National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   416                                        
?                                            
A   38                                        
C   39                                        
D   21                                        
E   12                                        
F   15                                        
G   39                                        
H   9                                        
I   12                                        
K   24                                        
L   24                                        
M   12                                        
N   21                                        
P   24                                        
Q   18                                        
R   6                                        
S   18                                        
T   39                                        
V   27                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Andorra 13026 C 1 1
1 Andorra 13027 T 1 1
2 Andorra 13028 G 1 1
3 Andorra 13029 G 1 1
4 Andorra 13030 T 1 1
5 Andorra 13031 A 1 1
6 Andorra 13032 A 1 1
7 Andorra 13033 T 1 1
8 Andorra 13034 G 1 1
9 Andorra 13035 C 1 1
10 Andorra 13036 A 1 1
11 Andorra 13037 A 1 1
12 Andorra 13038 C 1 1
13 Andorra 13039 A 1 1
14 Andorra 13040 G 1 1
15 Andorra 13041 A 1 1
16 Andorra 13042 A 1 1
17 Andorra 13043 G 1 1
18 Andorra 13044 T 1 1
19 Andorra 13045 G 1 1
20 Andorra 13046 C 1 1
21 Andorra 13047 C 1 1
22 Andorra 13048 T 1 1
23 Andorra 13049 G 1 1
24 Andorra 13050 C 1 1
25 Andorra 13051 C 1 1
26 Andorra 13052 A 1 1
27 Andorra 13053 A 1 1
28 Andorra 13054 T 1 1
29 Andorra 13055 T 1 1
30 Andorra 13056 C 1 1
31 Andorra 13057 A 1 1
32 Andorra 13058 A 1 1
33 Andorra 13059 C 1 1
34 Andorra 13060 T 1 1
35 Andorra 13061 G 1 1
36 Andorra 13062 T 1 1
37 Andorra 13063 A 1 1
38 Andorra 13064 T 1 1
39 Andorra 13065 T 1 1
40 Andorra 13066 A 1 1
41 Andorra 13067 T 1 1
42 Andorra 13068 C 1 1
43 Andorra 13069 T 1 1
44 Andorra 13070 T 1 1
45 Andorra 13071 T 1 1
46 Andorra 13072 C 1 1
47 Andorra 13073 T 1 1
48 Andorra 13074 G 1 1
49 Andorra 13075 T 1 1
50 Andorra 13076 G 1 1
51 Andorra 13077 C 1 1
52 Andorra 13078 T 1 1
53 Andorra 13079 T 1 1
54 Andorra 13080 T 1 1
55 Andorra 13081 T 1 1
56 Andorra 13082 G 1 1
57 Andorra 13083 C 1 1
58 Andorra 13084 T 1 1
59 Andorra 13085 G 1 1
60 Andorra 13086 T 1 1
61 Andorra 13087 A 1 1
62 Andorra 13088 G 1 1
63 Andorra 13089 A 1 1
64 Andorra 13090 T 1 1
65 Andorra 13091 G 1 1
66 Andorra 13092 C 1 1
67 Andorra 13093 T 1 1
68 Andorra 13094 G 1 1
69 Andorra 13095 C 1 1
70 Andorra 13096 T 1 1
71 Andorra 13097 A 1 1
72 Andorra 13098 A 1 1
73 Andorra 13099 A 1 1
74 Andorra 13100 G 1 1
75 Andorra 13101 C 1 1
76 Andorra 13102 T 1 1
77 Andorra 13103 T 1 1
78 Andorra 13104 A 1 1
79 Andorra 13105 C 1 1
80 Andorra 13106 A 1 1
81 Andorra 13107 A 1 1
82 Andorra 13108 A 1 1
83 Andorra 13109 G 1 1
84 Andorra 13110 A 1 1
85 Andorra 13111 T 1 1
86 Andorra 13112 T 1 1
87 Andorra 13113 A 1 1
88 Andorra 13114 T 1 1
89 Andorra 13115 C 1 1
90 Andorra 13116 T 1 1
91 Andorra 13117 A 1 1
92 Andorra 13118 G 1 1
93 Andorra 13119 C 1 1
94 Andorra 13120 T 1 1
95 Andorra 13121 A 1 1
96 Andorra 13122 G 1 1
97 Andorra 13123 T 1 1
98 Andorra 13124 G 1 1
99 Andorra 13125 G 1 1
100 Andorra 13126 G 1 1
101 Andorra 13127 G 1 1
102 Andorra 13128 G 1 1
103 Andorra 13129 A 1 1
104 Andorra 13130 C 1 1
105 Andorra 13131 A 1 1
106 Andorra 13132 A 1 1
107 Andorra 13133 C 1 1
108 Andorra 13134 C 1 1
109 Andorra 13135 A 1 1
110 Andorra 13136 A 1 1
111 Andorra 13137 T 1 1
112 Andorra 13138 C 1 1
113 Andorra 13139 A 1 1
114 Andorra 13140 C 1 1
115 Andorra 13141 T 1 1
116 Andorra 13142 A 1 1
117 Andorra 13143 A 1 1
118 Andorra 13144 T 1 1
119 Andorra 13145 T 1 1
120 Andorra 13146 G 1 1
121 Andorra 13147 T 1 1
122 Andorra 13148 G 1 1
123 Andorra 13149 T 1 1
124 Andorra 13150 T 1 1
125 Andorra 13151 A 1 1
126 Andorra 13152 A 1 1
127 Andorra 13153 G 1 1
128 Andorra 13154 A 1 1
129 Andorra 13155 T 1 1
130 Andorra 13156 G 1 1
131 Andorra 13157 T 1 1
132 Andorra 13158 T 1 1
133 Andorra 13159 G 1 1
134 Andorra 13160 T 1 1
135 Andorra 13161 G 1 1
136 Andorra 13162 T 1 1
137 Andorra 13163 A 1 1
138 Andorra 13164 C 1 1
139 Andorra 13165 A 1 1
140 Andorra 13166 C 1 1
141 Andorra 13167 A 1 1
142 Andorra 13168 C 1 1
143 Andorra 13169 A 1 1
144 Andorra 13170 C 1 1
145 Andorra 13171 T 1 1
146 Andorra 13172 G 1 1
147 Andorra 13173 G 1 1
148 Andorra 13174 T 1 1
149 Andorra 13175 A 1 1
150 Andorra 13176 C 1 1
151 Andorra 13177 T 1 1
152 Andorra 13178 G 1 1
153 Andorra 13179 G 1 1
154 Andorra 13180 T 1 1
155 Andorra 13181 C 1 1
156 Andorra 13182 A 1 1
157 Andorra 13183 G 1 1
158 Andorra 13184 G 1 1
159 Andorra 13185 C 1 1
160 Andorra 13186 A 1 1
161 Andorra 13187 A 1 1
162 Andorra 13188 T 1 1
163 Andorra 13189 A 1 1
164 Andorra 13190 A 1 1
165 Andorra 13191 C 1 1
166 Andorra 13192 A 1 1
167 Andorra 13193 G 1 1
168 Andorra 13194 T 1 1
169 Andorra 13195 T 1 1
170 Andorra 13196 A 1 1
171 Andorra 13197 C 1 1
172 Andorra 13198 A 1 1
173 Andorra 13199 C 1 1
174 Andorra 13200 C 1 1
175 Andorra 13201 G 1 1
176 Andorra 13202 G 1 1
177 Andorra 13203 A 1 1
178 Andorra 13204 A 1 1
179 Andorra 13205 G 1 1
180 Andorra 13206 C 1 1
181 Andorra 13207 C 1 1
182 Andorra 13208 A 1 1
183 Andorra 13209 A 1 1
184 Andorra 13210 T 1 1
185 Andorra 13211 A 1 1
186 Andorra 13212 T 1 1
187 Andorra 13213 G 1 1
188 Andorra 13214 G 1 1
189 Andorra 13215 A 1 1
190 Andorra 13216 T 1 1
191 Andorra 13217 C 1 1
192 Andorra 13218 A 1 1
193 Andorra 13219 A 1 1
194 Andorra 13220 G 1 1
195 Andorra 13221 A 1 1
196 Andorra 13222 A 1 1
197 Andorra 13223 T 1 1
198 Andorra 13224 C 1 1
199 Andorra 13225 C 1 1
200 Andorra 13226 T 1 1
201 Andorra 13227 T 1 1
202 Andorra 13228 T 1 1
203 Andorra 13229 G 1 1
204 Andorra 13230 G 1 1
205 Andorra 13231 T 1 1
206 Andorra 13232 G 1 1
207 Andorra 13233 G 1 1
208 Andorra 13234 T 1 1
209 Andorra 13235 G 1 1
210 Andorra 13236 C 1 1
211 Andorra 13237 A 1 1
212 Andorra 13238 T 1 1
213 Andorra 13239 C 1 1
214 Andorra 13240 G 1 1
215 Andorra 13241 T 1 1
216 Andorra 13242 G 1 1
217 Andorra 13243 T 1 1
218 Andorra 13244 T 1 1
219 Andorra 13245 G 1 1
220 Andorra 13246 T 1 1
221 Andorra 13247 C 1 1
222 Andorra 13248 T 1 1
223 Andorra 13249 G 1 1
224 Andorra 13250 T 1 1
225 Andorra 13251 A 1 1
226 Andorra 13252 C 1 1
227 Andorra 13253 T 1 1
228 Andorra 13254 G 1 1
229 Andorra 13255 C 1 1
230 Andorra 13256 C 1 1
231 Andorra 13257 G 1 1
232 Andorra 13258 T 1 1
233 Andorra 13259 T 1 1
234 Andorra 13260 G 1 1
235 Andorra 13261 C 1 1
236 Andorra 13262 C 1 1
237 Andorra 13263 A 1 1
238 Andorra 13264 C 1 1
239 Andorra 13265 A 1 1
240 Andorra 13266 T 1 1
241 Andorra 13267 A 1 1
242 Andorra 13268 G 1 1
243 Andorra 13269 A 1 1
244 Andorra 13270 T 1 1
245 Andorra 13271 C 1 1
246 Andorra 13272 A 1 1
247 Andorra 13273 T 1 1
248 Andorra 13274 C 1 1
249 Andorra 13275 C 1 1
250 Andorra 13276 A 1 1
251 Andorra 13277 A 1 1
252 Andorra 13278 A 1 1
253 Andorra 13279 T 1 1
254 Andorra 13280 C 1 1
255 Andorra 13281 C 1 1
256 Andorra 13282 T 1 1
257 Andorra 13283 A 1 1
258 Andorra 13284 A 1 1
259 Andorra 13285 A 1 1
260 Andorra 13286 G 1 1
261 Andorra 13287 G 1 1
262 Andorra 13288 A 1 1
263 Andorra 13289 T 1 1
264 Andorra 13290 T 1 1
265 Andorra 13291 T 1 1
266 Andorra 13292 T 1 1
267 Andorra 13293 G 1 1
268 Andorra 13294 T 1 1
269 Andorra 13295 G 1 1
270 Andorra 13296 A 1 1
271 Andorra 13297 C 1 1
272 Andorra 13298 T 1 1
273 Andorra 13299 T 1 1
274 Andorra 13300 A 1 1
275 Andorra 13301 A 1 1
276 Andorra 13302 A 1 1
277 Andorra 13303 A 1 1
278 Andorra 13304 G 1 1
279 Andorra 13305 G 1 1
280 Andorra 13306 T 1 1
281 Andorra 13307 A 1 1
282 Andorra 13308 A 1 1
283 Andorra 13309 G 1 1
284 Andorra 13310 T 1 1
285 Andorra 13311 A 1 1
286 Andorra 13312 T 1 1
287 Andorra 13313 G 1 1
288 Andorra 13314 T 1 1
289 Andorra 13315 A 1 1
290 Andorra 13316 C 1 1
291 Andorra 13317 A 1 1
292 Andorra 13318 A 1 1
293 Andorra 13319 A 1 1
294 Andorra 13320 T 1 1
295 Andorra 13321 A 1 1
296 Andorra 13322 C 1 1
297 Andorra 13323 C 1 1
298 Andorra 13324 T 1 1
299 Andorra 13325 A 1 1
300 Andorra 13326 C 1 1
301 Andorra 13327 A 1 1
302 Andorra 13328 A 1 1
303 Andorra 13329 C 1 1
304 Andorra 13330 T 1 1
305 Andorra 13331 T 1 1
306 Andorra 13332 G 1 1
307 Andorra 13333 T 1 1
308 Andorra 13334 G 1 1
309 Andorra 13335 C 1 1
310 Andorra 13336 T 1 1
311 Andorra 13337 A 1 1
312 Andorra 13338 A 1 1
313 Andorra 13339 T 1 1
314 Andorra 13340 G 1 1
315 Andorra 13341 A 1 1
316 Andorra 13342 C 1 1
317 Andorra 13343 C 1 1
318 Andorra 13344 C 1 1
319 Andorra 13345 T 1 1
320 Andorra 13346 G 1 1
321 Andorra 13347 T 1 1
322 Andorra 13348 G 1 1
323 Andorra 13349 G 1 1
324 Andorra 13350 G 1 1
325 Andorra 13351 T 1 1
326 Andorra 13352 T 1 1
327 Andorra 13353 T 1 1
328 Andorra 13354 T 1 1
329 Andorra 13355 A 1 1
330 Andorra 13356 C 1 1
331 Andorra 13357 A 1 1
332 Andorra 13358 C 1 1
333 Andorra 13359 T 1 1
334 Andorra 13360 T 1 1
335 Andorra 13361 A 1 1
336 Andorra 13362 A 1 1
337 Andorra 13363 A 1 1
338 Andorra 13364 A 1 1
339 Andorra 13365 A 1 1
340 Andorra 13366 C 1 1
341 Andorra 13367 A 1 1
342 Andorra 13368 C 1 1
343 Andorra 13369 A 1 1
344 Andorra 13370 G 1 1
345 Andorra 13371 T 1 1
346 Andorra 13372 C 1 1
347 Andorra 13373 T 1 1
348 Andorra 13374 G 1 1
349 Andorra 13375 T 1 1
350 Andorra 13376 A 1 1
351 Andorra 13377 C 1 1
352 Andorra 13378 C 1 1
353 Andorra 13379 G 1 1
354 Andorra 13380 T 1 1
355 Andorra 13381 C 1 1
356 Andorra 13382 T 1 1
357 Andorra 13383 G 1 1
358 Andorra 13384 C 1 1
359 Andorra 13385 G 1 1
360 Andorra 13386 G 1 1
361 Andorra 13387 T 1 1
362 Andorra 13388 A 1 1
363 Andorra 13389 T 1 1
364 Andorra 13390 G 1 1
365 Andorra 13391 T 1 1
366 Andorra 13392 G 1 1
367 Andorra 13393 G 1 1
368 Andorra 13394 A 1 1
369 Andorra 13395 A 1 1
370 Andorra 13396 A 1 1
371 Andorra 13397 G 1 1
372 Andorra 13398 G 1 1
373 Andorra 13399 T 1 1
374 Andorra 13400 T 1 1
375 Andorra 13401 A 1 1
376 Andorra 13402 T 1 1
377 Andorra 13403 G 1 1
378 Andorra 13404 G 1 1
379 Andorra 13405 C 1 1
380 Andorra 13406 T 1 1
381 Andorra 13407 G 1 1
382 Andorra 13408 T 1 1
383 Andorra 13409 A 1 1
384 Andorra 13410 G 1 1
385 Andorra 13411 T 1 1
386 Andorra 13412 T 1 1
387 Andorra 13413 G 1 1
388 Andorra 13414 T 1 1
389 Andorra 13415 G 1 1
390 Andorra 13416 A 1 1
391 Andorra 13417 T 1 1
392 Andorra 13418 C 1 1
393 Andorra 13419 A 1 1
394 Andorra 13420 A 1 1
395 Andorra 13421 C 1 1
396 Andorra 13422 T 1 1
397 Andorra 13423 C 1 1
398 Andorra 13424 C 1 1
399 Andorra 13425 G 1 1
400 Andorra 13426 C 1 1
401 Andorra 13427 G 1 1
402 Andorra 13428 A 1 1
403 Andorra 13429 A 1 1
404 Andorra 13430 C 1 1
405 Andorra 13431 C 1 1
406 Andorra 13432 C 1 1
407 Andorra 13433 A 1 1
408 Andorra 13434 T 1 1
409 Andorra 13435 G 1 1
410 Andorra 13436 C 1 1
411 Andorra 13437 T 1 1
412 Andorra 13438 T 1 1
413 Andorra 13439 C 1 1
414 Andorra 13440 A 1 1
415 Andorra 13441 G 1 1