National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 1                                      
C   39   1                                    
D   21                                        
E   12                                        
F   15         2                              
G   39           1                            
H   9                                        
I   12                                        
K   24                             1          
L   24                                        
M   12                                        
N   21                                        
P   24                         1              
Q   18                                        
R   6                                        
S   18                                        
T   39 1             1                 1      
V   27 1       1     1                   2    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Bangladesh 13026 C 665 665
1 Bangladesh 13027 T 665 665
2 Bangladesh 13028 G 665 665
3 Bangladesh 13029 G 665 664
4 Bangladesh 13030 T 671 671
5 Bangladesh 13031 A 671 671
6 Bangladesh 13032 A 671 671
7 Bangladesh 13033 T 671 671
8 Bangladesh 13034 G 671 671
9 Bangladesh 13035 C 671 671
10 Bangladesh 13036 A 671 671
11 Bangladesh 13037 A 671 671
12 Bangladesh 13038 C 671 671
13 Bangladesh 13039 A 671 671
14 Bangladesh 13040 G 671 671
15 Bangladesh 13041 A 671 671
16 Bangladesh 13042 A 671 671
17 Bangladesh 13043 G 671 671
18 Bangladesh 13044 T 671 671
19 Bangladesh 13045 G 671 671
20 Bangladesh 13046 C 671 671
21 Bangladesh 13047 C 671 671
22 Bangladesh 13048 T 671 671
23 Bangladesh 13049 G 671 671
24 Bangladesh 13050 C 671 671
25 Bangladesh 13051 C T 671 670 Ala4262Ala
26 Bangladesh 13052 A 671 671
27 Bangladesh 13053 A 671 671
28 Bangladesh 13054 T 671 671
29 Bangladesh 13055 T 671 671
30 Bangladesh 13056 C 671 671
31 Bangladesh 13057 A 671 671
32 Bangladesh 13058 A 671 671
33 Bangladesh 13059 C 671 671
34 Bangladesh 13060 T C 671 668 Thr4265Thr
35 Bangladesh 13061 G 671 671
36 Bangladesh 13062 T 671 671
37 Bangladesh 13063 A 671 671
38 Bangladesh 13064 T 671 671
39 Bangladesh 13065 T 671 671
40 Bangladesh 13066 A 671 671
41 Bangladesh 13067 T 671 671
42 Bangladesh 13068 C 671 671
43 Bangladesh 13069 T 671 671
44 Bangladesh 13070 T 671 671
45 Bangladesh 13071 T 671 671
46 Bangladesh 13072 C T 671 670 Phe4269Phe
47 Bangladesh 13073 T 671 671
48 Bangladesh 13074 G 671 671
49 Bangladesh 13075 T 670 670
50 Bangladesh 13076 G 670 670
51 Bangladesh 13077 C 670 670
52 Bangladesh 13078 T 670 670
53 Bangladesh 13079 T 670 670
54 Bangladesh 13080 T 670 670
55 Bangladesh 13081 T 670 670
56 Bangladesh 13082 G 670 670
57 Bangladesh 13083 C 671 671
58 Bangladesh 13084 T 671 671
59 Bangladesh 13085 G 671 671
60 Bangladesh 13086 T 671 671
61 Bangladesh 13087 A 671 671
62 Bangladesh 13088 G 671 671
63 Bangladesh 13089 A 671 671
64 Bangladesh 13090 T 671 671
65 Bangladesh 13091 G 671 671
66 Bangladesh 13092 C 671 671
67 Bangladesh 13093 T 671 671
68 Bangladesh 13094 G 671 671
69 Bangladesh 13095 C 671 671
70 Bangladesh 13096 T 671 670
71 Bangladesh 13097 A 671 671
72 Bangladesh 13098 A 671 671
73 Bangladesh 13099 A 671 671
74 Bangladesh 13100 G 671 671
75 Bangladesh 13101 C 671 671
76 Bangladesh 13102 T 671 671
77 Bangladesh 13103 T 671 671
78 Bangladesh 13104 A 671 671
79 Bangladesh 13105 C 671 671
80 Bangladesh 13106 A 671 671
81 Bangladesh 13107 A 671 671
82 Bangladesh 13108 A 671 671
83 Bangladesh 13109 G 671 671
84 Bangladesh 13110 A 671 671
85 Bangladesh 13111 T 671 671
86 Bangladesh 13112 T 671 667
87 Bangladesh 13113 A 671 671
88 Bangladesh 13114 T 671 671
89 Bangladesh 13115 C 671 671
90 Bangladesh 13116 T 671 671
91 Bangladesh 13117 A 671 671
92 Bangladesh 13118 G 671 671
93 Bangladesh 13119 C 671 671
94 Bangladesh 13120 T 671 671
95 Bangladesh 13121 A 671 671
96 Bangladesh 13122 G 671 671
97 Bangladesh 13123 T 671 671
98 Bangladesh 13124 G 671 671
99 Bangladesh 13125 G 671 671
100 Bangladesh 13126 G 671 671
101 Bangladesh 13127 G 671 671
102 Bangladesh 13128 G 671 666
103 Bangladesh 13129 A 671 671
104 Bangladesh 13130 C 671 671
105 Bangladesh 13131 A 671 671
106 Bangladesh 13132 A 671 671
107 Bangladesh 13133 C 671 671
108 Bangladesh 13134 C 671 671
109 Bangladesh 13135 A 671 671
110 Bangladesh 13136 A 671 671
111 Bangladesh 13137 T 671 671
112 Bangladesh 13138 C 671 671
113 Bangladesh 13139 A 671 671
114 Bangladesh 13140 C 671 671
115 Bangladesh 13141 T 671 671
116 Bangladesh 13142 A 671 671
117 Bangladesh 13143 A 671 671
118 Bangladesh 13144 T 671 671
119 Bangladesh 13145 T 671 671
120 Bangladesh 13146 G 671 671
121 Bangladesh 13147 T 671 671
122 Bangladesh 13148 G 671 671
123 Bangladesh 13149 T 671 671
124 Bangladesh 13150 T 671 671
125 Bangladesh 13151 A 671 671
126 Bangladesh 13152 A 671 671
127 Bangladesh 13153 G 671 671
128 Bangladesh 13154 A 671 671
129 Bangladesh 13155 T 671 671
130 Bangladesh 13156 G 671 671
131 Bangladesh 13157 T 671 671
132 Bangladesh 13158 T 671 671
133 Bangladesh 13159 G 671 671
134 Bangladesh 13160 T 671 671
135 Bangladesh 13161 G 671 671
136 Bangladesh 13162 T 671 670
137 Bangladesh 13163 A 671 670
138 Bangladesh 13164 C 671 670
139 Bangladesh 13165 A 671 670
140 Bangladesh 13166 C 671 670
141 Bangladesh 13167 A 671 670
142 Bangladesh 13168 C 671 671
143 Bangladesh 13169 A 671 671
144 Bangladesh 13170 C 671 671
145 Bangladesh 13171 T 671 671
146 Bangladesh 13172 G 671 671
147 Bangladesh 13173 G 671 671
148 Bangladesh 13174 T 671 671
149 Bangladesh 13175 A 671 671
150 Bangladesh 13176 C 671 671
151 Bangladesh 13177 T 671 671
152 Bangladesh 13178 G 671 671
153 Bangladesh 13179 G 671 671
154 Bangladesh 13180 T 671 671
155 Bangladesh 13181 C 671 671
156 Bangladesh 13182 A 671 671
157 Bangladesh 13183 G 671 671
158 Bangladesh 13184 G 671 671
159 Bangladesh 13185 C 671 671
160 Bangladesh 13186 A 671 671
161 Bangladesh 13187 A 671 671
162 Bangladesh 13188 T 671 671
163 Bangladesh 13189 A 671 671
164 Bangladesh 13190 A 671 671
165 Bangladesh 13191 C 671 671
166 Bangladesh 13192 A 671 671
167 Bangladesh 13193 G 671 671
168 Bangladesh 13194 T 671 671
169 Bangladesh 13195 T C 671 670 Val4310Val
170 Bangladesh 13196 A 671 671
171 Bangladesh 13197 C 671 671
172 Bangladesh 13198 A 671 671
173 Bangladesh 13199 C 671 671
174 Bangladesh 13200 C 671 671
175 Bangladesh 13201 G T 671 667 Pro4312Pro
176 Bangladesh 13202 G 671 671
177 Bangladesh 13203 A 671 671
178 Bangladesh 13204 A 671 671
179 Bangladesh 13205 G 671 671
180 Bangladesh 13206 C 671 671
181 Bangladesh 13207 C 671 671
182 Bangladesh 13208 A 671 671
183 Bangladesh 13209 A 671 671
184 Bangladesh 13210 T 671 671
185 Bangladesh 13211 A 671 671
186 Bangladesh 13212 T 671 671
187 Bangladesh 13213 G 671 671
188 Bangladesh 13214 G 671 671
189 Bangladesh 13215 A 671 671
190 Bangladesh 13216 T 671 671
191 Bangladesh 13217 C 671 671
192 Bangladesh 13218 A 671 671
193 Bangladesh 13219 A 671 671
194 Bangladesh 13220 G 671 670
195 Bangladesh 13221 A 671 671
196 Bangladesh 13222 A 671 671
197 Bangladesh 13223 T 671 671
198 Bangladesh 13224 C 671 671
199 Bangladesh 13225 C 671 671
200 Bangladesh 13226 T 671 671
201 Bangladesh 13227 T 671 671
202 Bangladesh 13228 T 671 671
203 Bangladesh 13229 G 671 671
204 Bangladesh 13230 G 671 671
205 Bangladesh 13231 T 671 671
206 Bangladesh 13232 G 671 671
207 Bangladesh 13233 G 671 671
208 Bangladesh 13234 T 671 671
209 Bangladesh 13235 G 671 671
210 Bangladesh 13236 C 671 671
211 Bangladesh 13237 A 671 671
212 Bangladesh 13238 T 671 671
213 Bangladesh 13239 C 671 671
214 Bangladesh 13240 G 671 671
215 Bangladesh 13241 T 671 671
216 Bangladesh 13242 G 671 671
217 Bangladesh 13243 T 671 671
218 Bangladesh 13244 T 672 672
219 Bangladesh 13245 G 672 672
220 Bangladesh 13246 T 672 672
221 Bangladesh 13247 C 672 672
222 Bangladesh 13248 T 672 672
223 Bangladesh 13249 G 672 672
224 Bangladesh 13250 T 672 672
225 Bangladesh 13251 A 672 672
226 Bangladesh 13252 C 672 672
227 Bangladesh 13253 T 672 672
228 Bangladesh 13254 G 672 672
229 Bangladesh 13255 C T 672 663 Cys4330Cys
230 Bangladesh 13256 C 672 672
231 Bangladesh 13257 G 672 672
232 Bangladesh 13258 T 672 672
233 Bangladesh 13259 T 672 672
234 Bangladesh 13260 G 672 672
235 Bangladesh 13261 C 672 672
236 Bangladesh 13262 C 672 672
237 Bangladesh 13263 A 672 672
238 Bangladesh 13264 C 672 672
239 Bangladesh 13265 A 672 672
240 Bangladesh 13266 T 672 672
241 Bangladesh 13267 A 672 672
242 Bangladesh 13268 G 672 672
243 Bangladesh 13269 A 672 672
244 Bangladesh 13270 T 672 672
245 Bangladesh 13271 C 672 672
246 Bangladesh 13272 A 672 672
247 Bangladesh 13273 T 672 672
248 Bangladesh 13274 C 672 672
249 Bangladesh 13275 C 672 672
250 Bangladesh 13276 A 672 672
251 Bangladesh 13277 A 672 672
252 Bangladesh 13278 A 672 672
253 Bangladesh 13279 T 672 672
254 Bangladesh 13280 C 672 672
255 Bangladesh 13281 C 672 672
256 Bangladesh 13282 T 672 671
257 Bangladesh 13283 A 672 672
258 Bangladesh 13284 A 672 672
259 Bangladesh 13285 A 672 672
260 Bangladesh 13286 G 672 672
261 Bangladesh 13287 G 672 672
262 Bangladesh 13288 A G 672 671 Gly4341Gly
263 Bangladesh 13289 T 672 672
264 Bangladesh 13290 T 672 672
265 Bangladesh 13291 T 672 672
266 Bangladesh 13292 T 672 672
267 Bangladesh 13293 G 672 672
268 Bangladesh 13294 T 672 672
269 Bangladesh 13295 G 672 672
270 Bangladesh 13296 A 672 672
271 Bangladesh 13297 C 672 672
272 Bangladesh 13298 T 672 672
273 Bangladesh 13299 T 672 672
274 Bangladesh 13300 A 672 672
275 Bangladesh 13301 A 672 672
276 Bangladesh 13302 A 672 672
277 Bangladesh 13303 A 672 672
278 Bangladesh 13304 G 672 672
279 Bangladesh 13305 G 672 672
280 Bangladesh 13306 T 672 672
281 Bangladesh 13307 A 672 672
282 Bangladesh 13308 A G 672 671 Lys4348Arg
283 Bangladesh 13309 G 672 672
284 Bangladesh 13310 T 672 672
285 Bangladesh 13311 A 672 672
286 Bangladesh 13312 T 672 672
287 Bangladesh 13313 G 672 672
288 Bangladesh 13314 T C 672 671 Val4350Ala
289 Bangladesh 13315 A 672 672
290 Bangladesh 13316 C 672 672
291 Bangladesh 13317 A 672 672
292 Bangladesh 13318 A 672 672
293 Bangladesh 13319 A 672 672
294 Bangladesh 13320 T 672 672
295 Bangladesh 13321 A 672 672
296 Bangladesh 13322 C 672 672
297 Bangladesh 13323 C 672 672
298 Bangladesh 13324 T 672 672
299 Bangladesh 13325 A 672 672
300 Bangladesh 13326 C T 672 670 Thr4354Ile
301 Bangladesh 13327 A 672 672
302 Bangladesh 13328 A G 672 671 Thr4355Ala
303 Bangladesh 13329 C 672 671
304 Bangladesh 13330 T 672 671
305 Bangladesh 13331 T 672 671
306 Bangladesh 13332 G 672 671
307 Bangladesh 13333 T 672 670
308 Bangladesh 13334 G 672 670
309 Bangladesh 13335 C 672 670
310 Bangladesh 13336 T 672 670
311 Bangladesh 13337 A 672 670
312 Bangladesh 13338 A 672 670
313 Bangladesh 13339 T 672 670
314 Bangladesh 13340 G 672 670
315 Bangladesh 13341 A 672 670
316 Bangladesh 13342 C 672 670
317 Bangladesh 13343 C 672 670
318 Bangladesh 13344 C 672 669
319 Bangladesh 13345 T 675 674
320 Bangladesh 13346 G 675 674
321 Bangladesh 13347 T 675 674
322 Bangladesh 13348 G T 675 672 Val4361Val
323 Bangladesh 13349 G 675 674
324 Bangladesh 13350 G 675 675
325 Bangladesh 13351 T 675 675
326 Bangladesh 13352 T 675 675
327 Bangladesh 13353 T 675 675
328 Bangladesh 13354 T C 675 674 Phe4363Phe
329 Bangladesh 13355 A 675 675
330 Bangladesh 13356 C 675 675
331 Bangladesh 13357 A 674 674
332 Bangladesh 13358 C 674 674
333 Bangladesh 13359 T 674 673
334 Bangladesh 13360 T 673 672
335 Bangladesh 13361 A 673 672
336 Bangladesh 13362 A 673 672
337 Bangladesh 13363 A 673 672
338 Bangladesh 13364 A 661 655
339 Bangladesh 13365 A 661 655
340 Bangladesh 13366 C 661 655
341 Bangladesh 13367 A 661 655
342 Bangladesh 13368 C 661 655
343 Bangladesh 13369 A 661 655
344 Bangladesh 13370 G T 661 655 Val4369Phe
345 Bangladesh 13371 T 661 656
346 Bangladesh 13372 C 661 656
347 Bangladesh 13373 T 661 656
348 Bangladesh 13374 G 661 656
349 Bangladesh 13375 T 661 656
350 Bangladesh 13376 A 661 656
351 Bangladesh 13377 C 661 656
352 Bangladesh 13378 C 661 656
353 Bangladesh 13379 G A 661 655 Val4372Ile
354 Bangladesh 13380 T 661 655
355 Bangladesh 13381 C 661 655
356 Bangladesh 13382 T 661 655
357 Bangladesh 13383 G 661 656
358 Bangladesh 13384 C 661 656
359 Bangladesh 13385 G 661 658
360 Bangladesh 13386 G 661 658
361 Bangladesh 13387 T 661 658
362 Bangladesh 13388 A 661 658
363 Bangladesh 13389 T 661 658
364 Bangladesh 13390 G 661 660
365 Bangladesh 13391 T 661 660
366 Bangladesh 13392 G 661 660
367 Bangladesh 13393 G 661 660
368 Bangladesh 13394 A 661 660
369 Bangladesh 13395 A 661 660
370 Bangladesh 13396 A 661 660
371 Bangladesh 13397 G 661 661
372 Bangladesh 13398 G 661 661
373 Bangladesh 13399 T 661 661
374 Bangladesh 13400 T 661 661
375 Bangladesh 13401 A 659 659
376 Bangladesh 13402 T 659 659
377 Bangladesh 13403 G 659 659
378 Bangladesh 13404 G 659 659
379 Bangladesh 13405 C 659 659
380 Bangladesh 13406 T 659 659
381 Bangladesh 13407 G 659 659
382 Bangladesh 13408 T 659 659
383 Bangladesh 13409 A 659 659
384 Bangladesh 13410 G 659 659
385 Bangladesh 13411 T 659 659
386 Bangladesh 13412 T 659 659
387 Bangladesh 13413 G 659 659
388 Bangladesh 13414 T 659 659
389 Bangladesh 13415 G 659 659
390 Bangladesh 13416 A 659 659
391 Bangladesh 13417 T 659 659
392 Bangladesh 13418 C 659 659
393 Bangladesh 13419 A 659 659
394 Bangladesh 13420 A 659 659
395 Bangladesh 13421 C 659 659
396 Bangladesh 13422 T 659 658
397 Bangladesh 13423 C 659 659
398 Bangladesh 13424 C 659 659
399 Bangladesh 13425 G 659 659
400 Bangladesh 13426 C 659 659
401 Bangladesh 13427 G 659 659
402 Bangladesh 13428 A 659 659
403 Bangladesh 13429 A 659 658
404 Bangladesh 13430 C 659 659
405 Bangladesh 13431 C 659 659
406 Bangladesh 13432 C 658 657
407 Bangladesh 13433 A 658 658
408 Bangladesh 13434 T 658 658
409 Bangladesh 13435 G 658 658
410 Bangladesh 13436 C 658 658
411 Bangladesh 13437 T 657 657
412 Bangladesh 13438 T 657 657
413 Bangladesh 13439 C 657 657
414 Bangladesh 13440 A 657 657
415 Bangladesh 13441 G 657 657