National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Armenia 13026 C 3 3
1 Armenia 13027 T 3 3
2 Armenia 13028 G 3 3
3 Armenia 13029 G 3 3
4 Armenia 13030 T 3 3
5 Armenia 13031 A 3 3
6 Armenia 13032 A 3 3
7 Armenia 13033 T 3 3
8 Armenia 13034 G 3 3
9 Armenia 13035 C 3 3
10 Armenia 13036 A 3 3
11 Armenia 13037 A 3 3
12 Armenia 13038 C 3 3
13 Armenia 13039 A 3 3
14 Armenia 13040 G 3 3
15 Armenia 13041 A 3 3
16 Armenia 13042 A 3 3
17 Armenia 13043 G 3 3
18 Armenia 13044 T 3 3
19 Armenia 13045 G 3 3
20 Armenia 13046 C 3 3
21 Armenia 13047 C 3 3
22 Armenia 13048 T 3 3
23 Armenia 13049 G 3 3
24 Armenia 13050 C 3 3
25 Armenia 13051 C 3 3
26 Armenia 13052 A 3 3
27 Armenia 13053 A 3 3
28 Armenia 13054 T 3 3
29 Armenia 13055 T 3 3
30 Armenia 13056 C 3 3
31 Armenia 13057 A 3 3
32 Armenia 13058 A 3 3
33 Armenia 13059 C 3 3
34 Armenia 13060 T 3 3
35 Armenia 13061 G 3 3
36 Armenia 13062 T 3 3
37 Armenia 13063 A 3 3
38 Armenia 13064 T 3 3
39 Armenia 13065 T 3 3
40 Armenia 13066 A 3 3
41 Armenia 13067 T 3 3
42 Armenia 13068 C 3 3
43 Armenia 13069 T 3 3
44 Armenia 13070 T 3 3
45 Armenia 13071 T 3 3
46 Armenia 13072 C 3 3
47 Armenia 13073 T 3 3
48 Armenia 13074 G 3 3
49 Armenia 13075 T 3 3
50 Armenia 13076 G 3 3
51 Armenia 13077 C 3 3
52 Armenia 13078 T 3 3
53 Armenia 13079 T 3 3
54 Armenia 13080 T 3 3
55 Armenia 13081 T 3 3
56 Armenia 13082 G 3 3
57 Armenia 13083 C 3 3
58 Armenia 13084 T 3 3
59 Armenia 13085 G 3 3
60 Armenia 13086 T 3 3
61 Armenia 13087 A 3 3
62 Armenia 13088 G 3 3
63 Armenia 13089 A 3 3
64 Armenia 13090 T 3 3
65 Armenia 13091 G 3 3
66 Armenia 13092 C 3 3
67 Armenia 13093 T 3 3
68 Armenia 13094 G 3 3
69 Armenia 13095 C 3 3
70 Armenia 13096 T 3 3
71 Armenia 13097 A 3 3
72 Armenia 13098 A 3 3
73 Armenia 13099 A 3 3
74 Armenia 13100 G 3 3
75 Armenia 13101 C 3 3
76 Armenia 13102 T 3 3
77 Armenia 13103 T 3 3
78 Armenia 13104 A 3 3
79 Armenia 13105 C 3 3
80 Armenia 13106 A 3 3
81 Armenia 13107 A 3 3
82 Armenia 13108 A 3 3
83 Armenia 13109 G 3 3
84 Armenia 13110 A 3 3
85 Armenia 13111 T 3 3
86 Armenia 13112 T 3 3
87 Armenia 13113 A 3 3
88 Armenia 13114 T 3 3
89 Armenia 13115 C 3 3
90 Armenia 13116 T 3 3
91 Armenia 13117 A 3 3
92 Armenia 13118 G 3 3
93 Armenia 13119 C 3 3
94 Armenia 13120 T 3 3
95 Armenia 13121 A 3 3
96 Armenia 13122 G 3 3
97 Armenia 13123 T 3 3
98 Armenia 13124 G 3 3
99 Armenia 13125 G 3 3
100 Armenia 13126 G 3 3
101 Armenia 13127 G 3 3
102 Armenia 13128 G 3 3
103 Armenia 13129 A 3 3
104 Armenia 13130 C 3 3
105 Armenia 13131 A 3 3
106 Armenia 13132 A 3 3
107 Armenia 13133 C 3 3
108 Armenia 13134 C 3 3
109 Armenia 13135 A 3 3
110 Armenia 13136 A 3 3
111 Armenia 13137 T 3 3
112 Armenia 13138 C 3 3
113 Armenia 13139 A 3 3
114 Armenia 13140 C 3 3
115 Armenia 13141 T 3 3
116 Armenia 13142 A 3 3
117 Armenia 13143 A 3 3
118 Armenia 13144 T 3 3
119 Armenia 13145 T 3 3
120 Armenia 13146 G 3 3
121 Armenia 13147 T 3 3
122 Armenia 13148 G 3 3
123 Armenia 13149 T 3 3
124 Armenia 13150 T 3 3
125 Armenia 13151 A 3 3
126 Armenia 13152 A 3 3
127 Armenia 13153 G 3 3
128 Armenia 13154 A 3 3
129 Armenia 13155 T 3 3
130 Armenia 13156 G 3 3
131 Armenia 13157 T 3 3
132 Armenia 13158 T 3 3
133 Armenia 13159 G 3 3
134 Armenia 13160 T 3 3
135 Armenia 13161 G 3 3
136 Armenia 13162 T 3 3
137 Armenia 13163 A 3 3
138 Armenia 13164 C 3 3
139 Armenia 13165 A 3 3
140 Armenia 13166 C 3 3
141 Armenia 13167 A 3 3
142 Armenia 13168 C 3 3
143 Armenia 13169 A 3 3
144 Armenia 13170 C 3 3
145 Armenia 13171 T 3 3
146 Armenia 13172 G 3 3
147 Armenia 13173 G 3 3
148 Armenia 13174 T 3 3
149 Armenia 13175 A 3 3
150 Armenia 13176 C 3 3
151 Armenia 13177 T 3 3
152 Armenia 13178 G 3 3
153 Armenia 13179 G 3 3
154 Armenia 13180 T 3 3
155 Armenia 13181 C 3 3
156 Armenia 13182 A 3 3
157 Armenia 13183 G 3 3
158 Armenia 13184 G 3 3
159 Armenia 13185 C 3 3
160 Armenia 13186 A 3 3
161 Armenia 13187 A 3 3
162 Armenia 13188 T 3 3
163 Armenia 13189 A 3 3
164 Armenia 13190 A 3 3
165 Armenia 13191 C 3 3
166 Armenia 13192 A 3 3
167 Armenia 13193 G 3 3
168 Armenia 13194 T 3 3
169 Armenia 13195 T 3 3
170 Armenia 13196 A 3 3
171 Armenia 13197 C 3 3
172 Armenia 13198 A 3 3
173 Armenia 13199 C 3 3
174 Armenia 13200 C 3 3
175 Armenia 13201 G 3 3
176 Armenia 13202 G 3 3
177 Armenia 13203 A 3 3
178 Armenia 13204 A 3 3
179 Armenia 13205 G 3 3
180 Armenia 13206 C 3 3
181 Armenia 13207 C 3 3
182 Armenia 13208 A 3 3
183 Armenia 13209 A 3 3
184 Armenia 13210 T 3 3
185 Armenia 13211 A 3 3
186 Armenia 13212 T 3 3
187 Armenia 13213 G 3 3
188 Armenia 13214 G 3 3
189 Armenia 13215 A 3 3
190 Armenia 13216 T 3 3
191 Armenia 13217 C 3 3
192 Armenia 13218 A 3 3
193 Armenia 13219 A 3 3
194 Armenia 13220 G 3 3
195 Armenia 13221 A 3 3
196 Armenia 13222 A 3 3
197 Armenia 13223 T 3 3
198 Armenia 13224 C 3 3
199 Armenia 13225 C 3 3
200 Armenia 13226 T 3 3
201 Armenia 13227 T 3 3
202 Armenia 13228 T 3 3
203 Armenia 13229 G 3 3
204 Armenia 13230 G 3 3
205 Armenia 13231 T 3 3
206 Armenia 13232 G 3 3
207 Armenia 13233 G 3 3
208 Armenia 13234 T 3 3
209 Armenia 13235 G 3 3
210 Armenia 13236 C 3 3
211 Armenia 13237 A 3 3
212 Armenia 13238 T 3 3
213 Armenia 13239 C 3 3
214 Armenia 13240 G 3 3
215 Armenia 13241 T 3 3
216 Armenia 13242 G 3 3
217 Armenia 13243 T 3 3
218 Armenia 13244 T 3 3
219 Armenia 13245 G 3 3
220 Armenia 13246 T 3 3
221 Armenia 13247 C 3 3
222 Armenia 13248 T 3 3
223 Armenia 13249 G 3 3
224 Armenia 13250 T 3 3
225 Armenia 13251 A 3 3
226 Armenia 13252 C 3 3
227 Armenia 13253 T 3 3
228 Armenia 13254 G 3 3
229 Armenia 13255 C 3 3
230 Armenia 13256 C 3 3
231 Armenia 13257 G 3 3
232 Armenia 13258 T 3 3
233 Armenia 13259 T 3 3
234 Armenia 13260 G 3 3
235 Armenia 13261 C 3 3
236 Armenia 13262 C 3 3
237 Armenia 13263 A 3 3
238 Armenia 13264 C 3 3
239 Armenia 13265 A 3 3
240 Armenia 13266 T 3 3
241 Armenia 13267 A 3 3
242 Armenia 13268 G 3 3
243 Armenia 13269 A 3 3
244 Armenia 13270 T 3 3
245 Armenia 13271 C 3 3
246 Armenia 13272 A 3 3
247 Armenia 13273 T 3 3
248 Armenia 13274 C 3 3
249 Armenia 13275 C 3 3
250 Armenia 13276 A 3 3
251 Armenia 13277 A 3 3
252 Armenia 13278 A 3 3
253 Armenia 13279 T 3 3
254 Armenia 13280 C 3 3
255 Armenia 13281 C 3 3
256 Armenia 13282 T 3 3
257 Armenia 13283 A 3 3
258 Armenia 13284 A 3 3
259 Armenia 13285 A 3 3
260 Armenia 13286 G 3 3
261 Armenia 13287 G 3 3
262 Armenia 13288 A 3 3
263 Armenia 13289 T 3 3
264 Armenia 13290 T 3 3
265 Armenia 13291 T 3 3
266 Armenia 13292 T 3 3
267 Armenia 13293 G 3 3
268 Armenia 13294 T 3 3
269 Armenia 13295 G 3 3
270 Armenia 13296 A 3 3
271 Armenia 13297 C 3 3
272 Armenia 13298 T 3 3
273 Armenia 13299 T 3 3
274 Armenia 13300 A 3 3
275 Armenia 13301 A 3 3
276 Armenia 13302 A 3 3
277 Armenia 13303 A 3 3
278 Armenia 13304 G 3 3
279 Armenia 13305 G 3 3
280 Armenia 13306 T 3 3
281 Armenia 13307 A 3 3
282 Armenia 13308 A 3 3
283 Armenia 13309 G 3 3
284 Armenia 13310 T 3 3
285 Armenia 13311 A 3 3
286 Armenia 13312 T 3 3
287 Armenia 13313 G 3 3
288 Armenia 13314 T 3 3
289 Armenia 13315 A 3 3
290 Armenia 13316 C 3 3
291 Armenia 13317 A 3 3
292 Armenia 13318 A 3 3
293 Armenia 13319 A 3 3
294 Armenia 13320 T 3 3
295 Armenia 13321 A 3 3
296 Armenia 13322 C 3 3
297 Armenia 13323 C 3 3
298 Armenia 13324 T 3 3
299 Armenia 13325 A 3 3
300 Armenia 13326 C 3 3
301 Armenia 13327 A 3 3
302 Armenia 13328 A 3 3
303 Armenia 13329 C 3 3
304 Armenia 13330 T 3 3
305 Armenia 13331 T 3 3
306 Armenia 13332 G 3 3
307 Armenia 13333 T 3 3
308 Armenia 13334 G 3 3
309 Armenia 13335 C 3 3
310 Armenia 13336 T 3 3
311 Armenia 13337 A 3 3
312 Armenia 13338 A 3 3
313 Armenia 13339 T 3 3
314 Armenia 13340 G 3 3
315 Armenia 13341 A 3 3
316 Armenia 13342 C 3 3
317 Armenia 13343 C 3 3
318 Armenia 13344 C 3 3
319 Armenia 13345 T 3 3
320 Armenia 13346 G 3 3
321 Armenia 13347 T 3 3
322 Armenia 13348 G 3 3
323 Armenia 13349 G 3 3
324 Armenia 13350 G 3 3
325 Armenia 13351 T 3 3
326 Armenia 13352 T 3 3
327 Armenia 13353 T 3 3
328 Armenia 13354 T 3 3
329 Armenia 13355 A 3 3
330 Armenia 13356 C 3 3
331 Armenia 13357 A 3 3
332 Armenia 13358 C 3 3
333 Armenia 13359 T 3 3
334 Armenia 13360 T 3 3
335 Armenia 13361 A 3 3
336 Armenia 13362 A 3 3
337 Armenia 13363 A 3 3
338 Armenia 13364 A 3 3
339 Armenia 13365 A 3 3
340 Armenia 13366 C 3 3
341 Armenia 13367 A 3 3
342 Armenia 13368 C 3 3
343 Armenia 13369 A 3 3
344 Armenia 13370 G 3 3
345 Armenia 13371 T 3 3
346 Armenia 13372 C 3 3
347 Armenia 13373 T 3 3
348 Armenia 13374 G 3 3
349 Armenia 13375 T 3 3
350 Armenia 13376 A 3 3
351 Armenia 13377 C 3 3
352 Armenia 13378 C 3 3
353 Armenia 13379 G 3 3
354 Armenia 13380 T 3 3
355 Armenia 13381 C 3 3
356 Armenia 13382 T 3 3
357 Armenia 13383 G 3 3
358 Armenia 13384 C 3 3
359 Armenia 13385 G 3 3
360 Armenia 13386 G 3 3
361 Armenia 13387 T 3 3
362 Armenia 13388 A 3 3
363 Armenia 13389 T 3 3
364 Armenia 13390 G 3 3
365 Armenia 13391 T 3 3
366 Armenia 13392 G 3 3
367 Armenia 13393 G 3 3
368 Armenia 13394 A 3 3
369 Armenia 13395 A 3 3
370 Armenia 13396 A 3 3
371 Armenia 13397 G 3 3
372 Armenia 13398 G 3 3
373 Armenia 13399 T 3 3
374 Armenia 13400 T 3 3
375 Armenia 13401 A 3 3
376 Armenia 13402 T 3 3
377 Armenia 13403 G 3 3
378 Armenia 13404 G 3 3
379 Armenia 13405 C 3 3
380 Armenia 13406 T 3 3
381 Armenia 13407 G 3 3
382 Armenia 13408 T 3 3
383 Armenia 13409 A 3 3
384 Armenia 13410 G 3 3
385 Armenia 13411 T 3 3
386 Armenia 13412 T 3 3
387 Armenia 13413 G 3 3
388 Armenia 13414 T 3 3
389 Armenia 13415 G 3 3
390 Armenia 13416 A 3 3
391 Armenia 13417 T 3 3
392 Armenia 13418 C 3 3
393 Armenia 13419 A 3 3
394 Armenia 13420 A 3 3
395 Armenia 13421 C 3 3
396 Armenia 13422 T 3 3
397 Armenia 13423 C 3 3
398 Armenia 13424 C 3 3
399 Armenia 13425 G 3 3
400 Armenia 13426 C 3 3
401 Armenia 13427 G 3 3
402 Armenia 13428 A 3 3
403 Armenia 13429 A 3 3
404 Armenia 13430 C 3 3
405 Armenia 13431 C 3 3
406 Armenia 13432 C 3 3
407 Armenia 13433 A 3 3
408 Armenia 13434 T 3 3
409 Armenia 13435 G 3 3
410 Armenia 13436 C 3 3
411 Armenia 13437 T 3 3
412 Armenia 13438 T 3 3
413 Armenia 13439 C 3 3
414 Armenia 13440 A 3 3
415 Armenia 13441 G 3 3