National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 2                                 2    
C   39   2                                    
D   21     1                                 1
E   12       1                                
F   15                   1                    
G   39                               1        
H   9             1                          
I   12               1                        
K   24                       1     3          
L   24         1         1                    
M   12                                        
N   21                                       1
P   24                         1     1        
Q   18                                        
R   6                                        
S   18                               2        
T   39               4                        
V   27                                   3    
W   3                                        
Y   15                                       1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Brazil 13026 C 2188 2188
1 Brazil 13027 T 2188 2188
2 Brazil 13028 G 2189 2189
3 Brazil 13029 G 2189 2189
4 Brazil 13030 T 2192 2192
5 Brazil 13031 A 2192 2192
6 Brazil 13032 A 2192 2192
7 Brazil 13033 T 2192 2192
8 Brazil 13034 G 2192 2192
9 Brazil 13035 C 2192 2192
10 Brazil 13036 A 2192 2192
11 Brazil 13037 A 2192 2192
12 Brazil 13038 C 2192 2192
13 Brazil 13039 A 2193 2193
14 Brazil 13040 G 2193 2193
15 Brazil 13041 A 2193 2193
16 Brazil 13042 A 2193 2193
17 Brazil 13043 G 2193 2193
18 Brazil 13044 T 2193 2193
19 Brazil 13045 G T 2193 2191 Val4260Val
20 Brazil 13046 C T 2193 2191 Pro4261Ser
21 Brazil 13047 C 2193 2193
22 Brazil 13048 T 2193 2193
23 Brazil 13049 G 2193 2193
24 Brazil 13050 C 2193 2193
25 Brazil 13051 C T 2193 2192 Ala4262Ala
26 Brazil 13052 A 2193 2193
27 Brazil 13053 A 2193 2193
28 Brazil 13054 T 2193 2193
29 Brazil 13055 T 2193 2193
30 Brazil 13056 C 2193 2193
31 Brazil 13057 A G 2193 2192 Ser4264Ser
32 Brazil 13058 A 2193 2193
33 Brazil 13059 C T 2193 2191 Thr4265Ile
34 Brazil 13060 T 2193 2193
35 Brazil 13061 G 2193 2193
36 Brazil 13062 T 2193 2193
37 Brazil 13063 A G 2193 2192 Val4266Val
38 Brazil 13064 T 2193 2193
39 Brazil 13065 T 2193 2193
40 Brazil 13066 A 2193 2193
41 Brazil 13067 T 2193 2193
42 Brazil 13068 C 2193 2193
43 Brazil 13069 T 2193 2193
44 Brazil 13070 T 2193 2193
45 Brazil 13071 T 2193 2192
46 Brazil 13072 C 2193 2192
47 Brazil 13073 T 2193 2192
48 Brazil 13074 G 2193 2192
49 Brazil 13075 T 2193 2193
50 Brazil 13076 G 2193 2193
51 Brazil 13077 C 2193 2192
52 Brazil 13078 T 2193 2193
53 Brazil 13079 T 2193 2193
54 Brazil 13080 T 2193 2193
55 Brazil 13081 T 2193 2193
56 Brazil 13082 G 2193 2193
57 Brazil 13083 C 2193 2193
58 Brazil 13084 T 2193 2193
59 Brazil 13085 G 2193 2193
60 Brazil 13086 T 2194 2194
61 Brazil 13087 A 2194 2194
62 Brazil 13088 G 2194 2194
63 Brazil 13089 A 2194 2194
64 Brazil 13090 T 2194 2194
65 Brazil 13091 G 2194 2194
66 Brazil 13092 C 2194 2193
67 Brazil 13093 T 2194 2194
68 Brazil 13094 G 2194 2194
69 Brazil 13095 C T 2194 2193 Ala4277Val
70 Brazil 13096 T 2194 2194
71 Brazil 13097 A 2194 2194
72 Brazil 13098 A G 2194 2193 Lys4278Arg
73 Brazil 13099 A 2194 2194
74 Brazil 13100 G 2194 2194
75 Brazil 13101 C 2194 2194
76 Brazil 13102 T 2194 2194
77 Brazil 13103 T 2194 2194
78 Brazil 13104 A 2194 2194
79 Brazil 13105 C 2194 2194
80 Brazil 13106 A 2194 2194
81 Brazil 13107 A 2194 2194
82 Brazil 13108 A 2194 2194
83 Brazil 13109 G 2194 2194
84 Brazil 13110 A 2194 2194
85 Brazil 13111 T 2194 2194
86 Brazil 13112 T 2194 2194
87 Brazil 13113 A 2194 2194
88 Brazil 13114 T 2194 2194
89 Brazil 13115 C T 2194 2192 Leu4284Leu
90 Brazil 13116 T 2194 2194
91 Brazil 13117 A 2194 2194
92 Brazil 13118 G 2194 2194
93 Brazil 13119 C T 2194 2193 Ala4285Val
94 Brazil 13120 T 2194 2194
95 Brazil 13121 A 2194 2194
96 Brazil 13122 G 2194 2194
97 Brazil 13123 T 2194 2194
98 Brazil 13124 G 2194 2189
99 Brazil 13125 G 2194 2194
100 Brazil 13126 G 2194 2194
101 Brazil 13127 G 2194 2194
102 Brazil 13128 G 2194 2194
103 Brazil 13129 A 2194 2194
104 Brazil 13130 C 2194 2194
105 Brazil 13131 A 2194 2194
106 Brazil 13132 A 2194 2194
107 Brazil 13133 C 2194 2194
108 Brazil 13134 C 2194 2194
109 Brazil 13135 A 2193 2193
110 Brazil 13136 A 2193 2193
111 Brazil 13137 T 2193 2193
112 Brazil 13138 C T 2193 2192 Ile4291Ile
113 Brazil 13139 A 2193 2193
114 Brazil 13140 C 2193 2193
115 Brazil 13141 T 2193 2193
116 Brazil 13142 A 2193 2193
117 Brazil 13143 A 2193 2193
118 Brazil 13144 T 2193 2193
119 Brazil 13145 T 2193 2193
120 Brazil 13146 G 2193 2193
121 Brazil 13147 T 2193 2193
122 Brazil 13148 G 2193 2193
123 Brazil 13149 T 2193 2193
124 Brazil 13150 T 2193 2193
125 Brazil 13151 A 2193 2193
126 Brazil 13152 A 2193 2193
127 Brazil 13153 G 2193 2193
128 Brazil 13154 A 2193 2193
129 Brazil 13155 T 2193 2193
130 Brazil 13156 G 2193 2193
131 Brazil 13157 T 2193 2193
132 Brazil 13158 T 2193 2193
133 Brazil 13159 G 2194 2194
134 Brazil 13160 T 2194 2194
135 Brazil 13161 G 2194 2194
136 Brazil 13162 T 2194 2194
137 Brazil 13163 A 2194 2194
138 Brazil 13164 C 2194 2194
139 Brazil 13165 A 2194 2194
140 Brazil 13166 C 2194 2194
141 Brazil 13167 A 2194 2194
142 Brazil 13168 C T 2194 2193 His4301His
143 Brazil 13169 A 2194 2194
144 Brazil 13170 C T 2194 2193 Thr4302Ile
145 Brazil 13171 T 2194 2194
146 Brazil 13172 G 2194 2194
147 Brazil 13173 G 2194 2194
148 Brazil 13174 T 2194 2194
149 Brazil 13175 A 2194 2194
150 Brazil 13176 C 2194 2194
151 Brazil 13177 T 2194 2194
152 Brazil 13178 G 2194 2194
153 Brazil 13179 G 2194 2194
154 Brazil 13180 T 2194 2194
155 Brazil 13181 C 2194 2194
156 Brazil 13182 A 2194 2194
157 Brazil 13183 G 2194 2194
158 Brazil 13184 G 2194 2194
159 Brazil 13185 C 2194 2194
160 Brazil 13186 A 2194 2194
161 Brazil 13187 A 2194 2194
162 Brazil 13188 T 2194 2194
163 Brazil 13189 A 2194 2194
164 Brazil 13190 A 2194 2194
165 Brazil 13191 C 2194 2194
166 Brazil 13192 A 2194 2194
167 Brazil 13193 G 2194 2194
168 Brazil 13194 T 2194 2194
169 Brazil 13195 T 2194 2194
170 Brazil 13196 A 2194 2194
171 Brazil 13197 C 2194 2194
172 Brazil 13198 A 2194 2194
173 Brazil 13199 C 2194 2194
174 Brazil 13200 C 2193 2193
175 Brazil 13201 G 2193 2193
176 Brazil 13202 G 2193 2193
177 Brazil 13203 A 2193 2193
178 Brazil 13204 A G 2193 2192 Glu4313Glu
179 Brazil 13205 G 2193 2193
180 Brazil 13206 C 2193 2193
181 Brazil 13207 C 2193 2193
182 Brazil 13208 A T 2193 2192 Asn4315Tyr
183 Brazil 13209 A 2193 2193
184 Brazil 13210 T 2193 2193
185 Brazil 13211 A 2193 2193
186 Brazil 13212 T 2193 2193
187 Brazil 13213 G 2193 2193
188 Brazil 13214 G 2193 2193
189 Brazil 13215 A 2193 2193
190 Brazil 13216 T 2193 2193
191 Brazil 13217 C 2193 2193
192 Brazil 13218 A 2193 2193
193 Brazil 13219 A 2193 2193
194 Brazil 13220 G 2193 2193
195 Brazil 13221 A 2193 2193
196 Brazil 13222 A 2193 2193
197 Brazil 13223 T 2193 2193
198 Brazil 13224 C 2193 2193
199 Brazil 13225 C T 2193 2192 Ser4320Ser
200 Brazil 13226 T 2193 2193
201 Brazil 13227 T 2193 2193
202 Brazil 13228 T 2193 2193
203 Brazil 13229 G 2193 2193
204 Brazil 13230 G 2193 2193
205 Brazil 13231 T 2193 2193
206 Brazil 13232 G 2193 2193
207 Brazil 13233 G 2193 2193
208 Brazil 13234 T 2193 2193
209 Brazil 13235 G 2193 2193
210 Brazil 13236 C 2193 2193
211 Brazil 13237 A G 2193 2192 Ala4324Ala
212 Brazil 13238 T 2193 2193
213 Brazil 13239 C 2193 2193
214 Brazil 13240 G 2193 2193
215 Brazil 13241 T 2193 2193
216 Brazil 13242 G 2193 2193
217 Brazil 13243 T 2193 2193
218 Brazil 13244 T 2193 2193
219 Brazil 13245 G 2193 2193
220 Brazil 13246 T 2193 2193
221 Brazil 13247 C 2193 2193
222 Brazil 13248 T 2193 2193
223 Brazil 13249 G 2193 2193
224 Brazil 13250 T 2193 2193
225 Brazil 13251 A 2193 2193
226 Brazil 13252 C 2193 2193
227 Brazil 13253 T 2193 2193
228 Brazil 13254 G 2193 2193
229 Brazil 13255 C T 2193 2192 Cys4330Cys
230 Brazil 13256 C 2193 2193
231 Brazil 13257 G 2193 2193
232 Brazil 13258 T 2193 2193
233 Brazil 13259 T 2193 2193
234 Brazil 13260 G 2193 2193
235 Brazil 13261 C 2193 2193
236 Brazil 13262 C 2193 2193
237 Brazil 13263 A 2193 2193
238 Brazil 13264 C 2193 2193
239 Brazil 13265 A 2193 2193
240 Brazil 13266 T 2193 2193
241 Brazil 13267 A 2193 2193
242 Brazil 13268 G 2193 2193
243 Brazil 13269 A 2193 2193
244 Brazil 13270 T 2193 2193
245 Brazil 13271 C 2193 2192
246 Brazil 13272 A 2193 2192
247 Brazil 13273 T 2193 2192
248 Brazil 13274 C 2193 2192
249 Brazil 13275 C 2193 2192
250 Brazil 13276 A 2193 2192
251 Brazil 13277 A 2193 2192
252 Brazil 13278 A 2193 2192
253 Brazil 13279 T 2193 2192
254 Brazil 13280 C 2193 2192
255 Brazil 13281 C 2193 2192
256 Brazil 13282 T 2193 2192
257 Brazil 13283 A 2193 2192
258 Brazil 13284 A 2193 2192
259 Brazil 13285 A 2193 2192
260 Brazil 13286 G 2193 2192
261 Brazil 13287 G 2193 2192
262 Brazil 13288 A 2193 2192
263 Brazil 13289 T C 2193 2191 Phe4342Leu
264 Brazil 13290 T 2193 2192
265 Brazil 13291 T 2193 2192
266 Brazil 13292 T 2193 2192
267 Brazil 13293 G 2193 2192
268 Brazil 13294 T 2193 2192
269 Brazil 13295 G 2193 2192
270 Brazil 13296 A 2193 2193
271 Brazil 13297 C T 2193 2190 Asp4344Asp
272 Brazil 13298 T 2193 2193
273 Brazil 13299 T 2193 2193
274 Brazil 13300 A 2193 2193
275 Brazil 13301 A 2193 2193
276 Brazil 13302 A 2193 2193
277 Brazil 13303 A 2193 2193
278 Brazil 13304 G 2193 2193
279 Brazil 13305 G 2193 2193
280 Brazil 13306 T 2193 2193
281 Brazil 13307 A 2193 2193
282 Brazil 13308 A G 2193 2192 Lys4348Arg
283 Brazil 13309 G 2193 2193
284 Brazil 13310 T 2193 2193
285 Brazil 13311 A 2193 2193
286 Brazil 13312 T 2193 2193
287 Brazil 13313 G 2193 2193
288 Brazil 13314 T 2193 2193
289 Brazil 13315 A 2193 2193
290 Brazil 13316 C 2193 2193
291 Brazil 13317 A 2193 2193
292 Brazil 13318 A 2193 2193
293 Brazil 13319 A 2193 2193
294 Brazil 13320 T 2193 2193
295 Brazil 13321 A 2193 2193
296 Brazil 13322 C 2193 2193
297 Brazil 13323 C 2193 2193
298 Brazil 13324 T 2193 2193
299 Brazil 13325 A 2193 2193
300 Brazil 13326 C 2193 2193
301 Brazil 13327 A 2193 2193
302 Brazil 13328 A 2193 2193
303 Brazil 13329 C T 2193 2192 Thr4355Ile
304 Brazil 13330 T 2193 2193
305 Brazil 13331 T 2193 2193
306 Brazil 13332 G 2193 2193
307 Brazil 13333 T 2193 2193
308 Brazil 13334 G 2193 2193
309 Brazil 13335 C 2193 2193
310 Brazil 13336 T 2193 2193
311 Brazil 13337 A 2193 2193
312 Brazil 13338 A 2192 2192
313 Brazil 13339 T 2192 2192
314 Brazil 13340 G T 2192 2191 Asp4359Tyr
315 Brazil 13341 A 2192 2192
316 Brazil 13342 C 2192 2192
317 Brazil 13343 C 2192 2192
318 Brazil 13344 C 2192 2192
319 Brazil 13345 T 2192 2192
320 Brazil 13346 G 2192 2192
321 Brazil 13347 T 2192 2192
322 Brazil 13348 G T 2192 2189 Val4361Val
323 Brazil 13349 G 2192 2192
324 Brazil 13350 G 2192 2192
325 Brazil 13351 T 2192 2192
326 Brazil 13352 T 2191 2191
327 Brazil 13353 T 2191 2191
328 Brazil 13354 T 2191 2191
329 Brazil 13355 A 2191 2191
330 Brazil 13356 C T 2191 2190 Thr4364Ile
331 Brazil 13357 A 2191 2191
332 Brazil 13358 C 2191 2191
333 Brazil 13359 T 2191 2191
334 Brazil 13360 T 2191 2191
335 Brazil 13361 A 2191 2191
336 Brazil 13362 A 2191 2191
337 Brazil 13363 A 2191 2191
338 Brazil 13364 A 2186 2186
339 Brazil 13365 A 2186 2186
340 Brazil 13366 C 2186 2186
341 Brazil 13367 A 2186 2186
342 Brazil 13368 C 2185 2185
343 Brazil 13369 A 2185 2185
344 Brazil 13370 G 2185 2185
345 Brazil 13371 T 2184 2184
346 Brazil 13372 C 2184 2184
347 Brazil 13373 T 2184 2184
348 Brazil 13374 G 2183 2183
349 Brazil 13375 T 2183 2183
350 Brazil 13376 A 2183 2183
351 Brazil 13377 C 2183 2183
352 Brazil 13378 C 2182 2181
353 Brazil 13379 G 1873 1870
354 Brazil 13380 T 1873 1870
355 Brazil 13381 C 1872 1868
356 Brazil 13382 T 1872 1868
357 Brazil 13383 G 1872 1868
358 Brazil 13384 C T 1871 1865 Cys4373Cys
359 Brazil 13385 G A 1871 1866 Gly4374Ser
360 Brazil 13386 G 1871 1867
361 Brazil 13387 T 1871 1867
362 Brazil 13388 A 1871 1867
363 Brazil 13389 T 1871 1867
364 Brazil 13390 G 1871 1869
365 Brazil 13391 T 1871 1869
366 Brazil 13392 G 1871 1869
367 Brazil 13393 G 1871 1869
368 Brazil 13394 A 1871 1868
369 Brazil 13395 A G 1871 1868 Lys4377Arg
370 Brazil 13396 A C 1871 1867 Lys4377Asn
371 Brazil 13397 G 1871 1869
372 Brazil 13398 G 1871 1869
373 Brazil 13399 T 1860 1858
374 Brazil 13400 T 1860 1858
375 Brazil 13401 A 1839 1838
376 Brazil 13402 T C 1836 1835 Tyr4379Tyr
377 Brazil 13403 G 1836 1836
378 Brazil 13404 G 1835 1835
379 Brazil 13405 C 1833 1833
380 Brazil 13406 T 1833 1833
381 Brazil 13407 G 1833 1833
382 Brazil 13408 T 1833 1833
383 Brazil 13409 A 1833 1833
384 Brazil 13410 G 1833 1833
385 Brazil 13411 T 1833 1833
386 Brazil 13412 T 1833 1833
387 Brazil 13413 G 1833 1833
388 Brazil 13414 T 1831 1831
389 Brazil 13415 G 1830 1830
390 Brazil 13416 A 1830 1830
391 Brazil 13417 T 1830 1830
392 Brazil 13418 C 1830 1830
393 Brazil 13419 A 1830 1830
394 Brazil 13420 A 1830 1830
395 Brazil 13421 C 1830 1830
396 Brazil 13422 T 1830 1830
397 Brazil 13423 C 1830 1830
398 Brazil 13424 C 1830 1829
399 Brazil 13425 G 1830 1829
400 Brazil 13426 C 1830 1830
401 Brazil 13427 G 1830 1830
402 Brazil 13428 A 1830 1830
403 Brazil 13429 A 1830 1830
404 Brazil 13430 C 1830 1830
405 Brazil 13431 C 1830 1830
406 Brazil 13432 C T 1830 1829 Pro4389Pro
407 Brazil 13433 A 1830 1830
408 Brazil 13434 T 1830 1830
409 Brazil 13435 G 1830 1830
410 Brazil 13436 C T 1830 1829 Leu4391Phe
411 Brazil 13437 T 1830 1830
412 Brazil 13438 T 1830 1830
413 Brazil 13439 C 1829 1829
414 Brazil 13440 A 1829 1829
415 Brazil 13441 G 1828 1828