National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                       1                
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bolivia 13026 C 27 27
1 Bolivia 13027 T 27 27
2 Bolivia 13028 G 27 27
3 Bolivia 13029 G 27 27
4 Bolivia 13030 T 27 27
5 Bolivia 13031 A 27 27
6 Bolivia 13032 A 27 27
7 Bolivia 13033 T 27 27
8 Bolivia 13034 G 27 27
9 Bolivia 13035 C 27 27
10 Bolivia 13036 A 27 27
11 Bolivia 13037 A 27 27
12 Bolivia 13038 C 27 27
13 Bolivia 13039 A 27 27
14 Bolivia 13040 G 27 27
15 Bolivia 13041 A 27 27
16 Bolivia 13042 A 27 27
17 Bolivia 13043 G 27 27
18 Bolivia 13044 T 27 27
19 Bolivia 13045 G 27 27
20 Bolivia 13046 C 27 27
21 Bolivia 13047 C 27 27
22 Bolivia 13048 T 27 27
23 Bolivia 13049 G 27 27
24 Bolivia 13050 C 27 27
25 Bolivia 13051 C 27 27
26 Bolivia 13052 A 27 27
27 Bolivia 13053 A 27 27
28 Bolivia 13054 T 27 27
29 Bolivia 13055 T 27 27
30 Bolivia 13056 C 27 27
31 Bolivia 13057 A 27 27
32 Bolivia 13058 A 27 27
33 Bolivia 13059 C 27 27
34 Bolivia 13060 T 27 27
35 Bolivia 13061 G 27 27
36 Bolivia 13062 T 27 27
37 Bolivia 13063 A 27 27
38 Bolivia 13064 T 27 27
39 Bolivia 13065 T 27 27
40 Bolivia 13066 A 27 27
41 Bolivia 13067 T 27 27
42 Bolivia 13068 C 27 27
43 Bolivia 13069 T 27 27
44 Bolivia 13070 T 27 27
45 Bolivia 13071 T 27 27
46 Bolivia 13072 C 27 27
47 Bolivia 13073 T 27 27
48 Bolivia 13074 G 27 27
49 Bolivia 13075 T 27 27
50 Bolivia 13076 G 27 27
51 Bolivia 13077 C 27 27
52 Bolivia 13078 T 27 27
53 Bolivia 13079 T 27 27
54 Bolivia 13080 T 27 27
55 Bolivia 13081 T 27 27
56 Bolivia 13082 G 27 27
57 Bolivia 13083 C 27 27
58 Bolivia 13084 T 27 27
59 Bolivia 13085 G 27 27
60 Bolivia 13086 T 27 27
61 Bolivia 13087 A 27 27
62 Bolivia 13088 G 27 27
63 Bolivia 13089 A 27 27
64 Bolivia 13090 T 27 27
65 Bolivia 13091 G 27 27
66 Bolivia 13092 C 27 27
67 Bolivia 13093 T 27 27
68 Bolivia 13094 G 27 27
69 Bolivia 13095 C 27 27
70 Bolivia 13096 T 27 27
71 Bolivia 13097 A 27 27
72 Bolivia 13098 A 27 27
73 Bolivia 13099 A 27 27
74 Bolivia 13100 G 27 27
75 Bolivia 13101 C 27 27
76 Bolivia 13102 T 27 27
77 Bolivia 13103 T 27 27
78 Bolivia 13104 A 27 27
79 Bolivia 13105 C 27 27
80 Bolivia 13106 A 27 27
81 Bolivia 13107 A 27 27
82 Bolivia 13108 A 27 27
83 Bolivia 13109 G 27 27
84 Bolivia 13110 A 27 27
85 Bolivia 13111 T 27 27
86 Bolivia 13112 T 27 27
87 Bolivia 13113 A 27 27
88 Bolivia 13114 T 27 27
89 Bolivia 13115 C 27 27
90 Bolivia 13116 T 27 27
91 Bolivia 13117 A 27 27
92 Bolivia 13118 G 27 27
93 Bolivia 13119 C 27 27
94 Bolivia 13120 T 27 27
95 Bolivia 13121 A 27 27
96 Bolivia 13122 G 27 27
97 Bolivia 13123 T 27 27
98 Bolivia 13124 G 27 27
99 Bolivia 13125 G 27 27
100 Bolivia 13126 G 27 27
101 Bolivia 13127 G 27 27
102 Bolivia 13128 G 27 27
103 Bolivia 13129 A 27 27
104 Bolivia 13130 C 27 27
105 Bolivia 13131 A 27 27
106 Bolivia 13132 A 27 27
107 Bolivia 13133 C 27 27
108 Bolivia 13134 C 27 27
109 Bolivia 13135 A 27 27
110 Bolivia 13136 A 27 27
111 Bolivia 13137 T 27 27
112 Bolivia 13138 C 27 27
113 Bolivia 13139 A 27 27
114 Bolivia 13140 C 27 27
115 Bolivia 13141 T 27 27
116 Bolivia 13142 A 27 27
117 Bolivia 13143 A 27 27
118 Bolivia 13144 T 27 27
119 Bolivia 13145 T 27 27
120 Bolivia 13146 G 27 27
121 Bolivia 13147 T 27 27
122 Bolivia 13148 G 27 27
123 Bolivia 13149 T 27 27
124 Bolivia 13150 T 27 27
125 Bolivia 13151 A 27 27
126 Bolivia 13152 A 27 27
127 Bolivia 13153 G 27 27
128 Bolivia 13154 A 27 27
129 Bolivia 13155 T 27 27
130 Bolivia 13156 G 27 27
131 Bolivia 13157 T 27 27
132 Bolivia 13158 T 27 27
133 Bolivia 13159 G 27 27
134 Bolivia 13160 T 27 27
135 Bolivia 13161 G 27 27
136 Bolivia 13162 T 27 27
137 Bolivia 13163 A 27 27
138 Bolivia 13164 C 27 27
139 Bolivia 13165 A 27 27
140 Bolivia 13166 C 27 27
141 Bolivia 13167 A 27 27
142 Bolivia 13168 C 27 27
143 Bolivia 13169 A 27 27
144 Bolivia 13170 C 27 27
145 Bolivia 13171 T 27 27
146 Bolivia 13172 G 27 27
147 Bolivia 13173 G 27 27
148 Bolivia 13174 T 27 27
149 Bolivia 13175 A 27 27
150 Bolivia 13176 C 27 27
151 Bolivia 13177 T 27 27
152 Bolivia 13178 G 27 27
153 Bolivia 13179 G 27 27
154 Bolivia 13180 T 27 27
155 Bolivia 13181 C 27 27
156 Bolivia 13182 A 27 27
157 Bolivia 13183 G 27 27
158 Bolivia 13184 G 27 27
159 Bolivia 13185 C 27 27
160 Bolivia 13186 A 27 27
161 Bolivia 13187 A 27 27
162 Bolivia 13188 T 27 27
163 Bolivia 13189 A 27 27
164 Bolivia 13190 A 27 27
165 Bolivia 13191 C 27 27
166 Bolivia 13192 A 27 27
167 Bolivia 13193 G 27 27
168 Bolivia 13194 T 27 27
169 Bolivia 13195 T 27 27
170 Bolivia 13196 A 27 27
171 Bolivia 13197 C 27 27
172 Bolivia 13198 A 27 27
173 Bolivia 13199 C 27 27
174 Bolivia 13200 C 27 27
175 Bolivia 13201 G 27 27
176 Bolivia 13202 G 27 27
177 Bolivia 13203 A 27 27
178 Bolivia 13204 A 27 27
179 Bolivia 13205 G 27 27
180 Bolivia 13206 C 27 27
181 Bolivia 13207 C 27 27
182 Bolivia 13208 A 27 27
183 Bolivia 13209 A 27 27
184 Bolivia 13210 T 27 27
185 Bolivia 13211 A 27 27
186 Bolivia 13212 T 27 27
187 Bolivia 13213 G 27 27
188 Bolivia 13214 G 27 27
189 Bolivia 13215 A 27 27
190 Bolivia 13216 T 27 27
191 Bolivia 13217 C 27 27
192 Bolivia 13218 A 27 27
193 Bolivia 13219 A 27 27
194 Bolivia 13220 G 27 27
195 Bolivia 13221 A 27 27
196 Bolivia 13222 A 27 27
197 Bolivia 13223 T 27 27
198 Bolivia 13224 C 27 27
199 Bolivia 13225 C 27 27
200 Bolivia 13226 T 27 27
201 Bolivia 13227 T 27 27
202 Bolivia 13228 T 27 27
203 Bolivia 13229 G 27 27
204 Bolivia 13230 G 27 27
205 Bolivia 13231 T 27 27
206 Bolivia 13232 G 27 27
207 Bolivia 13233 G 27 27
208 Bolivia 13234 T 27 27
209 Bolivia 13235 G 27 27
210 Bolivia 13236 C 27 27
211 Bolivia 13237 A 27 27
212 Bolivia 13238 T 27 27
213 Bolivia 13239 C 27 27
214 Bolivia 13240 G 27 27
215 Bolivia 13241 T 27 27
216 Bolivia 13242 G 27 27
217 Bolivia 13243 T 27 27
218 Bolivia 13244 T 27 27
219 Bolivia 13245 G 27 27
220 Bolivia 13246 T 27 27
221 Bolivia 13247 C 27 27
222 Bolivia 13248 T 27 27
223 Bolivia 13249 G 27 27
224 Bolivia 13250 T 27 27
225 Bolivia 13251 A 27 27
226 Bolivia 13252 C 27 27
227 Bolivia 13253 T 27 27
228 Bolivia 13254 G 27 27
229 Bolivia 13255 C 27 27
230 Bolivia 13256 C 27 27
231 Bolivia 13257 G 27 27
232 Bolivia 13258 T 27 27
233 Bolivia 13259 T 27 27
234 Bolivia 13260 G 27 27
235 Bolivia 13261 C 27 27
236 Bolivia 13262 C 27 27
237 Bolivia 13263 A 27 27
238 Bolivia 13264 C 27 27
239 Bolivia 13265 A 27 27
240 Bolivia 13266 T 27 27
241 Bolivia 13267 A 27 27
242 Bolivia 13268 G 27 27
243 Bolivia 13269 A 27 27
244 Bolivia 13270 T 27 27
245 Bolivia 13271 C 27 27
246 Bolivia 13272 A 27 27
247 Bolivia 13273 T 27 27
248 Bolivia 13274 C 27 27
249 Bolivia 13275 C 27 27
250 Bolivia 13276 A 27 27
251 Bolivia 13277 A 27 27
252 Bolivia 13278 A 27 27
253 Bolivia 13279 T C 27 26 Asn4338Asn
254 Bolivia 13280 C 27 27
255 Bolivia 13281 C 27 27
256 Bolivia 13282 T 27 27
257 Bolivia 13283 A 27 27
258 Bolivia 13284 A 27 27
259 Bolivia 13285 A 27 27
260 Bolivia 13286 G 27 27
261 Bolivia 13287 G 27 27
262 Bolivia 13288 A 27 27
263 Bolivia 13289 T 27 27
264 Bolivia 13290 T 27 27
265 Bolivia 13291 T 27 27
266 Bolivia 13292 T 27 27
267 Bolivia 13293 G 27 27
268 Bolivia 13294 T 27 27
269 Bolivia 13295 G 27 27
270 Bolivia 13296 A 27 27
271 Bolivia 13297 C 27 27
272 Bolivia 13298 T 27 27
273 Bolivia 13299 T 27 27
274 Bolivia 13300 A 27 27
275 Bolivia 13301 A 27 27
276 Bolivia 13302 A 27 27
277 Bolivia 13303 A 27 27
278 Bolivia 13304 G 27 27
279 Bolivia 13305 G 27 27
280 Bolivia 13306 T 27 27
281 Bolivia 13307 A 27 27
282 Bolivia 13308 A 27 27
283 Bolivia 13309 G 27 27
284 Bolivia 13310 T 27 27
285 Bolivia 13311 A 27 27
286 Bolivia 13312 T 27 27
287 Bolivia 13313 G 27 27
288 Bolivia 13314 T 27 27
289 Bolivia 13315 A 27 27
290 Bolivia 13316 C 27 27
291 Bolivia 13317 A 27 27
292 Bolivia 13318 A 27 27
293 Bolivia 13319 A 27 27
294 Bolivia 13320 T 27 27
295 Bolivia 13321 A 27 27
296 Bolivia 13322 C 27 27
297 Bolivia 13323 C 27 27
298 Bolivia 13324 T 27 27
299 Bolivia 13325 A 27 27
300 Bolivia 13326 C 27 27
301 Bolivia 13327 A 27 27
302 Bolivia 13328 A 27 27
303 Bolivia 13329 C 27 27
304 Bolivia 13330 T 27 27
305 Bolivia 13331 T 27 27
306 Bolivia 13332 G 27 27
307 Bolivia 13333 T 27 27
308 Bolivia 13334 G 27 27
309 Bolivia 13335 C 27 27
310 Bolivia 13336 T 27 27
311 Bolivia 13337 A 27 27
312 Bolivia 13338 A 27 27
313 Bolivia 13339 T 27 27
314 Bolivia 13340 G 27 27
315 Bolivia 13341 A 27 27
316 Bolivia 13342 C 27 27
317 Bolivia 13343 C 27 27
318 Bolivia 13344 C 27 27
319 Bolivia 13345 T 27 27
320 Bolivia 13346 G 27 27
321 Bolivia 13347 T 27 27
322 Bolivia 13348 G 27 27
323 Bolivia 13349 G 27 27
324 Bolivia 13350 G 27 27
325 Bolivia 13351 T 27 27
326 Bolivia 13352 T 27 27
327 Bolivia 13353 T 27 27
328 Bolivia 13354 T 27 27
329 Bolivia 13355 A 27 27
330 Bolivia 13356 C 27 27
331 Bolivia 13357 A 27 27
332 Bolivia 13358 C 27 27
333 Bolivia 13359 T 27 27
334 Bolivia 13360 T 27 27
335 Bolivia 13361 A 27 27
336 Bolivia 13362 A 27 27
337 Bolivia 13363 A 27 27
338 Bolivia 13364 A 27 27
339 Bolivia 13365 A 27 27
340 Bolivia 13366 C 27 27
341 Bolivia 13367 A 27 27
342 Bolivia 13368 C 27 27
343 Bolivia 13369 A 27 27
344 Bolivia 13370 G 27 27
345 Bolivia 13371 T 27 27
346 Bolivia 13372 C 27 27
347 Bolivia 13373 T 27 27
348 Bolivia 13374 G 27 27
349 Bolivia 13375 T 27 27
350 Bolivia 13376 A 27 27
351 Bolivia 13377 C 27 27
352 Bolivia 13378 C 27 27
353 Bolivia 13379 G 27 27
354 Bolivia 13380 T 27 27
355 Bolivia 13381 C 27 27
356 Bolivia 13382 T 27 27
357 Bolivia 13383 G 27 27
358 Bolivia 13384 C 27 27
359 Bolivia 13385 G 27 27
360 Bolivia 13386 G 27 27
361 Bolivia 13387 T 27 27
362 Bolivia 13388 A 27 27
363 Bolivia 13389 T 27 27
364 Bolivia 13390 G 27 27
365 Bolivia 13391 T 27 27
366 Bolivia 13392 G 27 27
367 Bolivia 13393 G 27 27
368 Bolivia 13394 A 27 27
369 Bolivia 13395 A 27 27
370 Bolivia 13396 A 27 27
371 Bolivia 13397 G 27 27
372 Bolivia 13398 G 27 27
373 Bolivia 13399 T 27 27
374 Bolivia 13400 T 27 27
375 Bolivia 13401 A 27 27
376 Bolivia 13402 T 27 27
377 Bolivia 13403 G 27 27
378 Bolivia 13404 G 27 27
379 Bolivia 13405 C 27 27
380 Bolivia 13406 T 27 27
381 Bolivia 13407 G 27 27
382 Bolivia 13408 T 27 27
383 Bolivia 13409 A 27 27
384 Bolivia 13410 G 27 27
385 Bolivia 13411 T 27 27
386 Bolivia 13412 T 27 27
387 Bolivia 13413 G 27 27
388 Bolivia 13414 T 27 27
389 Bolivia 13415 G 27 27
390 Bolivia 13416 A 27 27
391 Bolivia 13417 T 27 27
392 Bolivia 13418 C 27 27
393 Bolivia 13419 A 27 27
394 Bolivia 13420 A 27 27
395 Bolivia 13421 C 27 27
396 Bolivia 13422 T 27 27
397 Bolivia 13423 C 27 27
398 Bolivia 13424 C 27 27
399 Bolivia 13425 G 27 27
400 Bolivia 13426 C 27 27
401 Bolivia 13427 G 27 27
402 Bolivia 13428 A 27 27
403 Bolivia 13429 A 27 27
404 Bolivia 13430 C 27 27
405 Bolivia 13431 C 27 27
406 Bolivia 13432 C 27 27
407 Bolivia 13433 A 27 27
408 Bolivia 13434 T 27 27
409 Bolivia 13435 G 27 27
410 Bolivia 13436 C 27 27
411 Bolivia 13437 T 27 27
412 Bolivia 13438 T 27 27
413 Bolivia 13439 C 27 27
414 Bolivia 13440 A 27 27
415 Bolivia 13441 G 27 27