National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                   1    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cameroon 13026 C 21 21
1 Cameroon 13027 T 21 21
2 Cameroon 13028 G 21 21
3 Cameroon 13029 G 21 21
4 Cameroon 13030 T 21 21
5 Cameroon 13031 A 21 21
6 Cameroon 13032 A 21 21
7 Cameroon 13033 T 21 21
8 Cameroon 13034 G 21 21
9 Cameroon 13035 C 21 21
10 Cameroon 13036 A 21 21
11 Cameroon 13037 A 21 21
12 Cameroon 13038 C 21 21
13 Cameroon 13039 A 21 21
14 Cameroon 13040 G 21 21
15 Cameroon 13041 A 21 21
16 Cameroon 13042 A 21 21
17 Cameroon 13043 G 21 21
18 Cameroon 13044 T 21 21
19 Cameroon 13045 G 21 21
20 Cameroon 13046 C 21 21
21 Cameroon 13047 C 21 21
22 Cameroon 13048 T 21 21
23 Cameroon 13049 G 21 21
24 Cameroon 13050 C 21 21
25 Cameroon 13051 C 21 21
26 Cameroon 13052 A 21 21
27 Cameroon 13053 A 21 21
28 Cameroon 13054 T 21 21
29 Cameroon 13055 T 21 21
30 Cameroon 13056 C 21 21
31 Cameroon 13057 A 21 21
32 Cameroon 13058 A 21 21
33 Cameroon 13059 C 21 21
34 Cameroon 13060 T 21 21
35 Cameroon 13061 G 21 21
36 Cameroon 13062 T 21 21
37 Cameroon 13063 A 21 21
38 Cameroon 13064 T 21 21
39 Cameroon 13065 T 21 21
40 Cameroon 13066 A 21 21
41 Cameroon 13067 T 21 21
42 Cameroon 13068 C 21 21
43 Cameroon 13069 T 21 21
44 Cameroon 13070 T 21 21
45 Cameroon 13071 T 21 21
46 Cameroon 13072 C 21 21
47 Cameroon 13073 T 21 21
48 Cameroon 13074 G 21 21
49 Cameroon 13075 T 21 21
50 Cameroon 13076 G 21 21
51 Cameroon 13077 C 21 21
52 Cameroon 13078 T 21 21
53 Cameroon 13079 T 21 21
54 Cameroon 13080 T 21 21
55 Cameroon 13081 T 21 21
56 Cameroon 13082 G 21 21
57 Cameroon 13083 C 21 21
58 Cameroon 13084 T 21 21
59 Cameroon 13085 G 21 21
60 Cameroon 13086 T 21 21
61 Cameroon 13087 A 21 21
62 Cameroon 13088 G 21 21
63 Cameroon 13089 A 21 21
64 Cameroon 13090 T 21 21
65 Cameroon 13091 G 21 20
66 Cameroon 13092 C 21 20
67 Cameroon 13093 T 21 20
68 Cameroon 13094 G 21 20
69 Cameroon 13095 C 21 20
70 Cameroon 13096 T 21 20
71 Cameroon 13097 A 21 20
72 Cameroon 13098 A 21 20
73 Cameroon 13099 A 21 20
74 Cameroon 13100 G 21 20
75 Cameroon 13101 C 21 20
76 Cameroon 13102 T 21 20
77 Cameroon 13103 T 21 20
78 Cameroon 13104 A 21 20
79 Cameroon 13105 C 21 20
80 Cameroon 13106 A 22 22
81 Cameroon 13107 A 22 22
82 Cameroon 13108 A 22 22
83 Cameroon 13109 G 22 22
84 Cameroon 13110 A 22 22
85 Cameroon 13111 T 22 22
86 Cameroon 13112 T 22 22
87 Cameroon 13113 A 22 22
88 Cameroon 13114 T 22 22
89 Cameroon 13115 C 22 22
90 Cameroon 13116 T 22 22
91 Cameroon 13117 A 22 22
92 Cameroon 13118 G 22 22
93 Cameroon 13119 C 22 22
94 Cameroon 13120 T 22 22
95 Cameroon 13121 A 22 22
96 Cameroon 13122 G 22 22
97 Cameroon 13123 T 22 22
98 Cameroon 13124 G 22 22
99 Cameroon 13125 G 22 22
100 Cameroon 13126 G 22 22
101 Cameroon 13127 G 22 22
102 Cameroon 13128 G 22 22
103 Cameroon 13129 A 22 22
104 Cameroon 13130 C 22 22
105 Cameroon 13131 A 22 22
106 Cameroon 13132 A 22 22
107 Cameroon 13133 C 22 22
108 Cameroon 13134 C 22 22
109 Cameroon 13135 A 22 22
110 Cameroon 13136 A 22 22
111 Cameroon 13137 T 22 22
112 Cameroon 13138 C 22 22
113 Cameroon 13139 A 22 22
114 Cameroon 13140 C 22 22
115 Cameroon 13141 T 22 22
116 Cameroon 13142 A 22 22
117 Cameroon 13143 A 22 22
118 Cameroon 13144 T 22 22
119 Cameroon 13145 T 22 22
120 Cameroon 13146 G 22 22
121 Cameroon 13147 T 22 22
122 Cameroon 13148 G 22 22
123 Cameroon 13149 T 22 22
124 Cameroon 13150 T 22 22
125 Cameroon 13151 A 22 22
126 Cameroon 13152 A 22 22
127 Cameroon 13153 G 22 22
128 Cameroon 13154 A 22 22
129 Cameroon 13155 T 22 22
130 Cameroon 13156 G 22 22
131 Cameroon 13157 T 22 22
132 Cameroon 13158 T 22 22
133 Cameroon 13159 G 22 22
134 Cameroon 13160 T 22 22
135 Cameroon 13161 G 22 22
136 Cameroon 13162 T 22 22
137 Cameroon 13163 A 22 22
138 Cameroon 13164 C 22 22
139 Cameroon 13165 A 22 22
140 Cameroon 13166 C 22 22
141 Cameroon 13167 A 22 22
142 Cameroon 13168 C 22 22
143 Cameroon 13169 A 22 22
144 Cameroon 13170 C 22 22
145 Cameroon 13171 T 22 22
146 Cameroon 13172 G 22 22
147 Cameroon 13173 G 22 22
148 Cameroon 13174 T 22 22
149 Cameroon 13175 A 22 22
150 Cameroon 13176 C 22 22
151 Cameroon 13177 T 22 22
152 Cameroon 13178 G 22 22
153 Cameroon 13179 G 21 21
154 Cameroon 13180 T 21 21
155 Cameroon 13181 C 21 21
156 Cameroon 13182 A 21 21
157 Cameroon 13183 G 21 21
158 Cameroon 13184 G 21 21
159 Cameroon 13185 C 21 21
160 Cameroon 13186 A 21 21
161 Cameroon 13187 A 21 21
162 Cameroon 13188 T 21 21
163 Cameroon 13189 A 21 21
164 Cameroon 13190 A 21 21
165 Cameroon 13191 C 21 21
166 Cameroon 13192 A 21 21
167 Cameroon 13193 G 21 21
168 Cameroon 13194 T 21 21
169 Cameroon 13195 T 21 21
170 Cameroon 13196 A 21 21
171 Cameroon 13197 C 21 21
172 Cameroon 13198 A 21 21
173 Cameroon 13199 C 21 21
174 Cameroon 13200 C 20 20
175 Cameroon 13201 G 20 20
176 Cameroon 13202 G 20 20
177 Cameroon 13203 A 20 20
178 Cameroon 13204 A 20 20
179 Cameroon 13205 G 20 20
180 Cameroon 13206 C 20 20
181 Cameroon 13207 C 20 20
182 Cameroon 13208 A 20 20
183 Cameroon 13209 A 20 20
184 Cameroon 13210 T 20 20
185 Cameroon 13211 A 20 20
186 Cameroon 13212 T 20 20
187 Cameroon 13213 G 20 20
188 Cameroon 13214 G 20 20
189 Cameroon 13215 A 20 20
190 Cameroon 13216 T 20 20
191 Cameroon 13217 C 20 20
192 Cameroon 13218 A 20 20
193 Cameroon 13219 A 20 20
194 Cameroon 13220 G 20 20
195 Cameroon 13221 A 20 20
196 Cameroon 13222 A 20 20
197 Cameroon 13223 T 20 20
198 Cameroon 13224 C 20 20
199 Cameroon 13225 C 20 20
200 Cameroon 13226 T 20 20
201 Cameroon 13227 T 20 20
202 Cameroon 13228 T 20 20
203 Cameroon 13229 G 20 20
204 Cameroon 13230 G 20 20
205 Cameroon 13231 T 20 20
206 Cameroon 13232 G 20 20
207 Cameroon 13233 G 20 20
208 Cameroon 13234 T 20 20
209 Cameroon 13235 G 20 20
210 Cameroon 13236 C 20 20
211 Cameroon 13237 A 20 20
212 Cameroon 13238 T 20 20
213 Cameroon 13239 C 20 20
214 Cameroon 13240 G 20 20
215 Cameroon 13241 T 20 20
216 Cameroon 13242 G 20 20
217 Cameroon 13243 T 20 20
218 Cameroon 13244 T 20 20
219 Cameroon 13245 G 20 20
220 Cameroon 13246 T 20 20
221 Cameroon 13247 C 20 20
222 Cameroon 13248 T 20 20
223 Cameroon 13249 G 20 20
224 Cameroon 13250 T 20 20
225 Cameroon 13251 A 20 20
226 Cameroon 13252 C 20 20
227 Cameroon 13253 T 20 20
228 Cameroon 13254 G 20 20
229 Cameroon 13255 C 20 20
230 Cameroon 13256 C 20 20
231 Cameroon 13257 G 20 20
232 Cameroon 13258 T 20 20
233 Cameroon 13259 T 20 20
234 Cameroon 13260 G 20 20
235 Cameroon 13261 C 20 20
236 Cameroon 13262 C 20 20
237 Cameroon 13263 A 20 20
238 Cameroon 13264 C 20 20
239 Cameroon 13265 A 20 20
240 Cameroon 13266 T 20 20
241 Cameroon 13267 A 20 20
242 Cameroon 13268 G 20 20
243 Cameroon 13269 A 20 20
244 Cameroon 13270 T 20 20
245 Cameroon 13271 C 20 20
246 Cameroon 13272 A 20 20
247 Cameroon 13273 T 20 20
248 Cameroon 13274 C 20 20
249 Cameroon 13275 C 20 20
250 Cameroon 13276 A 20 20
251 Cameroon 13277 A 20 20
252 Cameroon 13278 A 20 20
253 Cameroon 13279 T 20 20
254 Cameroon 13280 C 20 20
255 Cameroon 13281 C 20 20
256 Cameroon 13282 T 20 20
257 Cameroon 13283 A 20 20
258 Cameroon 13284 A 20 20
259 Cameroon 13285 A 20 20
260 Cameroon 13286 G 20 20
261 Cameroon 13287 G 20 20
262 Cameroon 13288 A 20 20
263 Cameroon 13289 T 20 20
264 Cameroon 13290 T 20 20
265 Cameroon 13291 T 20 20
266 Cameroon 13292 T 20 20
267 Cameroon 13293 G 20 20
268 Cameroon 13294 T 20 20
269 Cameroon 13295 G 20 20
270 Cameroon 13296 A 20 20
271 Cameroon 13297 C 20 20
272 Cameroon 13298 T 20 20
273 Cameroon 13299 T 20 20
274 Cameroon 13300 A 20 20
275 Cameroon 13301 A 20 20
276 Cameroon 13302 A 20 20
277 Cameroon 13303 A 20 20
278 Cameroon 13304 G 20 20
279 Cameroon 13305 G 20 20
280 Cameroon 13306 T 20 20
281 Cameroon 13307 A 20 20
282 Cameroon 13308 A 20 20
283 Cameroon 13309 G 20 20
284 Cameroon 13310 T 20 20
285 Cameroon 13311 A 20 20
286 Cameroon 13312 T 20 20
287 Cameroon 13313 G 20 20
288 Cameroon 13314 T 20 20
289 Cameroon 13315 A 20 20
290 Cameroon 13316 C 20 20
291 Cameroon 13317 A 20 20
292 Cameroon 13318 A 20 20
293 Cameroon 13319 A 20 20
294 Cameroon 13320 T 20 20
295 Cameroon 13321 A 20 20
296 Cameroon 13322 C 20 20
297 Cameroon 13323 C 20 20
298 Cameroon 13324 T 20 20
299 Cameroon 13325 A 20 20
300 Cameroon 13326 C 20 20
301 Cameroon 13327 A 20 20
302 Cameroon 13328 A 20 20
303 Cameroon 13329 C 20 20
304 Cameroon 13330 T 20 20
305 Cameroon 13331 T 20 20
306 Cameroon 13332 G 20 20
307 Cameroon 13333 T 20 20
308 Cameroon 13334 G 20 20
309 Cameroon 13335 C 20 20
310 Cameroon 13336 T 20 20
311 Cameroon 13337 A 20 20
312 Cameroon 13338 A 20 20
313 Cameroon 13339 T 20 20
314 Cameroon 13340 G 20 20
315 Cameroon 13341 A 20 20
316 Cameroon 13342 C 20 20
317 Cameroon 13343 C 20 20
318 Cameroon 13344 C 20 20
319 Cameroon 13345 T 20 20
320 Cameroon 13346 G 20 20
321 Cameroon 13347 T 20 20
322 Cameroon 13348 G T 20 19 Val4361Val
323 Cameroon 13349 G 20 20
324 Cameroon 13350 G 20 20
325 Cameroon 13351 T 20 20
326 Cameroon 13352 T 20 20
327 Cameroon 13353 T 20 20
328 Cameroon 13354 T 20 20
329 Cameroon 13355 A 20 20
330 Cameroon 13356 C 20 20
331 Cameroon 13357 A 20 20
332 Cameroon 13358 C 20 20
333 Cameroon 13359 T 20 20
334 Cameroon 13360 T 20 20
335 Cameroon 13361 A 20 20
336 Cameroon 13362 A 20 20
337 Cameroon 13363 A 20 20
338 Cameroon 13364 A 20 20
339 Cameroon 13365 A 20 20
340 Cameroon 13366 C 20 20
341 Cameroon 13367 A 20 20
342 Cameroon 13368 C 20 20
343 Cameroon 13369 A 20 20
344 Cameroon 13370 G 20 20
345 Cameroon 13371 T 20 20
346 Cameroon 13372 C 20 20
347 Cameroon 13373 T 20 20
348 Cameroon 13374 G 20 20
349 Cameroon 13375 T 20 20
350 Cameroon 13376 A 20 20
351 Cameroon 13377 C 20 20
352 Cameroon 13378 C 20 20
353 Cameroon 13379 G 20 20
354 Cameroon 13380 T 20 20
355 Cameroon 13381 C 20 20
356 Cameroon 13382 T 20 20
357 Cameroon 13383 G 20 20
358 Cameroon 13384 C 20 20
359 Cameroon 13385 G 20 20
360 Cameroon 13386 G 20 20
361 Cameroon 13387 T 20 20
362 Cameroon 13388 A 20 20
363 Cameroon 13389 T 20 20
364 Cameroon 13390 G 20 20
365 Cameroon 13391 T 20 20
366 Cameroon 13392 G 20 20
367 Cameroon 13393 G 20 20
368 Cameroon 13394 A 20 20
369 Cameroon 13395 A 19 19
370 Cameroon 13396 A 19 19
371 Cameroon 13397 G 19 19
372 Cameroon 13398 G 19 19
373 Cameroon 13399 T 19 19
374 Cameroon 13400 T 19 19
375 Cameroon 13401 A 19 19
376 Cameroon 13402 T 19 19
377 Cameroon 13403 G 19 19
378 Cameroon 13404 G 19 19
379 Cameroon 13405 C 19 19
380 Cameroon 13406 T 18 18
381 Cameroon 13407 G 18 18
382 Cameroon 13408 T 18 18
383 Cameroon 13409 A 18 18
384 Cameroon 13410 G 18 18
385 Cameroon 13411 T 18 18
386 Cameroon 13412 T 18 18
387 Cameroon 13413 G 18 18
388 Cameroon 13414 T 18 18
389 Cameroon 13415 G 18 18
390 Cameroon 13416 A 18 18
391 Cameroon 13417 T 18 18
392 Cameroon 13418 C 18 18
393 Cameroon 13419 A 18 18
394 Cameroon 13420 A 18 18
395 Cameroon 13421 C 18 18
396 Cameroon 13422 T 18 18
397 Cameroon 13423 C 18 18
398 Cameroon 13424 C 18 18
399 Cameroon 13425 G 18 18
400 Cameroon 13426 C 18 18
401 Cameroon 13427 G 18 18
402 Cameroon 13428 A 18 18
403 Cameroon 13429 A 18 18
404 Cameroon 13430 C 18 18
405 Cameroon 13431 C 18 18
406 Cameroon 13432 C 18 18
407 Cameroon 13433 A 18 18
408 Cameroon 13434 T 18 18
409 Cameroon 13435 G 18 18
410 Cameroon 13436 C 18 18
411 Cameroon 13437 T 18 18
412 Cameroon 13438 T 18 18
413 Cameroon 13439 C 18 18
414 Cameroon 13440 A 18 18
415 Cameroon 13441 G 18 18