National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                 1      
C   3                                        
D   27     1                                  
E   54     1 1                   1            
F   15         1                              
G   66   1       3                            
H   21                                        
I   9                                 1      
K   27                 1     1                
L   63         1         3     2              
M   9                                        
N   18                                        
P   24                               1        
Q   21                                        
R   30   1         1               1 1        
S   30                               1 1      
T   21                                        
V   63         1     1                   1    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Turkey 266 A 489 489
1 Turkey 267 T 489 489
2 Turkey 268 G 489 489
3 Turkey 269 G 489 489
4 Turkey 270 A 489 489
5 Turkey 271 G 489 489
6 Turkey 272 A 489 489
7 Turkey 273 G 489 489
8 Turkey 274 C T 489 488 Ser3Ser
9 Turkey 275 C 489 489
10 Turkey 276 T 489 489
11 Turkey 277 T 489 489
12 Turkey 278 G 489 489
13 Turkey 279 T 489 489
14 Turkey 280 C 489 489
15 Turkey 281 C 489 489
16 Turkey 282 C 489 489
17 Turkey 283 T 489 489
18 Turkey 284 G 489 489
19 Turkey 285 G 489 489
20 Turkey 286 T C 489 488 Gly7Gly
21 Turkey 287 T 489 489
22 Turkey 288 T 489 489
23 Turkey 289 C 489 489
24 Turkey 290 A 489 489
25 Turkey 291 A 489 489
26 Turkey 292 C 489 489
27 Turkey 293 G 489 489
28 Turkey 294 A 489 489
29 Turkey 295 G 489 489
30 Turkey 296 A 489 489
31 Turkey 297 A 489 489
32 Turkey 298 A 489 489
33 Turkey 299 A 489 489
34 Turkey 300 C 489 489
35 Turkey 301 A 489 489
36 Turkey 302 C 489 489
37 Turkey 303 A 489 489
38 Turkey 304 C 489 489
39 Turkey 305 G 489 489
40 Turkey 306 T 489 489
41 Turkey 307 C 489 489
42 Turkey 308 C 489 489
43 Turkey 309 A 489 489
44 Turkey 310 A 489 488
45 Turkey 311 C 489 488
46 Turkey 312 T 489 488
47 Turkey 313 C T 489 444 Leu16Leu
48 Turkey 314 A 489 488
49 Turkey 315 G 489 488
50 Turkey 316 T 489 488
51 Turkey 317 T 489 488
52 Turkey 318 T 489 488
53 Turkey 319 G 489 488
54 Turkey 320 C 489 488
55 Turkey 321 C 489 488
56 Turkey 322 T 489 488
57 Turkey 323 G 489 488
58 Turkey 324 T 489 488
59 Turkey 325 T 489 488
60 Turkey 326 T 489 488
61 Turkey 327 T 489 488
62 Turkey 328 A 489 488
63 Turkey 329 C 489 488
64 Turkey 330 A 489 488
65 Turkey 331 G 489 488
66 Turkey 332 G 489 488
67 Turkey 333 T 489 488
68 Turkey 334 T 489 488
69 Turkey 335 C T 489 486 Arg24Cys
70 Turkey 336 G 489 489
71 Turkey 337 C 489 489
72 Turkey 338 G 489 489
73 Turkey 339 A 489 489
74 Turkey 340 C 489 489
75 Turkey 341 G 489 489
76 Turkey 342 T 489 489
77 Turkey 343 G 489 489
78 Turkey 344 C T 489 488 Leu27Phe
79 Turkey 345 T 489 489
80 Turkey 346 C T 489 488 Leu27Leu
81 Turkey 347 G A 489 488 Val28Ile
82 Turkey 348 T 489 489
83 Turkey 349 A 489 489
84 Turkey 350 C 489 489
85 Turkey 351 G 489 489
86 Turkey 352 T 490 490
87 Turkey 353 G 490 490
88 Turkey 354 G 490 490
89 Turkey 355 C 490 490
90 Turkey 356 T 490 490
91 Turkey 357 T 490 490
92 Turkey 358 T 490 490
93 Turkey 359 G 490 490
94 Turkey 360 G 490 490
95 Turkey 361 A 490 490
96 Turkey 362 G 490 490
97 Turkey 363 A 490 490
98 Turkey 364 C 490 490
99 Turkey 365 T A 490 489 Ser34Thr
100 Turkey 366 C 490 490
101 Turkey 367 C 490 490
102 Turkey 368 G 490 490
103 Turkey 369 T 490 490
104 Turkey 370 G 490 490
105 Turkey 371 G 490 490
106 Turkey 372 A 490 490
107 Turkey 373 G 490 490
108 Turkey 374 G 490 490
109 Turkey 375 A 490 490
110 Turkey 376 G T 490 489 Glu37Asp
111 Turkey 377 G 490 490
112 Turkey 378 T 490 490
113 Turkey 379 C 490 490
114 Turkey 380 T 490 490
115 Turkey 381 T 490 490
116 Turkey 382 A 490 490
117 Turkey 383 T 490 490
118 Turkey 384 C 490 490
119 Turkey 385 A 490 490
120 Turkey 386 G 490 490
121 Turkey 387 A 490 490
122 Turkey 388 G 490 490
123 Turkey 389 G 490 490
124 Turkey 390 C 490 490
125 Turkey 391 A 490 490
126 Turkey 392 C 490 490
127 Turkey 393 G 490 490
128 Turkey 394 T 490 490
129 Turkey 395 C 490 490
130 Turkey 396 A 490 490
131 Turkey 397 A 490 490
132 Turkey 398 C 490 490
133 Turkey 399 A 490 490
134 Turkey 400 T 490 490
135 Turkey 401 C 490 490
136 Turkey 402 T 490 490
137 Turkey 403 T 490 490
138 Turkey 404 A 490 490
139 Turkey 405 A 490 490
140 Turkey 406 A 490 489
141 Turkey 407 G 490 489
142 Turkey 408 A 490 489
143 Turkey 409 T 490 489
144 Turkey 410 G 490 489
145 Turkey 411 G 490 490
146 Turkey 412 C 490 490
147 Turkey 413 A 490 490
148 Turkey 414 C 490 490
149 Turkey 415 T 490 490
150 Turkey 416 T 490 490
151 Turkey 417 G 490 490
152 Turkey 418 T 490 490
153 Turkey 419 G 490 490
154 Turkey 420 G 490 490
155 Turkey 421 C 490 490
156 Turkey 422 T 490 490
157 Turkey 423 T 490 490
158 Turkey 424 A 490 490
159 Turkey 425 G 490 490
160 Turkey 426 T 490 490
161 Turkey 427 A 490 490
162 Turkey 428 G 490 490
163 Turkey 429 A 490 490
164 Turkey 430 A 490 490
165 Turkey 431 G 490 490
166 Turkey 432 T 490 490
167 Turkey 433 T 490 490
168 Turkey 434 G 490 490
169 Turkey 435 A 490 490
170 Turkey 436 A 490 490
171 Turkey 437 A 490 490
172 Turkey 438 A 490 490
173 Turkey 439 A T 490 489 Lys58Asn
174 Turkey 440 G T 490 489 Gly59Cys
175 Turkey 441 G 490 490
176 Turkey 442 C 490 490
177 Turkey 443 G 490 490
178 Turkey 444 T 490 490
179 Turkey 445 T C 490 487 Val60Val
180 Turkey 446 T 490 490
181 Turkey 447 T 490 490
182 Turkey 448 G 490 490
183 Turkey 449 C 490 490
184 Turkey 450 C 490 490
185 Turkey 451 T 490 490
186 Turkey 452 C 490 490
187 Turkey 453 A 490 490
188 Turkey 454 A 490 490
189 Turkey 455 C 490 490
190 Turkey 456 T 490 490
191 Turkey 457 T 490 490
192 Turkey 458 G 490 490
193 Turkey 459 A 490 490
194 Turkey 460 A 490 490
195 Turkey 461 C 490 490
196 Turkey 462 A 490 490
197 Turkey 463 G 490 490
198 Turkey 464 C 490 490
199 Turkey 465 C 490 490
200 Turkey 466 C 490 490
201 Turkey 467 T 490 490
202 Turkey 468 A 490 490
203 Turkey 469 T 490 490
204 Turkey 470 G 490 490
205 Turkey 471 T 490 490
206 Turkey 472 G 490 490
207 Turkey 473 T 490 490
208 Turkey 474 T 490 490
209 Turkey 475 C T 490 489 Phe70Phe
210 Turkey 476 A 490 490
211 Turkey 477 T 490 490
212 Turkey 478 C 490 490
213 Turkey 479 A 490 490
214 Turkey 480 A 490 490
215 Turkey 481 A G 490 489 Lys72Lys
216 Turkey 482 C 490 490
217 Turkey 483 G 490 490
218 Turkey 484 T 490 490
219 Turkey 485 T 490 490
220 Turkey 486 C 490 490
221 Turkey 487 G 490 490
222 Turkey 488 G 490 490
223 Turkey 489 A 490 490
224 Turkey 490 T 490 490
225 Turkey 491 G 490 490
226 Turkey 492 C 490 490
227 Turkey 493 T 490 490
228 Turkey 494 C 490 490
229 Turkey 495 G 490 490
230 Turkey 496 A 490 490
231 Turkey 497 A 490 490
232 Turkey 498 C 490 490
233 Turkey 499 T 490 490
234 Turkey 500 G 490 490
235 Turkey 501 C 490 490
236 Turkey 502 A 490 490
237 Turkey 503 C T 490 489 Pro80Ser
238 Turkey 504 C 490 490
239 Turkey 505 T 487 487
240 Turkey 506 C 487 487
241 Turkey 507 A 487 487
242 Turkey 508 T 487 487
243 Turkey 509 G 487 487
244 Turkey 510 G 487 487
245 Turkey 511 T 487 487
246 Turkey 512 C 487 487
247 Turkey 513 A 487 487
248 Turkey 514 T 487 487
249 Turkey 515 G 487 487
250 Turkey 516 T 487 487
251 Turkey 517 T 487 487
252 Turkey 518 A 487 487
253 Turkey 519 T 487 487
254 Turkey 520 G 487 487
255 Turkey 521 G T 487 486 Val86Phe
256 Turkey 522 T 487 487
257 Turkey 523 T 487 487
258 Turkey 524 G 487 487
259 Turkey 525 A 487 487
260 Turkey 526 G 487 487
261 Turkey 527 C 487 487
262 Turkey 528 T C 487 486 Leu88Pro
263 Turkey 529 G 487 487
264 Turkey 530 G 487 487
265 Turkey 531 T 487 487
266 Turkey 532 A 487 487
267 Turkey 533 G 487 487
268 Turkey 534 C 487 487
269 Turkey 535 A 487 487
270 Turkey 536 G 487 487
271 Turkey 537 A 487 487
272 Turkey 538 A 487 487
273 Turkey 539 C 487 487
274 Turkey 540 T C 487 485 Leu92Pro
275 Turkey 541 C 487 487
276 Turkey 542 G 487 487
277 Turkey 543 A 487 487
278 Turkey 544 A 487 487
279 Turkey 545 G 487 487
280 Turkey 546 G 487 487
281 Turkey 547 C 487 487
282 Turkey 548 A 487 487
283 Turkey 549 T 487 487
284 Turkey 550 T 487 487
285 Turkey 551 C 487 487
286 Turkey 552 A 487 487
287 Turkey 553 G 487 487
288 Turkey 554 T 487 487
289 Turkey 555 A 487 487
290 Turkey 556 C 487 487
291 Turkey 557 G 487 487
292 Turkey 558 G 487 485
293 Turkey 559 T 487 485
294 Turkey 560 C 487 485
295 Turkey 561 G A 487 484 Arg99His
296 Turkey 562 T 487 484
297 Turkey 563 A 487 484
298 Turkey 564 G 487 484
299 Turkey 565 T 490 487
300 Turkey 566 G 490 487
301 Turkey 567 G 490 487
302 Turkey 568 T 490 487
303 Turkey 569 G 490 487
304 Turkey 570 A 490 487
305 Turkey 571 G 490 487
306 Turkey 572 A 490 487
307 Turkey 573 C 490 487
308 Turkey 574 A 490 487
309 Turkey 575 C 490 487
310 Turkey 576 T 490 487
311 Turkey 577 T 490 487
312 Turkey 578 G 490 487
313 Turkey 579 G 490 487
314 Turkey 580 T A 490 486 Gly105Gly
315 Turkey 581 G 490 487
316 Turkey 582 T 490 487
317 Turkey 583 C 490 487
318 Turkey 584 C 490 487
319 Turkey 585 T 490 487
320 Turkey 586 T 490 487
321 Turkey 587 G 490 488
322 Turkey 588 T 490 488
323 Turkey 589 C 490 488
324 Turkey 590 C 490 488
325 Turkey 591 C 490 490
326 Turkey 592 T 490 490
327 Turkey 593 C 490 490
328 Turkey 594 A 490 490
329 Turkey 595 T 490 490
330 Turkey 596 G 490 490
331 Turkey 597 T 490 490
332 Turkey 598 G 490 490
333 Turkey 599 G 490 490
334 Turkey 600 G 490 490
335 Turkey 601 C T 490 489 Gly112Gly
336 Turkey 602 G 490 490
337 Turkey 603 A 490 490
338 Turkey 604 A G 490 489 Glu113Glu
339 Turkey 605 A 490 490
340 Turkey 606 T C 490 489 Ile114Thr
341 Turkey 607 A 490 490
342 Turkey 608 C 490 490
343 Turkey 609 C 490 490
344 Turkey 610 A 490 490
345 Turkey 611 G 490 490
346 Turkey 612 T 490 490
347 Turkey 613 G 490 489
348 Turkey 614 G A 490 488 Ala117Thr
349 Turkey 615 C 490 489
350 Turkey 616 T 490 489
351 Turkey 617 T 490 489
352 Turkey 618 A 490 489
353 Turkey 619 C 490 489
354 Turkey 620 C A 490 488 Arg119Ser
355 Turkey 621 G 490 489
356 Turkey 622 C 490 489
357 Turkey 623 A 490 489
358 Turkey 624 A 490 490
359 Turkey 625 G 489 489
360 Turkey 626 G 489 489
361 Turkey 627 T 489 489
362 Turkey 628 T 489 489
363 Turkey 629 C 489 489
364 Turkey 630 T 489 489
365 Turkey 631 T 489 489
366 Turkey 632 C 489 489
367 Turkey 633 T 489 489
368 Turkey 634 T 489 489
369 Turkey 635 C 489 489
370 Turkey 636 G 489 489
371 Turkey 637 T 489 489
372 Turkey 638 A 489 489
373 Turkey 639 A 489 489
374 Turkey 640 G 489 489
375 Turkey 641 A 489 489
376 Turkey 642 A 489 489
377 Turkey 643 C 489 489
378 Turkey 644 G 489 489
379 Turkey 645 G 489 489
380 Turkey 646 T 489 489
381 Turkey 647 A 489 489
382 Turkey 648 A 489 489
383 Turkey 649 T 489 488
384 Turkey 650 A 489 488
385 Turkey 651 A 489 488
386 Turkey 652 A 489 488
387 Turkey 653 G 489 488
388 Turkey 654 G 489 488
389 Turkey 655 A 489 488
390 Turkey 656 G 489 488
391 Turkey 657 C 489 488
392 Turkey 658 T 489 488
393 Turkey 659 G 489 488
394 Turkey 660 G 489 488
395 Turkey 661 T 489 488
396 Turkey 662 G 489 488
397 Turkey 663 G 489 488
398 Turkey 664 C 489 488
399 Turkey 665 C 489 488
400 Turkey 666 A 489 488
401 Turkey 667 T 489 488
402 Turkey 668 A 489 488
403 Turkey 669 G 489 488
404 Turkey 670 T 489 488
405 Turkey 671 T 489 488
406 Turkey 672 A 489 488
407 Turkey 673 C 489 488
408 Turkey 674 G 489 488
409 Turkey 675 G 489 488
410 Turkey 676 C 489 488
411 Turkey 677 G 489 489
412 Turkey 678 C 489 489
413 Turkey 679 C 489 489
414 Turkey 680 G 489 489
415 Turkey 681 A 489 489
416 Turkey 682 T 489 489
417 Turkey 683 C T 489 488 Leu140Leu
418 Turkey 684 T 489 489
419 Turkey 685 A 489 489
420 Turkey 686 A 485 484
421 Turkey 687 A 485 484
422 Turkey 688 G 485 484
423 Turkey 689 T 485 484
424 Turkey 690 C 485 484
425 Turkey 691 A 485 484
426 Turkey 692 T 485 484
427 Turkey 693 T 485 484
428 Turkey 694 T 485 484
429 Turkey 695 G 485 485
430 Turkey 696 A 485 485
431 Turkey 697 C 485 485
432 Turkey 698 T 485 485
433 Turkey 699 T 485 485
434 Turkey 700 A 485 485
435 Turkey 701 G 485 485
436 Turkey 702 G 485 485
437 Turkey 703 C 485 485
438 Turkey 704 G 485 485
439 Turkey 705 A 485 485
440 Turkey 706 C 485 485
441 Turkey 707 G 485 485
442 Turkey 708 A 485 485
443 Turkey 709 G 485 485
444 Turkey 710 C 485 485
445 Turkey 711 T 485 485
446 Turkey 712 T 485 485
447 Turkey 713 G 483 483
448 Turkey 714 G 483 483
449 Turkey 715 C 483 483
450 Turkey 716 A 483 483
451 Turkey 717 C 483 483
452 Turkey 718 T 483 483
453 Turkey 719 G 483 483
454 Turkey 720 A 483 483
455 Turkey 721 T C 483 482 Asp152Asp
456 Turkey 722 C 483 483
457 Turkey 723 C 483 483
458 Turkey 724 T 483 483
459 Turkey 725 T 483 483
460 Turkey 726 A 483 483
461 Turkey 727 T 483 483
462 Turkey 728 G 483 483
463 Turkey 729 A 483 483
464 Turkey 730 A 483 483
465 Turkey 731 G 483 483
466 Turkey 732 A 483 483
467 Turkey 733 T 483 483
468 Turkey 734 T 483 483
469 Turkey 735 T 483 483
470 Turkey 736 T 483 483
471 Turkey 737 C 483 483
472 Turkey 738 A 483 483
473 Turkey 739 A 482 482
474 Turkey 740 G 482 482
475 Turkey 741 A 482 482
476 Turkey 742 A 482 482
477 Turkey 743 A 482 482
478 Turkey 744 A 482 482
479 Turkey 745 C 482 482
480 Turkey 746 T 486 486
481 Turkey 747 G 486 486
482 Turkey 748 G 486 486
483 Turkey 749 A 486 486
484 Turkey 750 A 486 486
485 Turkey 751 C 486 486
486 Turkey 752 A 486 486
487 Turkey 753 C 486 486
488 Turkey 754 T 486 486
489 Turkey 755 A 486 486
490 Turkey 756 A 486 486
491 Turkey 757 A 486 486
492 Turkey 758 C 486 486
493 Turkey 759 A 486 486
494 Turkey 760 T 486 486
495 Turkey 761 A 486 486
496 Turkey 762 G 486 486
497 Turkey 763 C 486 486
498 Turkey 764 A 486 486
499 Turkey 765 G 486 486
500 Turkey 766 T 486 486
501 Turkey 767 G 486 486
502 Turkey 768 G 486 486
503 Turkey 769 T 486 486
504 Turkey 770 G 486 486
505 Turkey 771 T 486 486
506 Turkey 772 T 486 486
507 Turkey 773 A 486 486
508 Turkey 774 C 486 486
509 Turkey 775 C 486 486
510 Turkey 776 C 486 486
511 Turkey 777 G 486 486
512 Turkey 778 T 486 486
513 Turkey 779 G C 486 485 Glu172Gln
514 Turkey 780 A 486 486
515 Turkey 781 A 486 486
516 Turkey 782 C 486 486
517 Turkey 783 T 486 486
518 Turkey 784 C 486 486
519 Turkey 785 A 486 486
520 Turkey 786 T 486 486
521 Turkey 787 G 486 486
522 Turkey 788 C 486 486
523 Turkey 789 G 486 486
524 Turkey 790 T C 486 485 Arg175Arg
525 Turkey 791 G 486 485
526 Turkey 792 A 486 485
527 Turkey 793 G 486 485
528 Turkey 794 C 486 485
529 Turkey 795 T 486 486
530 Turkey 796 T 486 486
531 Turkey 797 A 486 486
532 Turkey 798 A 486 486
533 Turkey 799 C 486 486
534 Turkey 800 G 486 486
535 Turkey 801 G 486 486
536 Turkey 802 A 486 486
537 Turkey 803 G 486 486
538 Turkey 804 G 486 486
539 Turkey 805 G 486 486