National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Aruba 13026 C 11 11
1 Aruba 13027 T 11 11
2 Aruba 13028 G 11 11
3 Aruba 13029 G 11 11
4 Aruba 13030 T 11 11
5 Aruba 13031 A 11 11
6 Aruba 13032 A 11 11
7 Aruba 13033 T 11 11
8 Aruba 13034 G 11 11
9 Aruba 13035 C 11 11
10 Aruba 13036 A 11 11
11 Aruba 13037 A 11 11
12 Aruba 13038 C 11 11
13 Aruba 13039 A 11 11
14 Aruba 13040 G 11 11
15 Aruba 13041 A 11 11
16 Aruba 13042 A 11 11
17 Aruba 13043 G 11 11
18 Aruba 13044 T 11 11
19 Aruba 13045 G 11 11
20 Aruba 13046 C 11 11
21 Aruba 13047 C 11 11
22 Aruba 13048 T 11 11
23 Aruba 13049 G 11 11
24 Aruba 13050 C 11 11
25 Aruba 13051 C 11 11
26 Aruba 13052 A 11 11
27 Aruba 13053 A 11 11
28 Aruba 13054 T 11 11
29 Aruba 13055 T 11 11
30 Aruba 13056 C 11 11
31 Aruba 13057 A 11 11
32 Aruba 13058 A 11 11
33 Aruba 13059 C 11 11
34 Aruba 13060 T 11 11
35 Aruba 13061 G 11 11
36 Aruba 13062 T 11 11
37 Aruba 13063 A 11 11
38 Aruba 13064 T 11 11
39 Aruba 13065 T 11 11
40 Aruba 13066 A 11 11
41 Aruba 13067 T 11 11
42 Aruba 13068 C 11 11
43 Aruba 13069 T 11 11
44 Aruba 13070 T 11 11
45 Aruba 13071 T 11 11
46 Aruba 13072 C 11 11
47 Aruba 13073 T 11 11
48 Aruba 13074 G 11 11
49 Aruba 13075 T 11 11
50 Aruba 13076 G 11 11
51 Aruba 13077 C 11 11
52 Aruba 13078 T 11 11
53 Aruba 13079 T 11 11
54 Aruba 13080 T 11 11
55 Aruba 13081 T 11 11
56 Aruba 13082 G 11 11
57 Aruba 13083 C 11 11
58 Aruba 13084 T 11 11
59 Aruba 13085 G 11 11
60 Aruba 13086 T 11 11
61 Aruba 13087 A 11 11
62 Aruba 13088 G 11 11
63 Aruba 13089 A 11 11
64 Aruba 13090 T 11 11
65 Aruba 13091 G 11 11
66 Aruba 13092 C 11 11
67 Aruba 13093 T 11 11
68 Aruba 13094 G 11 11
69 Aruba 13095 C 11 11
70 Aruba 13096 T 11 11
71 Aruba 13097 A 11 11
72 Aruba 13098 A 11 11
73 Aruba 13099 A 11 11
74 Aruba 13100 G 11 11
75 Aruba 13101 C 11 11
76 Aruba 13102 T 11 11
77 Aruba 13103 T 11 11
78 Aruba 13104 A 11 11
79 Aruba 13105 C 11 11
80 Aruba 13106 A 11 11
81 Aruba 13107 A 11 11
82 Aruba 13108 A 11 11
83 Aruba 13109 G 11 11
84 Aruba 13110 A 11 11
85 Aruba 13111 T 11 11
86 Aruba 13112 T 11 11
87 Aruba 13113 A 11 11
88 Aruba 13114 T 11 11
89 Aruba 13115 C 11 11
90 Aruba 13116 T 11 11
91 Aruba 13117 A 11 11
92 Aruba 13118 G 11 11
93 Aruba 13119 C 11 11
94 Aruba 13120 T 11 11
95 Aruba 13121 A 11 11
96 Aruba 13122 G 11 11
97 Aruba 13123 T 11 11
98 Aruba 13124 G 11 11
99 Aruba 13125 G 11 11
100 Aruba 13126 G 11 11
101 Aruba 13127 G 11 11
102 Aruba 13128 G 11 11
103 Aruba 13129 A 11 11
104 Aruba 13130 C 11 11
105 Aruba 13131 A 11 11
106 Aruba 13132 A 11 11
107 Aruba 13133 C 11 11
108 Aruba 13134 C 11 11
109 Aruba 13135 A 11 11
110 Aruba 13136 A 11 11
111 Aruba 13137 T 11 11
112 Aruba 13138 C 11 11
113 Aruba 13139 A 11 11
114 Aruba 13140 C 11 11
115 Aruba 13141 T 11 11
116 Aruba 13142 A 11 11
117 Aruba 13143 A 11 11
118 Aruba 13144 T 11 11
119 Aruba 13145 T 11 11
120 Aruba 13146 G 11 11
121 Aruba 13147 T 11 11
122 Aruba 13148 G 11 11
123 Aruba 13149 T 11 11
124 Aruba 13150 T 11 11
125 Aruba 13151 A 11 11
126 Aruba 13152 A 11 11
127 Aruba 13153 G 11 11
128 Aruba 13154 A 11 11
129 Aruba 13155 T 11 11
130 Aruba 13156 G 11 11
131 Aruba 13157 T 11 11
132 Aruba 13158 T 11 11
133 Aruba 13159 G 11 11
134 Aruba 13160 T 11 11
135 Aruba 13161 G 11 11
136 Aruba 13162 T 11 11
137 Aruba 13163 A 11 11
138 Aruba 13164 C 11 11
139 Aruba 13165 A 11 11
140 Aruba 13166 C 11 11
141 Aruba 13167 A 11 11
142 Aruba 13168 C 11 11
143 Aruba 13169 A 11 11
144 Aruba 13170 C 11 11
145 Aruba 13171 T 11 11
146 Aruba 13172 G 11 11
147 Aruba 13173 G 11 11
148 Aruba 13174 T 11 11
149 Aruba 13175 A 11 11
150 Aruba 13176 C 11 11
151 Aruba 13177 T 11 11
152 Aruba 13178 G 11 11
153 Aruba 13179 G 11 11
154 Aruba 13180 T 11 11
155 Aruba 13181 C 11 11
156 Aruba 13182 A 11 11
157 Aruba 13183 G 11 11
158 Aruba 13184 G 11 11
159 Aruba 13185 C 11 11
160 Aruba 13186 A 11 11
161 Aruba 13187 A 11 11
162 Aruba 13188 T 11 11
163 Aruba 13189 A 11 11
164 Aruba 13190 A 11 11
165 Aruba 13191 C 11 11
166 Aruba 13192 A 11 11
167 Aruba 13193 G 11 11
168 Aruba 13194 T 11 11
169 Aruba 13195 T 11 11
170 Aruba 13196 A 11 11
171 Aruba 13197 C 11 11
172 Aruba 13198 A 11 11
173 Aruba 13199 C 11 11
174 Aruba 13200 C 11 11
175 Aruba 13201 G 11 11
176 Aruba 13202 G 11 11
177 Aruba 13203 A 11 11
178 Aruba 13204 A 11 11
179 Aruba 13205 G 11 11
180 Aruba 13206 C 11 11
181 Aruba 13207 C 11 11
182 Aruba 13208 A 11 11
183 Aruba 13209 A 11 11
184 Aruba 13210 T 11 11
185 Aruba 13211 A 11 11
186 Aruba 13212 T 11 11
187 Aruba 13213 G 11 11
188 Aruba 13214 G 11 11
189 Aruba 13215 A 11 11
190 Aruba 13216 T 11 11
191 Aruba 13217 C 11 11
192 Aruba 13218 A 11 11
193 Aruba 13219 A 11 11
194 Aruba 13220 G 11 11
195 Aruba 13221 A 11 11
196 Aruba 13222 A 11 11
197 Aruba 13223 T 11 11
198 Aruba 13224 C 11 11
199 Aruba 13225 C 11 11
200 Aruba 13226 T 11 11
201 Aruba 13227 T 11 11
202 Aruba 13228 T 11 11
203 Aruba 13229 G 11 11
204 Aruba 13230 G 11 11
205 Aruba 13231 T 11 11
206 Aruba 13232 G 11 11
207 Aruba 13233 G 11 11
208 Aruba 13234 T 11 11
209 Aruba 13235 G 11 11
210 Aruba 13236 C 11 11
211 Aruba 13237 A 11 11
212 Aruba 13238 T 11 11
213 Aruba 13239 C 11 11
214 Aruba 13240 G 11 11
215 Aruba 13241 T 11 11
216 Aruba 13242 G 11 11
217 Aruba 13243 T 11 11
218 Aruba 13244 T 11 11
219 Aruba 13245 G 11 11
220 Aruba 13246 T 11 11
221 Aruba 13247 C 11 11
222 Aruba 13248 T 11 11
223 Aruba 13249 G 11 11
224 Aruba 13250 T 11 11
225 Aruba 13251 A 11 11
226 Aruba 13252 C 11 11
227 Aruba 13253 T 11 11
228 Aruba 13254 G 11 11
229 Aruba 13255 C 11 11
230 Aruba 13256 C 11 11
231 Aruba 13257 G 11 11
232 Aruba 13258 T 11 11
233 Aruba 13259 T 11 11
234 Aruba 13260 G 11 11
235 Aruba 13261 C 11 11
236 Aruba 13262 C 11 11
237 Aruba 13263 A 11 11
238 Aruba 13264 C 11 11
239 Aruba 13265 A 11 11
240 Aruba 13266 T 11 11
241 Aruba 13267 A 11 11
242 Aruba 13268 G 11 11
243 Aruba 13269 A 11 11
244 Aruba 13270 T 11 11
245 Aruba 13271 C 11 11
246 Aruba 13272 A 11 11
247 Aruba 13273 T 11 11
248 Aruba 13274 C 11 11
249 Aruba 13275 C 11 11
250 Aruba 13276 A 11 11
251 Aruba 13277 A 11 11
252 Aruba 13278 A 11 11
253 Aruba 13279 T 11 11
254 Aruba 13280 C 11 11
255 Aruba 13281 C 11 11
256 Aruba 13282 T 11 11
257 Aruba 13283 A 11 11
258 Aruba 13284 A 11 11
259 Aruba 13285 A 11 11
260 Aruba 13286 G 11 11
261 Aruba 13287 G 11 11
262 Aruba 13288 A 11 11
263 Aruba 13289 T 11 11
264 Aruba 13290 T 11 11
265 Aruba 13291 T 11 11
266 Aruba 13292 T 11 11
267 Aruba 13293 G 11 11
268 Aruba 13294 T 11 11
269 Aruba 13295 G 11 11
270 Aruba 13296 A 11 11
271 Aruba 13297 C 11 11
272 Aruba 13298 T 11 11
273 Aruba 13299 T 11 11
274 Aruba 13300 A 11 11
275 Aruba 13301 A 11 11
276 Aruba 13302 A 11 11
277 Aruba 13303 A 11 11
278 Aruba 13304 G 11 11
279 Aruba 13305 G 11 11
280 Aruba 13306 T 11 11
281 Aruba 13307 A 11 11
282 Aruba 13308 A 11 11
283 Aruba 13309 G 11 11
284 Aruba 13310 T 11 11
285 Aruba 13311 A 11 11
286 Aruba 13312 T 11 11
287 Aruba 13313 G 11 11
288 Aruba 13314 T 11 11
289 Aruba 13315 A 11 11
290 Aruba 13316 C 11 11
291 Aruba 13317 A 11 11
292 Aruba 13318 A 11 11
293 Aruba 13319 A 11 11
294 Aruba 13320 T 11 11
295 Aruba 13321 A 11 11
296 Aruba 13322 C 11 11
297 Aruba 13323 C 11 11
298 Aruba 13324 T 11 11
299 Aruba 13325 A 11 11
300 Aruba 13326 C 11 11
301 Aruba 13327 A 11 11
302 Aruba 13328 A 11 11
303 Aruba 13329 C 11 11
304 Aruba 13330 T 11 11
305 Aruba 13331 T 11 11
306 Aruba 13332 G 11 11
307 Aruba 13333 T 11 11
308 Aruba 13334 G 11 11
309 Aruba 13335 C 11 11
310 Aruba 13336 T 11 11
311 Aruba 13337 A 11 11
312 Aruba 13338 A 11 11
313 Aruba 13339 T 11 11
314 Aruba 13340 G 11 11
315 Aruba 13341 A 11 11
316 Aruba 13342 C 11 11
317 Aruba 13343 C 11 11
318 Aruba 13344 C 11 11
319 Aruba 13345 T 11 11
320 Aruba 13346 G 11 11
321 Aruba 13347 T 11 11
322 Aruba 13348 G 11 11
323 Aruba 13349 G 11 11
324 Aruba 13350 G 11 11
325 Aruba 13351 T 11 11
326 Aruba 13352 T 11 11
327 Aruba 13353 T 11 11
328 Aruba 13354 T 11 11
329 Aruba 13355 A 11 11
330 Aruba 13356 C 11 11
331 Aruba 13357 A 11 11
332 Aruba 13358 C 11 11
333 Aruba 13359 T 11 11
334 Aruba 13360 T 11 11
335 Aruba 13361 A 11 11
336 Aruba 13362 A 11 11
337 Aruba 13363 A 11 11
338 Aruba 13364 A 11 11
339 Aruba 13365 A 11 11
340 Aruba 13366 C 11 11
341 Aruba 13367 A 11 11
342 Aruba 13368 C 11 11
343 Aruba 13369 A 11 11
344 Aruba 13370 G 11 11
345 Aruba 13371 T 11 11
346 Aruba 13372 C 11 11
347 Aruba 13373 T 11 11
348 Aruba 13374 G 11 11
349 Aruba 13375 T 11 11
350 Aruba 13376 A 11 11
351 Aruba 13377 C 11 11
352 Aruba 13378 C 11 11
353 Aruba 13379 G 11 11
354 Aruba 13380 T 11 11
355 Aruba 13381 C 11 11
356 Aruba 13382 T 11 11
357 Aruba 13383 G 11 11
358 Aruba 13384 C 11 11
359 Aruba 13385 G 11 11
360 Aruba 13386 G 11 11
361 Aruba 13387 T 11 11
362 Aruba 13388 A 11 11
363 Aruba 13389 T 11 11
364 Aruba 13390 G 11 11
365 Aruba 13391 T 11 11
366 Aruba 13392 G 11 11
367 Aruba 13393 G 11 11
368 Aruba 13394 A 11 11
369 Aruba 13395 A 11 11
370 Aruba 13396 A 11 11
371 Aruba 13397 G 11 11
372 Aruba 13398 G 11 11
373 Aruba 13399 T 11 11
374 Aruba 13400 T 11 11
375 Aruba 13401 A 11 11
376 Aruba 13402 T 11 11
377 Aruba 13403 G 11 11
378 Aruba 13404 G 11 11
379 Aruba 13405 C 11 11
380 Aruba 13406 T 11 11
381 Aruba 13407 G 11 11
382 Aruba 13408 T 11 11
383 Aruba 13409 A 11 11
384 Aruba 13410 G 11 11
385 Aruba 13411 T 11 11
386 Aruba 13412 T 11 11
387 Aruba 13413 G 11 11
388 Aruba 13414 T 11 11
389 Aruba 13415 G 11 11
390 Aruba 13416 A 11 11
391 Aruba 13417 T 11 11
392 Aruba 13418 C 11 11
393 Aruba 13419 A 11 11
394 Aruba 13420 A 11 11
395 Aruba 13421 C 11 11
396 Aruba 13422 T 11 11
397 Aruba 13423 C 11 11
398 Aruba 13424 C 11 11
399 Aruba 13425 G 11 11
400 Aruba 13426 C 11 11
401 Aruba 13427 G 11 11
402 Aruba 13428 A 11 11
403 Aruba 13429 A 11 11
404 Aruba 13430 C 11 11
405 Aruba 13431 C 11 11
406 Aruba 13432 C 11 11
407 Aruba 13433 A 11 11
408 Aruba 13434 T 11 11
409 Aruba 13435 G 11 11
410 Aruba 13436 C 11 11
411 Aruba 13437 T 11 11
412 Aruba 13438 T 11 11
413 Aruba 13439 C 11 11
414 Aruba 13440 A 11 11
415 Aruba 13441 G 11 11