National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                        
C   3                                        
D   27                                        
E   54                                        
F   15                                        
G   66                                        
H   21                                        
I   9                                        
K   27                                        
L   63                                        
M   9                                        
N   18                                        
P   24                                        
Q   21                                        
R   30                                        
S   30                                        
T   21                                        
V   63                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Zambia 266 A 2 2
1 Zambia 267 T 2 2
2 Zambia 268 G 2 2
3 Zambia 269 G 2 2
4 Zambia 270 A 2 2
5 Zambia 271 G 2 2
6 Zambia 272 A 2 2
7 Zambia 273 G 2 2
8 Zambia 274 C 2 2
9 Zambia 275 C 2 2
10 Zambia 276 T 2 2
11 Zambia 277 T 2 2
12 Zambia 278 G 2 2
13 Zambia 279 T 2 2
14 Zambia 280 C 2 2
15 Zambia 281 C 2 2
16 Zambia 282 C 2 2
17 Zambia 283 T 2 2
18 Zambia 284 G 2 2
19 Zambia 285 G 2 2
20 Zambia 286 T 2 2
21 Zambia 287 T 2 2
22 Zambia 288 T 2 2
23 Zambia 289 C 2 2
24 Zambia 290 A 2 2
25 Zambia 291 A 2 2
26 Zambia 292 C 2 2
27 Zambia 293 G 2 2
28 Zambia 294 A 2 2
29 Zambia 295 G 2 2
30 Zambia 296 A 2 2
31 Zambia 297 A 2 2
32 Zambia 298 A 2 2
33 Zambia 299 A 2 2
34 Zambia 300 C 2 2
35 Zambia 301 A 2 2
36 Zambia 302 C 2 2
37 Zambia 303 A 2 2
38 Zambia 304 C 2 2
39 Zambia 305 G 2 2
40 Zambia 306 T 2 2
41 Zambia 307 C 2 2
42 Zambia 308 C 2 2
43 Zambia 309 A 2 2
44 Zambia 310 A 2 2
45 Zambia 311 C 2 2
46 Zambia 312 T 2 2
47 Zambia 313 C 2 2
48 Zambia 314 A 2 2
49 Zambia 315 G 2 2
50 Zambia 316 T 2 2
51 Zambia 317 T 2 2
52 Zambia 318 T 2 2
53 Zambia 319 G 2 2
54 Zambia 320 C 2 2
55 Zambia 321 C 2 2
56 Zambia 322 T 2 2
57 Zambia 323 G 2 2
58 Zambia 324 T 2 2
59 Zambia 325 T 2 2
60 Zambia 326 T 2 2
61 Zambia 327 T 2 2
62 Zambia 328 A 2 2
63 Zambia 329 C 2 2
64 Zambia 330 A 2 2
65 Zambia 331 G 2 2
66 Zambia 332 G 2 2
67 Zambia 333 T 2 2
68 Zambia 334 T 2 2
69 Zambia 335 C 2 2
70 Zambia 336 G 2 2
71 Zambia 337 C 2 2
72 Zambia 338 G 2 2
73 Zambia 339 A 2 2
74 Zambia 340 C 2 2
75 Zambia 341 G 2 2
76 Zambia 342 T 2 2
77 Zambia 343 G 2 2
78 Zambia 344 C 2 2
79 Zambia 345 T 2 2
80 Zambia 346 C 2 2
81 Zambia 347 G 2 2
82 Zambia 348 T 2 2
83 Zambia 349 A 2 2
84 Zambia 350 C 2 2
85 Zambia 351 G 2 2
86 Zambia 352 T 2 2
87 Zambia 353 G 2 2
88 Zambia 354 G 2 2
89 Zambia 355 C 2 2
90 Zambia 356 T 2 2
91 Zambia 357 T 2 2
92 Zambia 358 T 2 2
93 Zambia 359 G 2 2
94 Zambia 360 G 2 2
95 Zambia 361 A 2 2
96 Zambia 362 G 2 2
97 Zambia 363 A 2 2
98 Zambia 364 C 2 2
99 Zambia 365 T 2 2
100 Zambia 366 C 2 2
101 Zambia 367 C 2 2
102 Zambia 368 G 2 2
103 Zambia 369 T 2 2
104 Zambia 370 G 2 2
105 Zambia 371 G 2 2
106 Zambia 372 A 2 2
107 Zambia 373 G 2 2
108 Zambia 374 G 2 2
109 Zambia 375 A 2 2
110 Zambia 376 G 2 2
111 Zambia 377 G 2 2
112 Zambia 378 T 2 2
113 Zambia 379 C 2 2
114 Zambia 380 T 2 2
115 Zambia 381 T 2 2
116 Zambia 382 A 2 2
117 Zambia 383 T 2 2
118 Zambia 384 C 2 2
119 Zambia 385 A 2 2
120 Zambia 386 G 2 2
121 Zambia 387 A 2 2
122 Zambia 388 G 2 2
123 Zambia 389 G 2 2
124 Zambia 390 C 2 2
125 Zambia 391 A 2 2
126 Zambia 392 C 2 2
127 Zambia 393 G 2 2
128 Zambia 394 T 2 2
129 Zambia 395 C 2 2
130 Zambia 396 A 2 2
131 Zambia 397 A 2 2
132 Zambia 398 C 2 2
133 Zambia 399 A 2 2
134 Zambia 400 T 2 2
135 Zambia 401 C 2 2
136 Zambia 402 T 2 2
137 Zambia 403 T 2 2
138 Zambia 404 A 2 2
139 Zambia 405 A 2 2
140 Zambia 406 A 2 2
141 Zambia 407 G 2 2
142 Zambia 408 A 2 2
143 Zambia 409 T 2 2
144 Zambia 410 G 2 2
145 Zambia 411 G 2 2
146 Zambia 412 C 2 2
147 Zambia 413 A 2 2
148 Zambia 414 C 2 2
149 Zambia 415 T 2 2
150 Zambia 416 T 2 2
151 Zambia 417 G 2 2
152 Zambia 418 T 2 2
153 Zambia 419 G 2 2
154 Zambia 420 G 2 2
155 Zambia 421 C 2 2
156 Zambia 422 T 2 2
157 Zambia 423 T 2 2
158 Zambia 424 A 2 2
159 Zambia 425 G 2 2
160 Zambia 426 T 2 2
161 Zambia 427 A 2 2
162 Zambia 428 G 2 2
163 Zambia 429 A 2 2
164 Zambia 430 A 2 2
165 Zambia 431 G 2 2
166 Zambia 432 T 2 2
167 Zambia 433 T 2 2
168 Zambia 434 G 2 2
169 Zambia 435 A 2 2
170 Zambia 436 A 2 2
171 Zambia 437 A 2 2
172 Zambia 438 A 2 2
173 Zambia 439 A 2 2
174 Zambia 440 G 2 2
175 Zambia 441 G 2 2
176 Zambia 442 C 2 2
177 Zambia 443 G 2 2
178 Zambia 444 T 2 2
179 Zambia 445 T 2 2
180 Zambia 446 T 2 2
181 Zambia 447 T 2 2
182 Zambia 448 G 2 2
183 Zambia 449 C 2 2
184 Zambia 450 C 2 2
185 Zambia 451 T 2 2
186 Zambia 452 C 2 2
187 Zambia 453 A 2 2
188 Zambia 454 A 2 2
189 Zambia 455 C 2 2
190 Zambia 456 T 2 2
191 Zambia 457 T 2 2
192 Zambia 458 G 2 2
193 Zambia 459 A 2 2
194 Zambia 460 A 2 2
195 Zambia 461 C 2 2
196 Zambia 462 A 2 2
197 Zambia 463 G 2 2
198 Zambia 464 C 2 2
199 Zambia 465 C 2 2
200 Zambia 466 C 2 2
201 Zambia 467 T 2 2
202 Zambia 468 A 2 2
203 Zambia 469 T 2 2
204 Zambia 470 G 2 2
205 Zambia 471 T 2 2
206 Zambia 472 G 2 2
207 Zambia 473 T 2 2
208 Zambia 474 T 2 2
209 Zambia 475 C 2 2
210 Zambia 476 A 2 2
211 Zambia 477 T 2 2
212 Zambia 478 C 2 2
213 Zambia 479 A 2 2
214 Zambia 480 A 2 2
215 Zambia 481 A 2 2
216 Zambia 482 C 2 2
217 Zambia 483 G 2 2
218 Zambia 484 T 2 2
219 Zambia 485 T 2 2
220 Zambia 486 C 2 2
221 Zambia 487 G 2 2
222 Zambia 488 G 2 2
223 Zambia 489 A 2 2
224 Zambia 490 T 2 2
225 Zambia 491 G 2 2
226 Zambia 492 C 2 2
227 Zambia 493 T 2 2
228 Zambia 494 C 2 2
229 Zambia 495 G 2 2
230 Zambia 496 A 2 2
231 Zambia 497 A 2 2
232 Zambia 498 C 2 2
233 Zambia 499 T 2 2
234 Zambia 500 G 2 2
235 Zambia 501 C 2 2
236 Zambia 502 A 2 2
237 Zambia 503 C 2 2
238 Zambia 504 C 2 2
239 Zambia 505 T 2 2
240 Zambia 506 C 2 2
241 Zambia 507 A 2 2
242 Zambia 508 T 2 2
243 Zambia 509 G 2 2
244 Zambia 510 G 2 2
245 Zambia 511 T 2 2
246 Zambia 512 C 2 2
247 Zambia 513 A 2 2
248 Zambia 514 T 2 2
249 Zambia 515 G 2 2
250 Zambia 516 T 2 2
251 Zambia 517 T 2 2
252 Zambia 518 A 2 2
253 Zambia 519 T 2 2
254 Zambia 520 G 2 2
255 Zambia 521 G 2 2
256 Zambia 522 T 2 2
257 Zambia 523 T 2 2
258 Zambia 524 G 2 2
259 Zambia 525 A 2 2
260 Zambia 526 G 2 2
261 Zambia 527 C 2 2
262 Zambia 528 T 2 2
263 Zambia 529 G 2 2
264 Zambia 530 G 2 2
265 Zambia 531 T 2 2
266 Zambia 532 A 2 2
267 Zambia 533 G 2 2
268 Zambia 534 C 2 2
269 Zambia 535 A 2 2
270 Zambia 536 G 2 2
271 Zambia 537 A 2 2
272 Zambia 538 A 2 2
273 Zambia 539 C 2 2
274 Zambia 540 T 2 2
275 Zambia 541 C 2 2
276 Zambia 542 G 2 2
277 Zambia 543 A 2 2
278 Zambia 544 A 2 2
279 Zambia 545 G 2 2
280 Zambia 546 G 2 2
281 Zambia 547 C 2 2
282 Zambia 548 A 2 2
283 Zambia 549 T 2 2
284 Zambia 550 T 2 2
285 Zambia 551 C 2 2
286 Zambia 552 A 2 2
287 Zambia 553 G 2 2
288 Zambia 554 T 2 2
289 Zambia 555 A 2 2
290 Zambia 556 C 2 2
291 Zambia 557 G 2 2
292 Zambia 558 G 2 2
293 Zambia 559 T 2 2
294 Zambia 560 C 2 2
295 Zambia 561 G 2 2
296 Zambia 562 T 2 2
297 Zambia 563 A 2 2
298 Zambia 564 G 2 2
299 Zambia 565 T 2 2
300 Zambia 566 G 2 2
301 Zambia 567 G 2 2
302 Zambia 568 T 2 2
303 Zambia 569 G 2 2
304 Zambia 570 A 2 2
305 Zambia 571 G 2 2
306 Zambia 572 A 2 2
307 Zambia 573 C 2 2
308 Zambia 574 A 2 2
309 Zambia 575 C 2 2
310 Zambia 576 T 2 2
311 Zambia 577 T 2 2
312 Zambia 578 G 2 2
313 Zambia 579 G 2 2
314 Zambia 580 T 2 2
315 Zambia 581 G 2 2
316 Zambia 582 T 2 2
317 Zambia 583 C 2 2
318 Zambia 584 C 2 2
319 Zambia 585 T 2 2
320 Zambia 586 T 2 2
321 Zambia 587 G 2 2
322 Zambia 588 T 2 2
323 Zambia 589 C 2 2
324 Zambia 590 C 2 2
325 Zambia 591 C 2 2
326 Zambia 592 T 2 2
327 Zambia 593 C 2 2
328 Zambia 594 A 2 2
329 Zambia 595 T 2 2
330 Zambia 596 G 2 2
331 Zambia 597 T 2 2
332 Zambia 598 G 2 2
333 Zambia 599 G 2 2
334 Zambia 600 G 2 2
335 Zambia 601 C 2 2
336 Zambia 602 G 2 2
337 Zambia 603 A 2 2
338 Zambia 604 A 2 2
339 Zambia 605 A 2 2
340 Zambia 606 T 2 2
341 Zambia 607 A 2 2
342 Zambia 608 C 2 2
343 Zambia 609 C 2 2
344 Zambia 610 A 2 2
345 Zambia 611 G 2 2
346 Zambia 612 T 2 2
347 Zambia 613 G 2 2
348 Zambia 614 G 2 2
349 Zambia 615 C 2 2
350 Zambia 616 T 2 2
351 Zambia 617 T 2 2
352 Zambia 618 A 2 2
353 Zambia 619 C 2 2
354 Zambia 620 C 2 2
355 Zambia 621 G 2 2
356 Zambia 622 C 2 2
357 Zambia 623 A 2 2
358 Zambia 624 A 2 2
359 Zambia 625 G 2 2
360 Zambia 626 G 2 2
361 Zambia 627 T 2 2
362 Zambia 628 T 2 2
363 Zambia 629 C 2 2
364 Zambia 630 T 2 2
365 Zambia 631 T 2 2
366 Zambia 632 C 2 2
367 Zambia 633 T 2 2
368 Zambia 634 T 2 2
369 Zambia 635 C 2 2
370 Zambia 636 G 2 2
371 Zambia 637 T 2 2
372 Zambia 638 A 2 2
373 Zambia 639 A 2 2
374 Zambia 640 G 2 2
375 Zambia 641 A 2 2
376 Zambia 642 A 2 2
377 Zambia 643 C 2 2
378 Zambia 644 G 2 2
379 Zambia 645 G 2 2
380 Zambia 646 T 2 2
381 Zambia 647 A 2 2
382 Zambia 648 A 2 2
383 Zambia 649 T 2 2
384 Zambia 650 A 2 2
385 Zambia 651 A 2 2
386 Zambia 652 A 2 2
387 Zambia 653 G 2 2
388 Zambia 654 G 2 2
389 Zambia 655 A 2 2
390 Zambia 656 G 2 2
391 Zambia 657 C 2 2
392 Zambia 658 T 2 2
393 Zambia 659 G 2 2
394 Zambia 660 G 2 2
395 Zambia 661 T 2 2
396 Zambia 662 G 2 2
397 Zambia 663 G 2 2
398 Zambia 664 C 2 2
399 Zambia 665 C 2 2
400 Zambia 666 A 2 2
401 Zambia 667 T 2 2
402 Zambia 668 A 2 2
403 Zambia 669 G 2 2
404 Zambia 670 T 2 2
405 Zambia 671 T 2 2
406 Zambia 672 A 2 2
407 Zambia 673 C 2 2
408 Zambia 674 G 2 2
409 Zambia 675 G 2 2
410 Zambia 676 C 2 2
411 Zambia 677 G 2 2
412 Zambia 678 C 2 2
413 Zambia 679 C 2 2
414 Zambia 680 G 2 2
415 Zambia 681 A 2 2
416 Zambia 682 T 2 2
417 Zambia 683 C 2 2
418 Zambia 684 T 2 2
419 Zambia 685 A 2 2
420 Zambia 686 A 2 2
421 Zambia 687 A 2 2
422 Zambia 688 G 2 2
423 Zambia 689 T 2 2
424 Zambia 690 C 2 2
425 Zambia 691 A 2 2
426 Zambia 692 T 2 2
427 Zambia 693 T 2 2
428 Zambia 694 T 2 2
429 Zambia 695 G 2 2
430 Zambia 696 A 2 2
431 Zambia 697 C 2 2
432 Zambia 698 T 2 2
433 Zambia 699 T 2 2
434 Zambia 700 A 2 2
435 Zambia 701 G 2 2
436 Zambia 702 G 2 2
437 Zambia 703 C 2 2
438 Zambia 704 G 2 2
439 Zambia 705 A 2 2
440 Zambia 706 C 2 2
441 Zambia 707 G 2 2
442 Zambia 708 A 2 2
443 Zambia 709 G 2 2
444 Zambia 710 C 2 2
445 Zambia 711 T 2 2
446 Zambia 712 T 2 2
447 Zambia 713 G 2 2
448 Zambia 714 G 2 2
449 Zambia 715 C 2 2
450 Zambia 716 A 2 2
451 Zambia 717 C 2 2
452 Zambia 718 T 2 2
453 Zambia 719 G 2 2
454 Zambia 720 A 2 2
455 Zambia 721 T 2 2
456 Zambia 722 C 2 2
457 Zambia 723 C 2 2
458 Zambia 724 T 2 2
459 Zambia 725 T 2 2
460 Zambia 726 A 2 2
461 Zambia 727 T 2 2
462 Zambia 728 G 2 2
463 Zambia 729 A 2 2
464 Zambia 730 A 2 2
465 Zambia 731 G 2 2
466 Zambia 732 A 2 2
467 Zambia 733 T 2 2
468 Zambia 734 T 2 2
469 Zambia 735 T 2 2
470 Zambia 736 T 2 2
471 Zambia 737 C 2 2
472 Zambia 738 A 2 2
473 Zambia 739 A 2 2
474 Zambia 740 G 2 2
475 Zambia 741 A 2 2
476 Zambia 742 A 2 2
477 Zambia 743 A 2 2
478 Zambia 744 A 2 2
479 Zambia 745 C 2 2
480 Zambia 746 T 2 2
481 Zambia 747 G 2 2
482 Zambia 748 G 2 2
483 Zambia 749 A 2 2
484 Zambia 750 A 2 2
485 Zambia 751 C 2 2
486 Zambia 752 A 2 2
487 Zambia 753 C 2 2
488 Zambia 754 T 2 2
489 Zambia 755 A 2 2
490 Zambia 756 A 2 2
491 Zambia 757 A 2 2
492 Zambia 758 C 2 2
493 Zambia 759 A 2 2
494 Zambia 760 T 2 2
495 Zambia 761 A 2 2
496 Zambia 762 G 2 2
497 Zambia 763 C 2 2
498 Zambia 764 A 2 2
499 Zambia 765 G 2 2
500 Zambia 766 T 2 2
501 Zambia 767 G 2 2
502 Zambia 768 G 2 2
503 Zambia 769 T 2 2
504 Zambia 770 G 2 2
505 Zambia 771 T 2 2
506 Zambia 772 T 2 2
507 Zambia 773 A 2 2
508 Zambia 774 C 2 2
509 Zambia 775 C 2 2
510 Zambia 776 C 2 2
511 Zambia 777 G 2 2
512 Zambia 778 T 2 2
513 Zambia 779 G 2 2
514 Zambia 780 A 2 2
515 Zambia 781 A 2 2
516 Zambia 782 C 2 2
517 Zambia 783 T 2 2
518 Zambia 784 C 2 2
519 Zambia 785 A 2 2
520 Zambia 786 T 2 2
521 Zambia 787 G 2 2
522 Zambia 788 C 2 2
523 Zambia 789 G 2 2
524 Zambia 790 T 2 2
525 Zambia 791 G 2 2
526 Zambia 792 A 2 2
527 Zambia 793 G 2 2
528 Zambia 794 C 2 2
529 Zambia 795 T 2 2
530 Zambia 796 T 2 2
531 Zambia 797 A 2 2
532 Zambia 798 A 2 2
533 Zambia 799 C 2 2
534 Zambia 800 G 2 2
535 Zambia 801 G 2 2
536 Zambia 802 A 2 2
537 Zambia 803 G 2 2
538 Zambia 804 G 2 2
539 Zambia 805 G 2 2