National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 3                                 1    
C   39   2                                    
D   21                                        
E   12       1                                
F   15                                        
G   39           4                            
H   9                                        
I   12                                        
K   24                                        
L   24                   2                    
M   12                                        
N   21                                        
P   24                         1              
Q   18                                        
R   6                                        
S   18                                        
T   39                                 1      
V   27                                        
W   3                                        
Y   15                                       1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Cambodia 13026 C 4 4
1 Cambodia 13027 T 4 4
2 Cambodia 13028 G 4 4
3 Cambodia 13029 G 4 4
4 Cambodia 13030 T C 4 2 Gly4255Gly
5 Cambodia 13031 A 4 4
6 Cambodia 13032 A 4 4
7 Cambodia 13033 T 4 4
8 Cambodia 13034 G 4 4
9 Cambodia 13035 C 4 4
10 Cambodia 13036 A T 4 2 Ala4257Ala
11 Cambodia 13037 A 4 4
12 Cambodia 13038 C 4 4
13 Cambodia 13039 A 4 4
14 Cambodia 13040 G 4 4
15 Cambodia 13041 A 4 4
16 Cambodia 13042 A G 4 2 Glu4259Glu
17 Cambodia 13043 G 4 4
18 Cambodia 13044 T 4 4
19 Cambodia 13045 G 4 4
20 Cambodia 13046 C 4 4
21 Cambodia 13047 C 4 4
22 Cambodia 13048 T 4 4
23 Cambodia 13049 G 4 4
24 Cambodia 13050 C 4 4
25 Cambodia 13051 C 4 4
26 Cambodia 13052 A 4 4
27 Cambodia 13053 A 4 4
28 Cambodia 13054 T 4 4
29 Cambodia 13055 T 4 4
30 Cambodia 13056 C 4 4
31 Cambodia 13057 A 4 4
32 Cambodia 13058 A 4 4
33 Cambodia 13059 C 4 4
34 Cambodia 13060 T 4 4
35 Cambodia 13061 G 4 4
36 Cambodia 13062 T 4 4
37 Cambodia 13063 A 4 4
38 Cambodia 13064 T C 4 2 Leu4267Leu
39 Cambodia 13065 T 4 4
40 Cambodia 13066 A 4 4
41 Cambodia 13067 T 4 4
42 Cambodia 13068 C 4 4
43 Cambodia 13069 T 4 4
44 Cambodia 13070 T 4 4
45 Cambodia 13071 T 4 4
46 Cambodia 13072 C 4 4
47 Cambodia 13073 T 4 4
48 Cambodia 13074 G 4 4
49 Cambodia 13075 T 4 4
50 Cambodia 13076 G 4 4
51 Cambodia 13077 C 4 4
52 Cambodia 13078 T 4 4
53 Cambodia 13079 T 4 4
54 Cambodia 13080 T 4 4
55 Cambodia 13081 T 4 4
56 Cambodia 13082 G 4 4
57 Cambodia 13083 C 4 4
58 Cambodia 13084 T 4 4
59 Cambodia 13085 G 4 4
60 Cambodia 13086 T 4 4
61 Cambodia 13087 A 4 4
62 Cambodia 13088 G 4 4
63 Cambodia 13089 A 4 4
64 Cambodia 13090 T 4 4
65 Cambodia 13091 G 4 4
66 Cambodia 13092 C 4 4
67 Cambodia 13093 T 4 4
68 Cambodia 13094 G 4 4
69 Cambodia 13095 C 4 4
70 Cambodia 13096 T 4 4
71 Cambodia 13097 A 4 4
72 Cambodia 13098 A 4 4
73 Cambodia 13099 A 4 4
74 Cambodia 13100 G 4 4
75 Cambodia 13101 C 4 4
76 Cambodia 13102 T C 4 2 Ala4279Ala
77 Cambodia 13103 T 4 4
78 Cambodia 13104 A 4 4
79 Cambodia 13105 C 4 4
80 Cambodia 13106 A 4 4
81 Cambodia 13107 A 4 4
82 Cambodia 13108 A 4 4
83 Cambodia 13109 G 4 4
84 Cambodia 13110 A 4 4
85 Cambodia 13111 T 4 4
86 Cambodia 13112 T 4 4
87 Cambodia 13113 A 4 4
88 Cambodia 13114 T C 4 2 Tyr4283Tyr
89 Cambodia 13115 C T 4 2 Leu4284Leu
90 Cambodia 13116 T 4 4
91 Cambodia 13117 A 4 4
92 Cambodia 13118 G 4 4
93 Cambodia 13119 C 4 4
94 Cambodia 13120 T 4 4
95 Cambodia 13121 A 4 4
96 Cambodia 13122 G 4 4
97 Cambodia 13123 T 4 4
98 Cambodia 13124 G 4 4
99 Cambodia 13125 G 4 4
100 Cambodia 13126 G A 4 2 Gly4287Gly
101 Cambodia 13127 G 4 4
102 Cambodia 13128 G 4 4
103 Cambodia 13129 A 4 4
104 Cambodia 13130 C 4 4
105 Cambodia 13131 A 4 4
106 Cambodia 13132 A 4 4
107 Cambodia 13133 C 4 4
108 Cambodia 13134 C 4 4
109 Cambodia 13135 A 4 4
110 Cambodia 13136 A 4 4
111 Cambodia 13137 T 4 4
112 Cambodia 13138 C 4 4
113 Cambodia 13139 A 4 4
114 Cambodia 13140 C 4 4
115 Cambodia 13141 T 4 4
116 Cambodia 13142 A 4 4
117 Cambodia 13143 A 4 4
118 Cambodia 13144 T 4 4
119 Cambodia 13145 T 4 4
120 Cambodia 13146 G 4 4
121 Cambodia 13147 T 4 4
122 Cambodia 13148 G 4 4
123 Cambodia 13149 T 4 4
124 Cambodia 13150 T 4 4
125 Cambodia 13151 A 4 4
126 Cambodia 13152 A 4 4
127 Cambodia 13153 G 4 4
128 Cambodia 13154 A 4 4
129 Cambodia 13155 T 4 4
130 Cambodia 13156 G 4 4
131 Cambodia 13157 T 4 4
132 Cambodia 13158 T 4 4
133 Cambodia 13159 G 4 4
134 Cambodia 13160 T 4 4
135 Cambodia 13161 G 4 4
136 Cambodia 13162 T 4 4
137 Cambodia 13163 A 4 4
138 Cambodia 13164 C 4 4
139 Cambodia 13165 A 4 4
140 Cambodia 13166 C 4 4
141 Cambodia 13167 A 4 4
142 Cambodia 13168 C 4 4
143 Cambodia 13169 A 4 4
144 Cambodia 13170 C 4 4
145 Cambodia 13171 T 4 4
146 Cambodia 13172 G 4 4
147 Cambodia 13173 G 4 4
148 Cambodia 13174 T 4 4
149 Cambodia 13175 A 4 4
150 Cambodia 13176 C 4 4
151 Cambodia 13177 T 4 4
152 Cambodia 13178 G 4 4
153 Cambodia 13179 G 4 4
154 Cambodia 13180 T C 4 2 Gly4305Gly
155 Cambodia 13181 C 4 4
156 Cambodia 13182 A 4 4
157 Cambodia 13183 G 4 4
158 Cambodia 13184 G 4 4
159 Cambodia 13185 C 4 4
160 Cambodia 13186 A 4 4
161 Cambodia 13187 A 4 4
162 Cambodia 13188 T 4 4
163 Cambodia 13189 A 4 4
164 Cambodia 13190 A 4 4
165 Cambodia 13191 C 4 4
166 Cambodia 13192 A 4 4
167 Cambodia 13193 G 4 4
168 Cambodia 13194 T 4 4
169 Cambodia 13195 T 4 4
170 Cambodia 13196 A 4 4
171 Cambodia 13197 C 4 4
172 Cambodia 13198 A 4 4
173 Cambodia 13199 C 4 4
174 Cambodia 13200 C 4 4
175 Cambodia 13201 G T 4 2 Pro4312Pro
176 Cambodia 13202 G 4 4
177 Cambodia 13203 A 4 4
178 Cambodia 13204 A 4 4
179 Cambodia 13205 G 4 4
180 Cambodia 13206 C 4 4
181 Cambodia 13207 C T 4 2 Ala4314Ala
182 Cambodia 13208 A 4 4
183 Cambodia 13209 A 4 4
184 Cambodia 13210 T 4 4
185 Cambodia 13211 A 4 4
186 Cambodia 13212 T 4 4
187 Cambodia 13213 G 4 4
188 Cambodia 13214 G 4 4
189 Cambodia 13215 A 4 4
190 Cambodia 13216 T 4 4
191 Cambodia 13217 C 4 4
192 Cambodia 13218 A 4 4
193 Cambodia 13219 A 4 4
194 Cambodia 13220 G 4 4
195 Cambodia 13221 A 4 4
196 Cambodia 13222 A 4 4
197 Cambodia 13223 T 4 4
198 Cambodia 13224 C 4 4
199 Cambodia 13225 C 4 4
200 Cambodia 13226 T 4 4
201 Cambodia 13227 T 4 4
202 Cambodia 13228 T 4 4
203 Cambodia 13229 G 4 4
204 Cambodia 13230 G 4 4
205 Cambodia 13231 T 4 4
206 Cambodia 13232 G 4 4
207 Cambodia 13233 G 4 4
208 Cambodia 13234 T 4 4
209 Cambodia 13235 G 4 4
210 Cambodia 13236 C 4 4
211 Cambodia 13237 A 4 4
212 Cambodia 13238 T 4 4
213 Cambodia 13239 C 4 4
214 Cambodia 13240 G 4 4
215 Cambodia 13241 T 4 4
216 Cambodia 13242 G 4 4
217 Cambodia 13243 T 4 4
218 Cambodia 13244 T 4 4
219 Cambodia 13245 G 4 4
220 Cambodia 13246 T C 4 2 Cys4327Cys
221 Cambodia 13247 C 4 4
222 Cambodia 13248 T 4 4
223 Cambodia 13249 G 4 4
224 Cambodia 13250 T 4 4
225 Cambodia 13251 A 4 4
226 Cambodia 13252 C 4 4
227 Cambodia 13253 T 4 4
228 Cambodia 13254 G 4 4
229 Cambodia 13255 C T 4 2 Cys4330Cys
230 Cambodia 13256 C 4 4
231 Cambodia 13257 G 4 4
232 Cambodia 13258 T 4 4
233 Cambodia 13259 T 4 4
234 Cambodia 13260 G 4 4
235 Cambodia 13261 C 4 4
236 Cambodia 13262 C 4 4
237 Cambodia 13263 A 4 4
238 Cambodia 13264 C 4 4
239 Cambodia 13265 A 4 4
240 Cambodia 13266 T 4 4
241 Cambodia 13267 A 4 4
242 Cambodia 13268 G 4 4
243 Cambodia 13269 A 4 4
244 Cambodia 13270 T 4 4
245 Cambodia 13271 C 4 4
246 Cambodia 13272 A 4 4
247 Cambodia 13273 T 4 4
248 Cambodia 13274 C 4 4
249 Cambodia 13275 C 4 4
250 Cambodia 13276 A 4 4
251 Cambodia 13277 A 4 4
252 Cambodia 13278 A 4 4
253 Cambodia 13279 T 4 4
254 Cambodia 13280 C 4 4
255 Cambodia 13281 C 4 4
256 Cambodia 13282 T 4 4
257 Cambodia 13283 A 4 4
258 Cambodia 13284 A 4 4
259 Cambodia 13285 A 4 4
260 Cambodia 13286 G 4 4
261 Cambodia 13287 G 4 4
262 Cambodia 13288 A G 4 2 Gly4341Gly
263 Cambodia 13289 T 4 4
264 Cambodia 13290 T 4 4
265 Cambodia 13291 T 4 4
266 Cambodia 13292 T 4 4
267 Cambodia 13293 G 4 4
268 Cambodia 13294 T 4 4
269 Cambodia 13295 G 4 4
270 Cambodia 13296 A 4 4
271 Cambodia 13297 C 4 4
272 Cambodia 13298 T 4 4
273 Cambodia 13299 T 4 4
274 Cambodia 13300 A 4 4
275 Cambodia 13301 A 4 4
276 Cambodia 13302 A 4 4
277 Cambodia 13303 A 4 4
278 Cambodia 13304 G 4 4
279 Cambodia 13305 G 4 4
280 Cambodia 13306 T 4 4
281 Cambodia 13307 A 4 4
282 Cambodia 13308 A 4 4
283 Cambodia 13309 G 4 4
284 Cambodia 13310 T 4 4
285 Cambodia 13311 A 4 4
286 Cambodia 13312 T 4 4
287 Cambodia 13313 G 4 4
288 Cambodia 13314 T 4 4
289 Cambodia 13315 A 4 4
290 Cambodia 13316 C 4 4
291 Cambodia 13317 A 4 4
292 Cambodia 13318 A 4 4
293 Cambodia 13319 A 4 4
294 Cambodia 13320 T 4 4
295 Cambodia 13321 A 4 4
296 Cambodia 13322 C 4 4
297 Cambodia 13323 C 4 4
298 Cambodia 13324 T 4 4
299 Cambodia 13325 A 4 4
300 Cambodia 13326 C 4 4
301 Cambodia 13327 A 4 4
302 Cambodia 13328 A 4 4
303 Cambodia 13329 C 4 4
304 Cambodia 13330 T 4 4
305 Cambodia 13331 T 4 4
306 Cambodia 13332 G 4 4
307 Cambodia 13333 T 4 4
308 Cambodia 13334 G 4 4
309 Cambodia 13335 C T 4 2 Ala4357Val
310 Cambodia 13336 T 4 4
311 Cambodia 13337 A 4 4
312 Cambodia 13338 A 4 4
313 Cambodia 13339 T 4 4
314 Cambodia 13340 G 4 4
315 Cambodia 13341 A 4 4
316 Cambodia 13342 C 4 4
317 Cambodia 13343 C 4 4
318 Cambodia 13344 C 4 4
319 Cambodia 13345 T 4 4
320 Cambodia 13346 G 4 4
321 Cambodia 13347 T 4 4
322 Cambodia 13348 G 4 4
323 Cambodia 13349 G 4 4
324 Cambodia 13350 G 4 4
325 Cambodia 13351 T 4 4
326 Cambodia 13352 T 4 4
327 Cambodia 13353 T 4 4
328 Cambodia 13354 T 4 4
329 Cambodia 13355 A 4 4
330 Cambodia 13356 C 4 4
331 Cambodia 13357 A 4 4
332 Cambodia 13358 C 4 4
333 Cambodia 13359 T 4 4
334 Cambodia 13360 T 4 4
335 Cambodia 13361 A 4 4
336 Cambodia 13362 A 4 4
337 Cambodia 13363 A 4 4
338 Cambodia 13364 A 4 4
339 Cambodia 13365 A 4 4
340 Cambodia 13366 C 4 4
341 Cambodia 13367 A 4 4
342 Cambodia 13368 C 4 4
343 Cambodia 13369 A 4 4
344 Cambodia 13370 G 4 4
345 Cambodia 13371 T 4 4
346 Cambodia 13372 C 4 4
347 Cambodia 13373 T 4 4
348 Cambodia 13374 G 4 4
349 Cambodia 13375 T 4 4
350 Cambodia 13376 A 4 4
351 Cambodia 13377 C 4 4
352 Cambodia 13378 C T 4 2 Thr4371Thr
353 Cambodia 13379 G 4 4
354 Cambodia 13380 T 4 4
355 Cambodia 13381 C 4 4
356 Cambodia 13382 T 4 4
357 Cambodia 13383 G 4 4
358 Cambodia 13384 C 4 4
359 Cambodia 13385 G 4 4
360 Cambodia 13386 G 4 4
361 Cambodia 13387 T 4 4
362 Cambodia 13388 A 4 4
363 Cambodia 13389 T 4 4
364 Cambodia 13390 G 4 4
365 Cambodia 13391 T 4 4
366 Cambodia 13392 G 4 4
367 Cambodia 13393 G 4 4
368 Cambodia 13394 A 4 4
369 Cambodia 13395 A 4 4
370 Cambodia 13396 A 4 4
371 Cambodia 13397 G 4 4
372 Cambodia 13398 G 4 4
373 Cambodia 13399 T 4 4
374 Cambodia 13400 T 4 4
375 Cambodia 13401 A 4 4
376 Cambodia 13402 T 4 4
377 Cambodia 13403 G 4 4
378 Cambodia 13404 G 4 4
379 Cambodia 13405 C 4 4
380 Cambodia 13406 T 4 4
381 Cambodia 13407 G 4 4
382 Cambodia 13408 T 4 4
383 Cambodia 13409 A 4 4
384 Cambodia 13410 G 4 4
385 Cambodia 13411 T 4 4
386 Cambodia 13412 T 4 4
387 Cambodia 13413 G 4 4
388 Cambodia 13414 T 4 4
389 Cambodia 13415 G 4 4
390 Cambodia 13416 A 4 4
391 Cambodia 13417 T 4 4
392 Cambodia 13418 C 4 4
393 Cambodia 13419 A 4 4
394 Cambodia 13420 A 4 4
395 Cambodia 13421 C 4 4
396 Cambodia 13422 T 4 4
397 Cambodia 13423 C 4 4
398 Cambodia 13424 C 4 4
399 Cambodia 13425 G 4 4
400 Cambodia 13426 C 4 4
401 Cambodia 13427 G 4 4
402 Cambodia 13428 A 4 4
403 Cambodia 13429 A 4 4
404 Cambodia 13430 C 4 4
405 Cambodia 13431 C 4 4
406 Cambodia 13432 C 4 4
407 Cambodia 13433 A 4 4
408 Cambodia 13434 T 4 4
409 Cambodia 13435 G 4 4
410 Cambodia 13436 C 4 4
411 Cambodia 13437 T 4 4
412 Cambodia 13438 T 4 4
413 Cambodia 13439 C 4 4
414 Cambodia 13440 A 4 4
415 Cambodia 13441 G 4 4