National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                   1    
C   3                                        
D   27           1           1                
E   54     1 1         1                      
F   15                                        
G   66     1     3                   1   1    
H   21             1             1           3
I   9                                        
K   27                       1     2          
L   63         1     1   2                    
M   9               1                        
N   18                       1       1        
P   24                         1              
Q   21                           1            
R   30   2                                    
S   30         1         1                    
T   21               1                        
V   63         1                         7    
W   3                                        
Y   15                                       2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Sweden 266 A 1388 1388
1 Sweden 267 T 1388 1388
2 Sweden 268 G 1388 1388
3 Sweden 269 G 1388 1388
4 Sweden 270 A 1388 1388
5 Sweden 271 G 1388 1388
6 Sweden 272 A 1388 1388
7 Sweden 273 G 1388 1388
8 Sweden 274 C 1388 1388
9 Sweden 275 C 1388 1388
10 Sweden 276 T 1388 1388
11 Sweden 277 T 1388 1388
12 Sweden 278 G 1388 1388
13 Sweden 279 T 1388 1388
14 Sweden 280 C 1388 1388
15 Sweden 281 C 1388 1388
16 Sweden 282 C 1388 1388
17 Sweden 283 T 1388 1388
18 Sweden 284 G 1388 1388
19 Sweden 285 G 1388 1388
20 Sweden 286 T 1388 1388
21 Sweden 287 T 1388 1388
22 Sweden 288 T 1388 1388
23 Sweden 289 C 1388 1388
24 Sweden 290 A 1388 1388
25 Sweden 291 A 1388 1388
26 Sweden 292 C 1388 1388
27 Sweden 293 G 1388 1388
28 Sweden 294 A 1388 1388
29 Sweden 295 G 1388 1388
30 Sweden 296 A 1388 1388
31 Sweden 297 A 1388 1388
32 Sweden 298 A 1388 1388
33 Sweden 299 A 1388 1388
34 Sweden 300 C 1388 1388
35 Sweden 301 A 1388 1388
36 Sweden 302 C 1388 1388
37 Sweden 303 A 1388 1388
38 Sweden 304 C 1388 1388
39 Sweden 305 G 1388 1388
40 Sweden 306 T 1388 1388
41 Sweden 307 C 1388 1388
42 Sweden 308 C 1388 1388
43 Sweden 309 A 1388 1388
44 Sweden 310 A 1388 1388
45 Sweden 311 C A 1388 1387 Leu16Ile
46 Sweden 312 T 1388 1388
47 Sweden 313 C T 1388 1381 Leu16Leu
48 Sweden 314 A 1388 1388
49 Sweden 315 G 1388 1388
50 Sweden 316 T 1388 1388
51 Sweden 317 T 1388 1388
52 Sweden 318 T 1388 1388
53 Sweden 319 G 1388 1388
54 Sweden 320 C 1388 1388
55 Sweden 321 C 1388 1388
56 Sweden 322 T 1388 1388
57 Sweden 323 G 1388 1388
58 Sweden 324 T 1388 1388
59 Sweden 325 T 1388 1388
60 Sweden 326 T 1388 1388
61 Sweden 327 T 1388 1388
62 Sweden 328 A 1388 1388
63 Sweden 329 C 1388 1388
64 Sweden 330 A 1388 1388
65 Sweden 331 G 1388 1388
66 Sweden 332 G 1388 1388
67 Sweden 333 T 1388 1388
68 Sweden 334 T 1388 1388
69 Sweden 335 C T 1388 1384 Arg24Cys
70 Sweden 336 G 1388 1388
71 Sweden 337 C 1388 1388
72 Sweden 338 G 1388 1388
73 Sweden 339 A 1388 1388
74 Sweden 340 C 1388 1388
75 Sweden 341 G 1388 1388
76 Sweden 342 T 1388 1388
77 Sweden 343 G T 1388 1382 Val26Val
78 Sweden 344 C 1388 1388
79 Sweden 345 T 1388 1388
80 Sweden 346 C 1388 1388
81 Sweden 347 G 1388 1388
82 Sweden 348 T 1388 1388
83 Sweden 349 A 1388 1388
84 Sweden 350 C 1388 1388
85 Sweden 351 G 1388 1388
86 Sweden 352 T 1388 1388
87 Sweden 353 G 1388 1388
88 Sweden 354 G 1388 1388
89 Sweden 355 C T 1388 1381 Gly30Gly
90 Sweden 356 T 1388 1388
91 Sweden 357 T 1388 1388
92 Sweden 358 T 1388 1388
93 Sweden 359 G 1388 1388
94 Sweden 360 G 1388 1388
95 Sweden 361 A 1388 1388
96 Sweden 362 G 1388 1388
97 Sweden 363 A 1388 1388
98 Sweden 364 C 1388 1388
99 Sweden 365 T 1388 1388
100 Sweden 366 C T 1388 1386 Ser34Phe
101 Sweden 367 C 1388 1388
102 Sweden 368 G 1388 1388
103 Sweden 369 T 1388 1388
104 Sweden 370 G 1388 1388
105 Sweden 371 G 1388 1388
106 Sweden 372 A 1388 1388
107 Sweden 373 G 1388 1388
108 Sweden 374 G 1388 1388
109 Sweden 375 A 1388 1388
110 Sweden 376 G T 1388 1383 Glu37Asp
111 Sweden 377 G 1388 1388
112 Sweden 378 T 1388 1388
113 Sweden 379 C 1388 1388
114 Sweden 380 T 1388 1388
115 Sweden 381 T 1388 1388
116 Sweden 382 A 1388 1388
117 Sweden 383 T 1388 1388
118 Sweden 384 C 1388 1388
119 Sweden 385 A 1388 1388
120 Sweden 386 G 1388 1388
121 Sweden 387 A 1388 1388
122 Sweden 388 G 1388 1388
123 Sweden 389 G 1388 1388
124 Sweden 390 C 1388 1388
125 Sweden 391 A 1388 1388
126 Sweden 392 C T 1388 1386 Arg43Cys
127 Sweden 393 G 1388 1388
128 Sweden 394 T 1388 1388
129 Sweden 395 C 1388 1388
130 Sweden 396 A 1388 1388
131 Sweden 397 A 1388 1388
132 Sweden 398 C 1388 1388
133 Sweden 399 A 1388 1388
134 Sweden 400 T 1388 1388
135 Sweden 401 C 1388 1388
136 Sweden 402 T 1388 1388
137 Sweden 403 T 1388 1388
138 Sweden 404 A 1388 1388
139 Sweden 405 A G 1388 1387 Lys47Arg
140 Sweden 406 A 1388 1388
141 Sweden 407 G A 1388 1387 Asp48Asn
142 Sweden 408 A 1388 1388
143 Sweden 409 T 1388 1388
144 Sweden 410 G 1388 1388
145 Sweden 411 G 1388 1388
146 Sweden 412 C 1388 1388
147 Sweden 413 A 1388 1388
148 Sweden 414 C 1388 1388
149 Sweden 415 T 1388 1388
150 Sweden 416 T 1388 1388
151 Sweden 417 G 1388 1388
152 Sweden 418 T 1388 1388
153 Sweden 419 G 1388 1388
154 Sweden 420 G 1388 1388
155 Sweden 421 C T 1388 1387 Gly52Gly
156 Sweden 422 T 1388 1388
157 Sweden 423 T 1388 1388
158 Sweden 424 A 1388 1388
159 Sweden 425 G 1388 1388
160 Sweden 426 T 1388 1388
161 Sweden 427 A 1388 1388
162 Sweden 428 G 1388 1388
163 Sweden 429 A 1388 1388
164 Sweden 430 A 1388 1388
165 Sweden 431 G 1388 1388
166 Sweden 432 T 1388 1388
167 Sweden 433 T 1388 1388
168 Sweden 434 G 1388 1388
169 Sweden 435 A 1388 1388
170 Sweden 436 A 1388 1388
171 Sweden 437 A 1388 1388
172 Sweden 438 A G 1388 1385 Lys58Arg
173 Sweden 439 A 1388 1388
174 Sweden 440 G 1388 1388
175 Sweden 441 G 1388 1388
176 Sweden 442 C 1388 1388
177 Sweden 443 G 1388 1388
178 Sweden 444 T 1388 1388
179 Sweden 445 T C 1388 1256 Val60Val
180 Sweden 446 T 1388 1388
181 Sweden 447 T 1388 1388
182 Sweden 448 G 1388 1388
183 Sweden 449 C 1388 1388
184 Sweden 450 C 1388 1388
185 Sweden 451 T 1388 1388
186 Sweden 452 C 1388 1388
187 Sweden 453 A 1388 1388
188 Sweden 454 A 1388 1388
189 Sweden 455 C 1388 1388
190 Sweden 456 T 1388 1388
191 Sweden 457 T 1388 1388
192 Sweden 458 G 1388 1388
193 Sweden 459 A 1388 1388
194 Sweden 460 A 1388 1388
195 Sweden 461 C 1388 1388
196 Sweden 462 A 1388 1388
197 Sweden 463 G A 1388 1387 Gln66Gln
198 Sweden 464 C 1388 1388
199 Sweden 465 C 1388 1388
200 Sweden 466 C 1388 1388
201 Sweden 467 T 1388 1388
202 Sweden 468 A 1388 1388
203 Sweden 469 T C 1388 1383 Tyr68Tyr
204 Sweden 470 G 1388 1388
205 Sweden 471 T 1388 1388
206 Sweden 472 G 1388 1388
207 Sweden 473 T 1388 1388
208 Sweden 474 T 1388 1388
209 Sweden 475 C 1388 1388
210 Sweden 476 A 1388 1388
211 Sweden 477 T 1388 1388
212 Sweden 478 C 1388 1388
213 Sweden 479 A 1388 1388
214 Sweden 480 A 1388 1388
215 Sweden 481 A 1388 1388
216 Sweden 482 C 1388 1388
217 Sweden 483 G 1388 1388
218 Sweden 484 T 1388 1388
219 Sweden 485 T 1388 1388
220 Sweden 486 C 1388 1388
221 Sweden 487 G 1388 1388
222 Sweden 488 G 1388 1388
223 Sweden 489 A 1388 1388
224 Sweden 490 T 1388 1388
225 Sweden 491 G 1388 1388
226 Sweden 492 C 1388 1388
227 Sweden 493 T 1388 1388
228 Sweden 494 C 1388 1388
229 Sweden 495 G 1388 1388
230 Sweden 496 A 1388 1388
231 Sweden 497 A 1388 1388
232 Sweden 498 C 1388 1388
233 Sweden 499 T 1388 1388
234 Sweden 500 G 1388 1388
235 Sweden 501 C T 1388 1387 Ala79Val
236 Sweden 502 A 1388 1388
237 Sweden 503 C 1388 1388
238 Sweden 504 C 1388 1388
239 Sweden 505 T 1386 1386
240 Sweden 506 C T 1386 1385 His81Tyr
241 Sweden 507 A 1386 1386
242 Sweden 508 T 1386 1386
243 Sweden 509 G A 1386 1384 Gly82Ser
244 Sweden 510 G 1386 1386
245 Sweden 511 T 1386 1386
246 Sweden 512 C T 1386 1385 His83Tyr
247 Sweden 513 A 1386 1386
248 Sweden 514 T C 1386 1381 His83His
249 Sweden 515 G 1386 1386
250 Sweden 516 T 1386 1386
251 Sweden 517 T 1386 1386
252 Sweden 518 A 1386 1386
253 Sweden 519 T 1386 1386
254 Sweden 520 G T 1386 1385 Met85Ile
255 Sweden 521 G T 1386 1383 Val86Phe
256 Sweden 522 T 1386 1386
257 Sweden 523 T 1386 1386
258 Sweden 524 G 1386 1386
259 Sweden 525 A 1386 1386
260 Sweden 526 G 1386 1386
261 Sweden 527 C 1386 1386
262 Sweden 528 T 1386 1386
263 Sweden 529 G 1386 1386
264 Sweden 530 G 1386 1386
265 Sweden 531 T 1386 1386
266 Sweden 532 A G 1386 1385 Val89Val
267 Sweden 533 G 1386 1386
268 Sweden 534 C 1386 1386
269 Sweden 535 A 1386 1386
270 Sweden 536 G 1386 1386
271 Sweden 537 A 1386 1386
272 Sweden 538 A 1386 1386
273 Sweden 539 C T 1386 1383 Leu92Phe
274 Sweden 540 T 1386 1386
275 Sweden 541 C 1386 1386
276 Sweden 542 G 1386 1386
277 Sweden 543 A 1386 1386
278 Sweden 544 A 1386 1386
279 Sweden 545 G 1386 1386
280 Sweden 546 G 1386 1386
281 Sweden 547 C 1386 1386
282 Sweden 548 A 1386 1386
283 Sweden 549 T 1386 1386
284 Sweden 550 T 1386 1386
285 Sweden 551 C 1386 1386
286 Sweden 552 A 1386 1386
287 Sweden 553 G 1386 1386
288 Sweden 554 T 1386 1386
289 Sweden 555 A 1386 1386
290 Sweden 556 C 1386 1386
291 Sweden 557 G 1386 1386
292 Sweden 558 G 1386 1386
293 Sweden 559 T 1386 1386
294 Sweden 560 C 1386 1386
295 Sweden 561 G 1386 1386
296 Sweden 562 T 1386 1386
297 Sweden 563 A 1386 1386
298 Sweden 564 G 1386 1386
299 Sweden 565 T 1388 1388
300 Sweden 566 G 1388 1388
301 Sweden 567 G 1388 1388
302 Sweden 568 T 1388 1388
303 Sweden 569 G 1388 1388
304 Sweden 570 A 1388 1388
305 Sweden 571 G A 1388 1387 Glu102Glu
306 Sweden 572 A 1388 1388
307 Sweden 573 C 1388 1388
308 Sweden 574 A 1388 1388
309 Sweden 575 C 1388 1388
310 Sweden 576 T 1388 1388
311 Sweden 577 T 1388 1388
312 Sweden 578 G 1388 1388
313 Sweden 579 G 1388 1388
314 Sweden 580 T 1388 1388
315 Sweden 581 G 1388 1388
316 Sweden 582 T 1388 1388
317 Sweden 583 C T 1388 1386 Val106Val
318 Sweden 584 C 1388 1388
319 Sweden 585 T 1388 1388
320 Sweden 586 T 1388 1388
321 Sweden 587 G 1388 1388
322 Sweden 588 T 1388 1388
323 Sweden 589 C 1388 1388
324 Sweden 590 C 1388 1388
325 Sweden 591 C 1388 1388
326 Sweden 592 T 1388 1388
327 Sweden 593 C T 1388 1385 His110Tyr
328 Sweden 594 A 1388 1388
329 Sweden 595 T A 1388 1387 His110Gln
330 Sweden 596 G 1388 1388
331 Sweden 597 T 1388 1388
332 Sweden 598 G T 1388 1387 Val111Val
333 Sweden 599 G 1388 1388
334 Sweden 600 G A 1388 1387 Gly112Asp
335 Sweden 601 C 1388 1388
336 Sweden 602 G 1388 1388
337 Sweden 603 A 1388 1388
338 Sweden 604 A 1388 1388
339 Sweden 605 A 1388 1388
340 Sweden 606 T 1388 1388
341 Sweden 607 A 1388 1388
342 Sweden 608 C 1388 1388
343 Sweden 609 C 1388 1388
344 Sweden 610 A G 1388 1386 Pro115Pro
345 Sweden 611 G 1388 1388
346 Sweden 612 T 1388 1388
347 Sweden 613 G 1388 1388
348 Sweden 614 G 1388 1388
349 Sweden 615 C 1388 1388
350 Sweden 616 T 1388 1388
351 Sweden 617 T 1388 1388
352 Sweden 618 A 1388 1388
353 Sweden 619 C 1388 1388
354 Sweden 620 C 1388 1388
355 Sweden 621 G 1388 1388
356 Sweden 622 C 1388 1388
357 Sweden 623 A 1388 1388
358 Sweden 624 A 1388 1388
359 Sweden 625 G T 1388 1369 Lys120Asn
360 Sweden 626 G 1387 1387
361 Sweden 627 T 1387 1387
362 Sweden 628 T 1387 1387
363 Sweden 629 C 1387 1387
364 Sweden 630 T 1387 1387
365 Sweden 631 T 1387 1387
366 Sweden 632 C 1387 1387
367 Sweden 633 T 1387 1387
368 Sweden 634 T 1387 1387
369 Sweden 635 C 1387 1387
370 Sweden 636 G 1387 1387
371 Sweden 637 T 1387 1387
372 Sweden 638 A 1387 1387
373 Sweden 639 A 1387 1387
374 Sweden 640 G 1387 1387
375 Sweden 641 A 1387 1387
376 Sweden 642 A G 1387 1386 Asn126Ser
377 Sweden 643 C 1387 1387
378 Sweden 644 G 1387 1387
379 Sweden 645 G 1387 1387
380 Sweden 646 T 1387 1387
381 Sweden 647 A 1387 1387
382 Sweden 648 A 1387 1387
383 Sweden 649 T 1387 1387
384 Sweden 650 A 1387 1387
385 Sweden 651 A 1387 1387
386 Sweden 652 A 1387 1387
387 Sweden 653 G 1387 1387
388 Sweden 654 G 1387 1387
389 Sweden 655 A 1387 1387
390 Sweden 656 G 1387 1387
391 Sweden 657 C 1387 1387
392 Sweden 658 T 1387 1387
393 Sweden 659 G 1387 1387
394 Sweden 660 G 1387 1387
395 Sweden 661 T 1387 1387
396 Sweden 662 G 1387 1387
397 Sweden 663 G 1387 1387
398 Sweden 664 C 1387 1387
399 Sweden 665 C 1387 1387
400 Sweden 666 A 1387 1387
401 Sweden 667 T 1387 1387
402 Sweden 668 A 1387 1387
403 Sweden 669 G 1387 1387
404 Sweden 670 T 1387 1387
405 Sweden 671 T 1387 1387
406 Sweden 672 A 1387 1387
407 Sweden 673 C 1387 1387
408 Sweden 674 G 1387 1387
409 Sweden 675 G T 1387 1386 Gly137Val
410 Sweden 676 C 1387 1387
411 Sweden 677 G 1387 1387
412 Sweden 678 C 1387 1387
413 Sweden 679 C 1387 1387
414 Sweden 680 G 1387 1387
415 Sweden 681 A G 1387 1386 Asp139Gly
416 Sweden 682 T 1387 1387
417 Sweden 683 C T 1387 1385 Leu140Leu
418 Sweden 684 T 1387 1387
419 Sweden 685 A 1387 1387
420 Sweden 686 A 1362 1362
421 Sweden 687 A 1362 1362
422 Sweden 688 G 1362 1362
423 Sweden 689 T 1362 1362
424 Sweden 690 C T 1362 1361 Ser142Leu
425 Sweden 691 A 1362 1362
426 Sweden 692 T 1362 1362
427 Sweden 693 T 1362 1362
428 Sweden 694 T 1362 1362
429 Sweden 695 G 1362 1362
430 Sweden 696 A 1362 1362
431 Sweden 697 C 1362 1362
432 Sweden 698 T 1362 1362
433 Sweden 699 T 1362 1362
434 Sweden 700 A 1362 1362
435 Sweden 701 G 1362 1362
436 Sweden 702 G 1362 1362
437 Sweden 703 C T 1362 1357 Gly146Gly
438 Sweden 704 G 1362 1362
439 Sweden 705 A 1362 1362
440 Sweden 706 C 1362 1362
441 Sweden 707 G 1362 1362
442 Sweden 708 A 1362 1362
443 Sweden 709 G 1362 1362
444 Sweden 710 C 1362 1362
445 Sweden 711 T 1362 1362
446 Sweden 712 T 1362 1362
447 Sweden 713 G 1362 1362
448 Sweden 714 G 1362 1362
449 Sweden 715 C 1362 1362
450 Sweden 716 A 1362 1362
451 Sweden 717 C 1362 1362
452 Sweden 718 T 1362 1362
453 Sweden 719 G 1362 1362
454 Sweden 720 A 1362 1362
455 Sweden 721 T 1362 1362
456 Sweden 722 C 1362 1362
457 Sweden 723 C 1362 1362
458 Sweden 724 T 1362 1362
459 Sweden 725 T 1362 1362
460 Sweden 726 A 1362 1362
461 Sweden 727 T C 1362 1361 Tyr154Tyr
462 Sweden 728 G 1362 1362
463 Sweden 729 A 1362 1362
464 Sweden 730 A 1362 1362
465 Sweden 731 G 1362 1362
466 Sweden 732 A 1362 1362
467 Sweden 733 T 1362 1362
468 Sweden 734 T 1362 1362
469 Sweden 735 T 1362 1362
470 Sweden 736 T 1362 1362
471 Sweden 737 C 1362 1362
472 Sweden 738 A 1362 1362
473 Sweden 739 A 1362 1362
474 Sweden 740 G 1362 1362
475 Sweden 741 A 1362 1362
476 Sweden 742 A 1362 1362
477 Sweden 743 A 1362 1362
478 Sweden 744 A 1362 1362
479 Sweden 745 C 1362 1362
480 Sweden 746 T 1388 1388
481 Sweden 747 G 1388 1388
482 Sweden 748 G 1388 1388
483 Sweden 749 A 1388 1388
484 Sweden 750 A 1388 1388
485 Sweden 751 C T 1388 1387 Asn162Asn
486 Sweden 752 A 1388 1388
487 Sweden 753 C T 1388 1387 Thr163Ile
488 Sweden 754 T 1388 1388
489 Sweden 755 A 1388 1388
490 Sweden 756 A 1388 1388
491 Sweden 757 A 1388 1388
492 Sweden 758 C 1388 1388
493 Sweden 759 A 1388 1388
494 Sweden 760 T 1388 1388
495 Sweden 761 A 1388 1388
496 Sweden 762 G 1388 1388
497 Sweden 763 C 1388 1388
498 Sweden 764 A 1388 1388
499 Sweden 765 G 1388 1388
500 Sweden 766 T 1388 1388
501 Sweden 767 G 1388 1388
502 Sweden 768 G 1388 1388
503 Sweden 769 T 1388 1388
504 Sweden 770 G 1388 1388
505 Sweden 771 T 1388 1388
506 Sweden 772 T C,A 1388 1381 Val169Val-p.Val169Val
507 Sweden 773 A 1388 1388
508 Sweden 774 C 1388 1388
509 Sweden 775 C 1388 1388
510 Sweden 776 C 1388 1388
511 Sweden 777 G 1388 1388
512 Sweden 778 T 1388 1388
513 Sweden 779 G A 1388 1387 Glu172Lys
514 Sweden 780 A 1388 1388
515 Sweden 781 A 1388 1388
516 Sweden 782 C 1388 1388
517 Sweden 783 T 1388 1388
518 Sweden 784 C 1388 1388
519 Sweden 785 A 1388 1388
520 Sweden 786 T 1388 1388
521 Sweden 787 G 1388 1388
522 Sweden 788 C 1388 1388
523 Sweden 789 G 1388 1388
524 Sweden 790 T 1388 1388
525 Sweden 791 G 1388 1388
526 Sweden 792 A 1388 1388
527 Sweden 793 G 1388 1388
528 Sweden 794 C 1388 1388
529 Sweden 795 T 1388 1388
530 Sweden 796 T 1388 1388
531 Sweden 797 A 1388 1388
532 Sweden 798 A 1388 1388
533 Sweden 799 C 1388 1388
534 Sweden 800 G 1388 1388
535 Sweden 801 G 1388 1388
536 Sweden 802 A 1388 1388
537 Sweden 803 G 1388 1388
538 Sweden 804 G 1388 1388
539 Sweden 805 G 1388 1388