National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38 2                             2   3    
C   39   4     1                     1        
D   21     3                                  
E   12       1                                
F   15         1                              
G   39                                        
H   9             1                          
I   12               2                        
K   24                             1          
L   24         1         2                    
M   12                                 1      
N   21             1         2       1 1      
P   24 1                 3     3     3        
Q   18                                        
R   6                             1 1        
S   18   1     1         1           1        
T   39               6       1       1 3      
V   27                   2               4    
W   3                                        
Y   15                                       2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Australia 13026 C 17200 17200
1 Australia 13027 T 17206 17206
2 Australia 13028 G 17217 17217
3 Australia 13029 G 17217 17215
4 Australia 13030 T 17227 17225
5 Australia 13031 A 17234 17233
6 Australia 13032 A 17241 17241
7 Australia 13033 T C 17241 17240 Asn4256Asn
8 Australia 13034 G 17241 17239
9 Australia 13035 C 17241 17240
10 Australia 13036 A 17241 17241
11 Australia 13037 A 17241 17241
12 Australia 13038 C 17242 17238
13 Australia 13039 A 17242 17241
14 Australia 13040 G 17242 17235
15 Australia 13041 A 17242 17240
16 Australia 13042 A 17244 17244
17 Australia 13043 G T 17244 17233 Val4260Leu
18 Australia 13044 T 17244 17243
19 Australia 13045 G 17244 17243
20 Australia 13046 C 17245 17245
21 Australia 13047 C T 17245 17241 Pro4261Leu
22 Australia 13048 T 17246 17246
23 Australia 13049 G 17246 17242
24 Australia 13050 C 17246 17243
25 Australia 13051 C T 17246 17220 Ala4262Ala
26 Australia 13052 A 17246 17246
27 Australia 13053 A 17246 17245
28 Australia 13054 T 17246 17243
29 Australia 13055 T 17246 17246
30 Australia 13056 C 17246 17243
31 Australia 13057 A 17246 17245
32 Australia 13058 A 17246 17245
33 Australia 13059 C T 17246 17241 Thr4265Ile
34 Australia 13060 T 17245 17244
35 Australia 13061 G 17245 17241
36 Australia 13062 T 17245 17244
37 Australia 13063 A G 17245 17243 Val4266Val
38 Australia 13064 T 17245 17244
39 Australia 13065 T 17246 17245
40 Australia 13066 A 17246 17245
41 Australia 13067 T 17246 17244
42 Australia 13068 C T 17246 17239 Ser4268Phe
43 Australia 13069 T 17245 17244
44 Australia 13070 T 17243 17241
45 Australia 13071 T 17243 17241
46 Australia 13072 C T 17242 17237 Phe4269Phe
47 Australia 13073 T 17242 17240
48 Australia 13074 G 17242 17238
49 Australia 13075 T 17233 17232
50 Australia 13076 G 17233 17232
51 Australia 13077 C 17233 17232
52 Australia 13078 T 17231 17222
53 Australia 13079 T 17231 17231
54 Australia 13080 T 17231 17231
55 Australia 13081 T 17231 17231
56 Australia 13082 G T 17231 17228 Ala4273Ser
57 Australia 13083 C 17232 17231
58 Australia 13084 T 17231 17231
59 Australia 13085 G 17232 17232
60 Australia 13086 T 17229 17229
61 Australia 13087 A 17229 17228
62 Australia 13088 G 17230 17228
63 Australia 13089 A 17228 17228
64 Australia 13090 T 17227 17227
65 Australia 13091 G 17222 17215
66 Australia 13092 C 17222 17222
67 Australia 13093 T 17222 17222
68 Australia 13094 G 17222 17219
69 Australia 13095 C T 17222 17219 Ala4277Val
70 Australia 13096 T 17222 17221
71 Australia 13097 A 17222 17221
72 Australia 13098 A 17222 17221
73 Australia 13099 A 17222 17221
74 Australia 13100 G 17222 17222
75 Australia 13101 C 17222 17222
76 Australia 13102 T 17222 17222
77 Australia 13103 T 17222 17222
78 Australia 13104 A 17222 17222
79 Australia 13105 C T 17222 17218 Tyr4280Tyr
80 Australia 13106 A 17222 17222
81 Australia 13107 A 17222 17221
82 Australia 13108 A 17222 17221
83 Australia 13109 G 17222 17221
84 Australia 13110 A 17222 17222
85 Australia 13111 T 17222 17220
86 Australia 13112 T 17222 17221
87 Australia 13113 A 17224 17222
88 Australia 13114 T 17224 17223
89 Australia 13115 C T 17224 17212 Leu4284Leu
90 Australia 13116 T 17224 17223
91 Australia 13117 A 17224 17223
92 Australia 13118 G T 17224 17214 Ala4285Ser
93 Australia 13119 C T 17224 17221 Ala4285Val
94 Australia 13120 T 17224 17224
95 Australia 13121 A 17224 17222
96 Australia 13122 G 17224 17222
97 Australia 13123 T 17224 17224
98 Australia 13124 G 17224 17212
99 Australia 13125 G 17224 17222
100 Australia 13126 G 17224 17222
101 Australia 13127 G 17224 17222
102 Australia 13128 G 17224 17220
103 Australia 13129 A 17224 17223
104 Australia 13130 C 17224 17221
105 Australia 13131 A 17224 17223
106 Australia 13132 A 17224 17224
107 Australia 13133 C T,G 17224 17218 Pro4290Ser-p.Pro4290Ala
108 Australia 13134 C 17224 17222
109 Australia 13135 A 17224 17222
110 Australia 13136 A 17224 17224
111 Australia 13137 T 17224 17222
112 Australia 13138 C T 17224 17220 Ile4291Ile
113 Australia 13139 A 17224 17224
114 Australia 13140 C 17224 17223
115 Australia 13141 T C 17224 17221 Thr4292Thr
116 Australia 13142 A 17224 17223
117 Australia 13143 A 17224 17217
118 Australia 13144 T 17224 17215
119 Australia 13145 T 17224 17215
120 Australia 13146 G 17224 17222
121 Australia 13147 T 17224 17222
122 Australia 13148 G 17224 17221
123 Australia 13149 T 17224 17223
124 Australia 13150 T C 17224 17222 Val4295Val
125 Australia 13151 A 17224 17223
126 Australia 13152 A G 17224 17222 Lys4296Arg
127 Australia 13153 G 17224 17221
128 Australia 13154 A 17224 17224
129 Australia 13155 T 17224 17223
130 Australia 13156 G 17224 17218
131 Australia 13157 T 17224 17223
132 Australia 13158 T 17224 17224
133 Australia 13159 G A 17224 17219 Leu4298Leu
134 Australia 13160 T 17224 17224
135 Australia 13161 G 17225 17125
136 Australia 13162 T 17225 17224
137 Australia 13163 A 17225 17224
138 Australia 13164 C 17225 17220
139 Australia 13165 A 17225 17225
140 Australia 13166 C 17225 17225
141 Australia 13167 A 17225 17224
142 Australia 13168 C 17225 17224
143 Australia 13169 A 17225 17224
144 Australia 13170 C 17226 17224
145 Australia 13171 T 17226 17225
146 Australia 13172 G 17226 17221
147 Australia 13173 G 17226 17226
148 Australia 13174 T 17226 17226
149 Australia 13175 A 17226 17225
150 Australia 13176 C T 17226 17223 Thr4304Ile
151 Australia 13177 T C 17226 17223 Thr4304Thr
152 Australia 13178 G 17226 17224
153 Australia 13179 G 17226 17223
154 Australia 13180 T 17226 17223
155 Australia 13181 C 17226 17222
156 Australia 13182 A 17227 17225
157 Australia 13183 G 17227 17224
158 Australia 13184 G 17227 17227
159 Australia 13185 C 17227 17227
160 Australia 13186 A 17227 17227
161 Australia 13187 A 17227 17227
162 Australia 13188 T 17227 17227
163 Australia 13189 A 17227 17227
164 Australia 13190 A 17227 17227
165 Australia 13191 C 17227 17224
166 Australia 13192 A 17227 17226
167 Australia 13193 G 17227 17096
168 Australia 13194 T 17227 17224
169 Australia 13195 T 17227 17227
170 Australia 13196 A 17227 17227
171 Australia 13197 C T 17227 17223 Thr4311Ile
172 Australia 13198 A 17227 17226
173 Australia 13199 C 17227 17226
174 Australia 13200 C 17227 17227
175 Australia 13201 G T 17227 17220 Pro4312Pro
176 Australia 13202 G 17227 17225
177 Australia 13203 A 17227 17227
178 Australia 13204 A G 17227 17226 Glu4313Glu
179 Australia 13205 G 17227 17225
180 Australia 13206 C 17226 17226
181 Australia 13207 C 17226 17226
182 Australia 13208 A C 17226 17224 Asn4315His
183 Australia 13209 A C 17226 17225 Asn4315Thr
184 Australia 13210 T C 17226 17224 Asn4315Asn
185 Australia 13211 A 17226 17225
186 Australia 13212 T C 17226 17224 Met4316Thr
187 Australia 13213 G 17226 17224
188 Australia 13214 G 17226 17224
189 Australia 13215 A 17226 17224
190 Australia 13216 T C 17226 17223 Asp4317Asp
191 Australia 13217 C 17226 17224
192 Australia 13218 A 17226 17225
193 Australia 13219 A 17226 17222
194 Australia 13220 G 17226 17218
195 Australia 13221 A 17226 17224
196 Australia 13222 A 17226 17224
197 Australia 13223 T 17226 17223
198 Australia 13224 C 17226 17224
199 Australia 13225 C 17226 17216
200 Australia 13226 T 17226 17221
201 Australia 13227 T 17226 17224
202 Australia 13228 T 17226 17224
203 Australia 13229 G 17226 17224
204 Australia 13230 G 17226 17224
205 Australia 13231 T 17228 17223
206 Australia 13232 G 17228 17221
207 Australia 13233 G 17228 17227
208 Australia 13234 T 17228 17227
209 Australia 13235 G 17228 17226
210 Australia 13236 C 17228 17226
211 Australia 13237 A 17228 17227
212 Australia 13238 T 17228 17228
213 Australia 13239 C T 17228 17112 Ser4325Leu
214 Australia 13240 G 17228 17069
215 Australia 13241 T 17228 17227
216 Australia 13242 G T 17228 17222 Cys4326Phe
217 Australia 13243 T 17228 17228
218 Australia 13244 T 17228 17228
219 Australia 13245 G 17228 17228
220 Australia 13246 T 17228 17225
221 Australia 13247 C 17228 17222
222 Australia 13248 T 17228 17225
223 Australia 13249 G 17228 17225
224 Australia 13250 T 17228 17224
225 Australia 13251 A 17228 17227
226 Australia 13252 C T 17228 17225 Tyr4329Tyr
227 Australia 13253 T 17228 17227
228 Australia 13254 G 17228 17224
229 Australia 13255 C T 17228 17222 Cys4330Cys
230 Australia 13256 C 17228 17226
231 Australia 13257 G 17228 17222
232 Australia 13258 T 17228 17223
233 Australia 13259 T 17228 17226
234 Australia 13260 G 17228 17225
235 Australia 13261 C T 17228 17220 Cys4332Cys
236 Australia 13262 C 17228 17227
237 Australia 13263 A 17228 17227
238 Australia 13264 C T 17228 17225 His4333His
239 Australia 13265 A 17228 17228
240 Australia 13266 T 17229 17229
241 Australia 13267 A T 17229 17226 Ile4334Ile
242 Australia 13268 G 17229 17225
243 Australia 13269 A 17229 17229
244 Australia 13270 T C 17229 17227 Asp4335Asp
245 Australia 13271 C 17229 17225
246 Australia 13272 A 17229 17229
247 Australia 13273 T 17229 17227
248 Australia 13274 C T 17230 17220 Pro4337Ser
249 Australia 13275 C T 17230 17225 Pro4337Leu
250 Australia 13276 A 17230 17229
251 Australia 13277 A 17230 17230
252 Australia 13278 A G 17230 17228 Asn4338Ser
253 Australia 13279 T 17230 17230
254 Australia 13280 C T 17230 17229 Pro4339Ser
255 Australia 13281 C 17230 17229
256 Australia 13282 T 17230 17229
257 Australia 13283 A 17230 17224
258 Australia 13284 A 17230 17229
259 Australia 13285 A 17230 17230
260 Australia 13286 G 17230 17228
261 Australia 13287 G 17230 17230
262 Australia 13288 A 17230 17228
263 Australia 13289 T 17230 17226
264 Australia 13290 T 17230 17230
265 Australia 13291 T 17230 17229
266 Australia 13292 T 17230 17230
267 Australia 13293 G 17230 17229
268 Australia 13294 T 17230 17228
269 Australia 13295 G 17230 17225
270 Australia 13296 A 17230 17230
271 Australia 13297 C T 17230 17220 Asp4344Asp
272 Australia 13298 T 17230 17226
273 Australia 13299 T 17230 17228
274 Australia 13300 A 17230 17226
275 Australia 13301 A 17230 17227
276 Australia 13302 A 17230 17228
277 Australia 13303 A 17230 17228
278 Australia 13304 G 17230 17223
279 Australia 13305 G 17230 17228
280 Australia 13306 T 17230 17228
281 Australia 13307 A 17230 17228
282 Australia 13308 A 17229 17227
283 Australia 13309 G 17229 17225
284 Australia 13310 T 17229 17226
285 Australia 13311 A 17229 17225
286 Australia 13312 T 17229 17225
287 Australia 13313 G 17229 17221
288 Australia 13314 T 17229 17226
289 Australia 13315 A 17229 17226
290 Australia 13316 C 17229 17222
291 Australia 13317 A 17229 17224
292 Australia 13318 A 17229 17224
293 Australia 13319 A 17229 17224
294 Australia 13320 T 17229 17224
295 Australia 13321 A 17229 17224
296 Australia 13322 C 17229 17221
297 Australia 13323 C 17229 17221
298 Australia 13324 T C 17229 17222 Pro4353Pro
299 Australia 13325 A 17229 17221
300 Australia 13326 C 17228 17222
301 Australia 13327 A 17228 17220
302 Australia 13328 A 17228 17221
303 Australia 13329 C 17228 17221
304 Australia 13330 T 17228 17222
305 Australia 13331 T 17228 17218
306 Australia 13332 G 17228 17217
307 Australia 13333 T 17228 17222
308 Australia 13334 G 17228 17222
309 Australia 13335 C T 17228 17216 Ala4357Val
310 Australia 13336 T C 17228 17223 Ala4357Ala
311 Australia 13337 A 17228 17224
312 Australia 13338 A 17228 17225
313 Australia 13339 T 17228 17224
314 Australia 13340 G 17228 17224
315 Australia 13341 A 17228 17225
316 Australia 13342 C 17228 17225
317 Australia 13343 C 17228 17224
318 Australia 13344 C 17228 17221
319 Australia 13345 T C 17230 17227 Pro4360Pro
320 Australia 13346 G T 17230 17221 Val4361Leu
321 Australia 13347 T 17230 17228
322 Australia 13348 G T,A 17230 17219 Val4361Val-p.Val4361Val
323 Australia 13349 G 17230 17227
324 Australia 13350 G 17230 17228
325 Australia 13351 T 17230 17228
326 Australia 13352 T 17230 17228
327 Australia 13353 T 17230 17229
328 Australia 13354 T 17230 17229
329 Australia 13355 A T 17230 17228 Thr4364Ser
330 Australia 13356 C T 17230 17222 Thr4364Ile
331 Australia 13357 A 17230 17230
332 Australia 13358 C 17231 17229
333 Australia 13359 T 17231 17230
334 Australia 13360 T 17233 17233
335 Australia 13361 A 17233 17230
336 Australia 13362 A 17233 17231
337 Australia 13363 A 17233 17232
338 Australia 13364 A 17197 17183
339 Australia 13365 A 17196 17184
340 Australia 13366 C 17196 17184
341 Australia 13367 A 17194 17183
342 Australia 13368 C T 17194 17182 Thr4368Ile
343 Australia 13369 A 17193 17183
344 Australia 13370 G 17193 17185
345 Australia 13371 T 17192 17185
346 Australia 13372 C 17190 17181
347 Australia 13373 T 17188 17181
348 Australia 13374 G 17187 17179
349 Australia 13375 T 17187 17180
350 Australia 13376 A 17187 17180
351 Australia 13377 C T,A 17187 17178 Thr4371Ile-p.Thr4371Asn
352 Australia 13378 C T 17131 17119 Thr4371Thr
353 Australia 13379 G 16615 16561
354 Australia 13380 T 16173 16060
355 Australia 13381 C 16160 16041
356 Australia 13382 T 16149 16025
357 Australia 13383 G C 16129 16002 Cys4373Ser
358 Australia 13384 C T 16128 16003 Cys4373Cys
359 Australia 13385 G 16124 16003
360 Australia 13386 G 16111 16000
361 Australia 13387 T 16101 16008
362 Australia 13388 A 16075 15965
363 Australia 13389 T 16068 15956
364 Australia 13390 G 16067 15965
365 Australia 13391 T 16067 15971
366 Australia 13392 G 16057 15955
367 Australia 13393 G 16056 15959
368 Australia 13394 A 16053 15936
369 Australia 13395 A 16048 15946
370 Australia 13396 A 16048 15946
371 Australia 13397 G 16049 15987
372 Australia 13398 G 16047 15988
373 Australia 13399 T 16047 15992
374 Australia 13400 T 16043 15985
375 Australia 13401 A 16043 15999
376 Australia 13402 T 16043 16005
377 Australia 13403 G 16043 16007
378 Australia 13404 G 16041 16006
379 Australia 13405 C 16042 16022
380 Australia 13406 T 16035 16016
381 Australia 13407 G 16035 16018
382 Australia 13408 T C 16034 16018 Cys4381Cys
383 Australia 13409 A T 16034 16018 Ser4382Cys
384 Australia 13410 G 16032 16020
385 Australia 13411 T C 16031 16022 Ser4382Ser
386 Australia 13412 T 16031 16024
387 Australia 13413 G 16031 16020
388 Australia 13414 T 16029 16026
389 Australia 13415 G 16029 16027
390 Australia 13416 A 16029 16029
391 Australia 13417 T 16029 16026
392 Australia 13418 C 16029 16028
393 Australia 13419 A 16025 16025
394 Australia 13420 A 16025 16025
395 Australia 13421 C T 16025 16024 Leu4386Phe
396 Australia 13422 T 16022 16020
397 Australia 13423 C 16022 16021
398 Australia 13424 C A 16021 16018 Arg4387Ser
399 Australia 13425 G 16020 16018
400 Australia 13426 C T 16019 16012 Arg4387Arg
401 Australia 13427 G 16018 16017
402 Australia 13428 A 16016 16015
403 Australia 13429 A 16014 16012
404 Australia 13430 C 16013 16013
405 Australia 13431 C T 16013 16012 Pro4389Leu
406 Australia 13432 C 16013 16010
407 Australia 13433 A 16013 16011
408 Australia 13434 T 16012 16010
409 Australia 13435 G 16012 16009
410 Australia 13436 C 16012 16011
411 Australia 13437 T 16010 16009
412 Australia 13438 T 16009 16008
413 Australia 13439 C 16005 16005
414 Australia 13440 A 16005 16002
415 Australia 13441 G 16002 16002