 8559
6 Canada 13032 A 8559 8559
7 Canada 13033 T 8559 8559
8 Canada 13034 G 8559 8559
9 Canada 13035 C 8559 8559
10 Canada 13036 A 8559 8559
11 Canada 13037 A 8559 8559
12 Canada 13038 C 8559 8559
13 Canada 13039 A 8559 8559
14 Canada 13040 G 8559 8559
15 Canada 13041 A 8559 8559
16 Canada 13042 A 8559 8559
17 Canada 13043 G 8559 8559
18 Canada 13044 T 8559 8559
19 Canada 13045 G 8559 8559
20 Canada 13046 C T 8559 8558 Pro4261Ser
21 Canada 13047 C 8559 8559
22 Canada 13048 T 8559 8559
23 Canada 13049 G 8559 8559
24 Canada 13050 C T 8559 8558 Ala4262Val
25 Canada 13051 C T 8559 8556 Ala4262Ala
26 Canada 13052 A 8559 8559
27 Canada 13053 A 8559 8559
28 Canada 13054 T 8559 8559
29 Canada 13055 T 8559 8559
30 Canada 13056 C 8559 8559
31 Canada 13057 A 8559 8559
32 Canada 13058 A 8559 8559
33 Canada 13059 C 8559 8559
34 Canada 13060 T 8559 8559
35 Canada 13061 G 8559 8559
36 Canada 13062 T 8559 8559
37 Canada 13063 A 8559 8559
38 Canada 13064 T 8559 8559
39 Canada 13065 T 8559 8559
40 Canada 13066 A 8559 8559
41 Canada 13067 T 8559 8559
42 Canada 13068 C 8559 8559
43 Canada 13069 T G 8559 8557 Ser4268Ser
44 Canada 13070 T 8559 8559
45 Canada 13071 T 8559 8559
46 Canada 13072 C 8559 8559
47 Canada 13073 T 8559 8559
48 Canada 13074 G 8559 8559
49 Canada 13075 T 8559 8559
50 Canada 13076 G 8559 8559
51 Canada 13077 C 8559 8559
52 Canada 13078 T 8559 8559
53 Canada 13079 T 8559 8559
54 Canada 13080 T 8559 8559
55 Canada 13081 T 8559 8559
56 Canada 13082 G 8559 8559
57 Canada 13083 C 8559 8559
58 Canada 13084 T 8559 8559
59 Canada 13085 G A 8559 8558 Val4274Ile
60 Canada 13086 T 8559 8559
61 Canada 13087 A 8559 8559
62 Canada 13088 G 8559 8559
63 Canada 13089 A 8559 8559
64 Canada 13090 T 8559 8559
65 Canada 13091 G 8559 8559
66 Canada 13092 C 8559 8559
67 Canada 13093 T 8559 8559
68 Canada 13094 G 8559 8559
69 Canada 13095 C 8559 8559
70 Canada 13096 T C 8559 8557 Ala4277Ala
71 Canada 13097 A 8559 8559
72 Canada 13098 A 8559 8559
73 Canada 13099 A 8559 8559
74 Canada 13100 G 8559 8559
75 Canada 13101 C 8559 8559
76 Canada 13102 T 8559 8559
77 Canada 13103 T 8559 8559
78 Canada 13104 A 8559 8559
79 Canada 13105 C 8559 8559
80 Canada 13106 A 8559 8559
81 Canada 13107 A G 8559 8558 Lys4281Arg
82 Canada 13108 A 8559 8559
83 Canada 13109 G 8559 8559
84 Canada 13110 A 8559 8559
85 Canada 13111 T 8559 8559
86 Canada 13112 T 8559 8559
87 Canada 13113 A 8559 8559
88 Canada 13114 T C 8559 8558 Tyr4283Tyr
89 Canada 13115 C T 8559 8558 Leu4284Leu
90 Canada 13116 T 8559 8559
91 Canada 13117 A 8559 8559
92 Canada 13118 G 8559 8559
93 Canada 13119 C T 8559 8556 Ala4285Val
94 Canada 13120 T 8559 8559
95 Canada 13121 A 8559 8559
96 Canada 13122 G T 8559 8558 Ser4286Ile
97 Canada 13123 T 8559 8559
98 Canada 13124 G 8559 8559
99 Canada 13125 G 8559 8559
100 Canada 13126 G T 8559 8556 Gly4287Gly
101 Canada 13127 G 8559 8559
102 Canada 13128 G 8559 8559
103 Canada 13129 A 8559 8559
104 Canada 13130 C 8559 8559
105 Canada 13131 A 8559 8559
106 Canada 13132 A 8559 8559
107 Canada 13133 C 8559 8559
108 Canada 13134 C 8559 8559
109 Canada 13135 A 8559 8559
110 Canada 13136 A 8559 8559
111 Canada 13137 T 8559 8559
112 Canada 13138 C 8559 8559
113 Canada 13139 A 8559 8559
114 Canada 13140 C T 8559 8556 Thr4292Ile
115 Canada 13141 T G 8559 8558 Thr4292Thr
116 Canada 13142 A 8559 8559
117 Canada 13143 A 8559 8559
118 Canada 13144 T 8559 8559
119 Canada 13145 T 8559 8559
120 Canada 13146 G 8559 8559
121 Canada 13147 T 8559 8559
122 Canada 13148 G 8559 8559
123 Canada 13149 T 8559 8559
124 Canada 13150 T 8559 8559
125 Canada 13151 A 8559 8559
126 Canada 13152 A 8559 8559
127 Canada 13153 G 8559 8559
128 Canada 13154 A 8559 8559
129 Canada 13155 T 8559 8559
130 Canada 13156 G 8559 8559
131 Canada 13157 T 8559 8559
132 Canada 13158 T 8559 8559
133 Canada 13159 G 8559 8559
134 Canada 13160 T 8559 8559
135 Canada 13161 G 8559 8559
136 Canada 13162 T 8559 8559
137 Canada 13163 A 8559 8559
138 Canada 13164 C 8559 8558
139 Canada 13165 A 8559 8559
140 Canada 13166 C 8559 8559
141 Canada 13167 A 8559 8559
142 Canada 13168 C 8559 8559
143 Canada 13169 A 8559 8559
144 Canada 13170 C 8559 8559
145 Canada 13171 T 8559 8559
146 Canada 13172 G 8559 8559
147 Canada 13173 G 8559 8559
148 Canada 13174 T 8559 8559
149 Canada 13175 A 8559 8558
150 Canada 13176 C T 8559 8551 Thr4304Ile
151 Canada 13177 T 8559 8559
152 Canada 13178 G 8559 8559
153 Canada 13179 G 8559 8559
154 Canada 13180 T C 8559 8556 Gly4305Gly
155 Canada 13181 C 8559 8559
156 Canada 13182 A 8559 8559
157 Canada 13183 G 8559 8559
158 Canada 13184 G 8559 8559
159 Canada 13185 C 8559 8559
160 Canada 13186 A 8559 8559
161 Canada 13187 A 8559 8559
162 Canada 13188 T 8559 8559
163 Canada 13189 A 8559 8559
164 Canada 13190 A 8559 8559
165 Canada 13191 C 8559 8559
166 Canada 13192 A 8559 8559
167 Canada 13193 G 8559 8559
168 Canada 13194 T 8559 8559
169 Canada 13195 T 8559 8559
170 Canada 13196 A 8559 8559
171 Canada 13197 C T 8559 8558 Thr4311Ile
172 Canada 13198 A 8559 8559
173 Canada 13199 C 8559 8559
174 Canada 13200 C 8559 8559
175 Canada 13201 G A,T 8559 8556 Pro4312Pro-p.Pro4312Pro
176 Canada 13202 G 8559 8559
177 Canada 13203 A 8559 8559
178 Canada 13204 A 8559 8559
179 Canada 13205 G 8559 8559
180 Canada 13206 C 8559 8559
181 Canada 13207 C 8559 8559
182 Canada 13208 A 8559 8559
183 Canada 13209 A 8559 8559
184 Canada 13210 T 8559 8559
185 Canada 13211 A 8559 8559
186 Canada 13212 T 8559 8559
187 Canada 13213 G A 8559 8557 Met4316Ile
188 Canada 13214 G 8559 8559
189 Canada 13215 A 8559 8559
190 Canada 13216 T G 8559 8553 Asp4317Glu
191 Canada 13217 C 8559 8559
192 Canada 13218 A 8559 8559
193 Canada 13219 A 8559 8559
194 Canada 13220 G 8559 8559
195 Canada 13221 A 8559 8559
196 Canada 13222 A 8559 8559
197 Canada 13223 T 8559 8559
198 Canada 13224 C 8559 8559
199 Canada 13225 C T 8559 8553 Ser4320Ser
200 Canada 13226 T 8559 8559
201 Canada 13227 T 8559 8559
202 Canada 13228 T C 8559 8558 Phe4321Phe
203 Canada 13229 G 8559 8559
204 Canada 13230 G 8559 8559
205 Canada 13231 T 8559 8559
206 Canada 13232 G 8559 8559
207 Canada 13233 G 8559 8559
208 Canada 13234 T 8559 8559
209 Canada 13235 G 8559 8559
210 Canada 13236 C 8559 8559
211 Canada 13237 A 8559 8559
212 Canada 13238 T 8559 8559
213 Canada 13239 C 8559 8559
214 Canada 13240 G A 8559 8558 Ser4325Ser
215 Canada 13241 T 8559 8559
216 Canada 13242 G 8559 8559
217 Canada 13243 T 8559 8559
218 Canada 13244 T 8559 8559
219 Canada 13245 G 8559 8559
220 Canada 13246 T 8559 8559
221 Canada 13247 C T 8559 8543 Leu4328Leu
222 Canada 13248 T 8559 8559
223 Canada 13249 G A 8559 8557 Leu4328Leu
224 Canada 13250 T 8559 8559
225 Canada 13251 A 8559 8559
226 Canada 13252 C 8559 8559
227 Canada 13253 T 8559 8559
228 Canada 13254 G 8559 8559
229 Canada 13255 C T 8559 8557 Cys4330Cys
230 Canada 13256 C 8559 8559
231 Canada 13257 G 8559 8559
232 Canada 13258 T 8559 8559
233 Canada 13259 T 8559 8559
234 Canada 13260 G 8559 8559
235 Canada 13261 C 8559 8559
236 Canada 13262 C 8559 8559
237 Canada 13263 A 8559 8559
238 Canada 13264 C T 8559 8557 His4333His
239 Canada 13265 A C 8559 8558 Ile4334Leu
240 Canada 13266 T 8559 8559
241 Canada 13267 A 8559 8559
242 Canada 13268 G 8559 8559
243 Canada 13269 A 8559 8559
244 Canada 13270 T 8559 8559
245 Canada 13271 C 8559 8559
246 Canada 13272 A 8559 8559
247 Canada 13273 T C 8559 8558 His4336His
248 Canada 13274 C T 8559 8550 Pro4337Ser
249 Canada 13275 C 8559 8558
250 Canada 13276 A 8559 8559
251 Canada 13277 A 8559 8559
252 Canada 13278 A 8559 8559
253 Canada 13279 T 8559 8559
254 Canada 13280 C 8559 8559
255 Canada 13281 C 8559 8559
256 Canada 13282 T 8559 8559
257 Canada 13283 A 8559 8559
258 Canada 13284 A 8559 8559
259 Canada 13285 A 8559 8559
260 Canada 13286 G 8559 8559
261 Canada 13287 G 8559 8559
262 Canada 13288 A 8559 8559
263 Canada 13289 T 8559 8559
264 Canada 13290 T 8559 8559
265 Canada 13291 T 8559 8559
266 Canada 13292 T 8559 8559
267 Canada 13293 G 8559 8559
268 Canada 13294 T 8559 8559
269 Canada 13295 G 8559 8559
270 Canada 13296 A 8559 8559
271 Canada 13297 C T 8559 8536 Asp4344Asp
272 Canada 13298 T 8559 8559
273 Canada 13299 T 8559 8559
274 Canada 13300 A 8559 8559
275 Canada 13301 A 8559 8559
276 Canada 13302 A 8559 8559
277 Canada 13303 A 8559 8559
278 Canada 13304 G 8559 8559
279 Canada 13305 G 8559 8559
280 Canada 13306 T 8559 8559
281 Canada 13307 A 8559 8559
282 Canada 13308 A 8559 8559
283 Canada 13309 G 8559 8559
284 Canada 13310 T 8559 8559
285 Canada 13311 A 8559 8559
286 Canada 13312 T 8559 8559
287 Canada 13313 G 8559 8559
288 Canada 13314 T 8559 8559
289 Canada 13315 A 8559 8559
290 Canada 13316 C 8559 8559
291 Canada 13317 A 8559 8559
292 Canada 13318 A 8559 8559
293 Canada 13319 A 8559 8559
294 Canada 13320 T 8559 8559
295 Canada 13321 A 8559 8559
296 Canada 13322 C 8559 8559
297 Canada 13323 C 8559 8559
298 Canada 13324 T 8559 8559
299 Canada 13325 A 8559 8559
300 Canada 13326 C 8559 8559
301 Canada 13327 A 8559 8559
302 Canada 13328 A 8559 8559
303 Canada 13329 C T 8559 8558 Thr4355Ile
304 Canada 13330 T 8559 8559
305 Canada 13331 T 8559 8559
306 Canada 13332 G 8559 8559
307 Canada 13333 T 8559 8559
308 Canada 13334 G 8559 8559
309 Canada 13335 C T 8559 8556 Ala4357Val
310 Canada 13336 T 8559 8559
311 Canada 13337 A 8559 8559
312 Canada 13338 A 8559 8559
313 Canada 13339 T A 8559 8548 Asn4358Lys
314 Canada 13340 G 8559 8559
315 Canada 13341 A 8559 8559
316 Canada 13342 C T 8559 8558 Asp4359Asp
317 Canada 13343 C 8559 8559
318 Canada 13344 C 8559 8559
319 Canada 13345 T C 8559 8557 Pro4360Pro
320 Canada 13346 G 8559 8559
321 Canada 13347 T 8559 8559
322 Canada 13348 G T 8559 8551 Val4361Val
323 Canada 13349 G 8559 8559
324 Canada 13350 G 8559 8559
325 Canada 13351 T 8559 8559
326 Canada 13352 T 8559 8559
327 Canada 13353 T 8559 8559
328 Canada 13354 T 8559 8559
329 Canada 13355 A 8559 8559
330 Canada 13356 C T 8559 8531 Thr4364Ile
331 Canada 13357 A G 8559 8555 Thr4364Thr
332 Canada 13358 C 8559 8559
333 Canada 13359 T 8559 8559
334 Canada 13360 T 8559 8559
335 Canada 13361 A 8559 8559
336 Canada 13362 A 8559 8559
337 Canada 13363 A 8559 8559
338 Canada 13364 A 8548 8544
339 Canada 13365 A 8548 8544
340 Canada 13366 C 8548 8545
341 Canada 13367 A 8548 8546
342 Canada 13368 C 8548 8547
343 Canada 13369 A 8548 8547
344 Canada 13370 G 8548 8548
345 Canada 13371 T 8548 8548
346 Canada 13372 C 8548 8546
347 Canada 13373 T 8548 8548
348 Canada 13374 G 8548 8548
349 Canada 13375 T 8548 8548
350 Canada 13376 A 8548 8548
351 Canada 13377 C 8548 8547
352 Canada 13378 C T 8545 8541 Thr4371Thr
353 Canada 13379 G 8492 8489
354 Canada 13380 T 8491 8488
355 Canada 13381 C 8491 8488
356 Canada 13382 T 8489 8486
357 Canada 13383 G 8489 8486
358 Canada 13384 C 8489 8485
359 Canada 13385 G 8489 8484
360 Canada 13386 G 8489 8484
361 Canada 13387 T 8489 8486
362 Canada 13388 A 8489 8486
363 Canada 13389 T 8489 8484
364 Canada 13390 G 8489 8484
365 Canada 13391 T 8489 8484
366 Canada 13392 G 8489 8486
367 Canada 13393 G 8489 8485
368 Canada 13394 A 8489 8484
369 Canada 13395 A 8489 8485
370 Canada 13396 A G 8489 8483 Lys4377Lys
371 Canada 13397 G 8489 8486
372 Canada 13398 G 8489 8488
373 Canada 13399 T 8489 8486
374 Canada 13400 T 8489 8488
375 Canada 13401 A 8488 8487
376 Canada 13402 T 8487 8486
377 Canada 13403 G 8487 8486
378 Canada 13404 G T 8487 8485 Gly4380Val
379 Canada 13405 C 8487 8486
380 Canada 13406 T 8487 8487
381 Canada 13407 G 8487 8487
382 Canada 13408 T 8487 8484
383 Canada 13409 A 8487 8484
384 Canada 13410 G 8487 8487
385 Canada 13411 T 8487 8485
386 Canada 13412 T 8487 8487
387 Canada 13413 G 8487 8487
388 Canada 13414 T 8487 8485
389 Canada 13415 G 8487 8487
390 Canada 13416 A 8487 8487
391 Canada 13417 T 8487 8487
392 Canada 13418 C 8487 8487
393 Canada 13419 A 8487 8487
394 Canada 13420 A 8487 8487
395 Canada 13421 C 8487 8486
396 Canada 13422 T 8487 8487
397 Canada 13423 C T 8487 8481 Leu4386Leu
398 Canada 13424 C 8487 8487
399 Canada 13425 G 8487 8487
400 Canada 13426 C T 8487 8486 Arg4387Arg
401 Canada 13427 G 8487 8487
402 Canada 13428 A 8487 8485
403 Canada 13429 A 8487 8487
404 Canada 13430 C T 8487 8485 Pro4389Ser
405 Canada 13431 C 8487 8486
406 Canada 13432 C G 8486 8485 Pro4389Pro
407 Canada 13433 A 8486 8486
408 Canada 13434 T 8486 8486
409 Canada 13435 G 8486 8486
410 Canada 13436 C 8486 8486
411 Canada 13437 T 8486 8484
412 Canada 13438 T 8486 8486
413 Canada 13439 C 8485 8485
414 Canada 13440 A 8485 8485
415 Canada 13441 G 8484 8484