National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                        
C   3                                        
D   27                                        
E   54                                        
F   15                                        
G   66                                        
H   21             1                          
I   9                                        
K   27                                        
L   63                                        
M   9                                        
N   18                                        
P   24                                        
Q   21                                        
R   30                                        
S   30         1                              
T   21                                        
V   63               1                   1    
W   3                                        
Y   15                                       1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Slovakia 266 A 96 96
1 Slovakia 267 T 96 96
2 Slovakia 268 G 96 96
3 Slovakia 269 G 96 96
4 Slovakia 270 A 96 96
5 Slovakia 271 G 96 96
6 Slovakia 272 A 96 96
7 Slovakia 273 G 96 96
8 Slovakia 274 C 96 96
9 Slovakia 275 C 96 96
10 Slovakia 276 T 96 96
11 Slovakia 277 T 96 96
12 Slovakia 278 G 96 96
13 Slovakia 279 T 96 96
14 Slovakia 280 C 96 96
15 Slovakia 281 C 96 96
16 Slovakia 282 C 96 96
17 Slovakia 283 T 96 96
18 Slovakia 284 G 96 96
19 Slovakia 285 G 96 96
20 Slovakia 286 T 96 96
21 Slovakia 287 T 96 96
22 Slovakia 288 T 96 96
23 Slovakia 289 C 96 96
24 Slovakia 290 A 96 96
25 Slovakia 291 A 96 96
26 Slovakia 292 C 96 96
27 Slovakia 293 G 96 96
28 Slovakia 294 A 96 96
29 Slovakia 295 G 96 96
30 Slovakia 296 A 96 96
31 Slovakia 297 A 96 96
32 Slovakia 298 A 96 96
33 Slovakia 299 A 96 96
34 Slovakia 300 C 96 96
35 Slovakia 301 A 96 96
36 Slovakia 302 C 96 96
37 Slovakia 303 A 96 96
38 Slovakia 304 C 96 96
39 Slovakia 305 G 96 96
40 Slovakia 306 T 96 96
41 Slovakia 307 C 96 96
42 Slovakia 308 C 96 96
43 Slovakia 309 A 96 96
44 Slovakia 310 A 96 96
45 Slovakia 311 C 96 96
46 Slovakia 312 T 96 96
47 Slovakia 313 C 96 96
48 Slovakia 314 A 96 96
49 Slovakia 315 G 96 96
50 Slovakia 316 T 96 96
51 Slovakia 317 T 96 96
52 Slovakia 318 T 96 96
53 Slovakia 319 G 96 96
54 Slovakia 320 C 96 96
55 Slovakia 321 C 96 96
56 Slovakia 322 T 96 96
57 Slovakia 323 G 96 96
58 Slovakia 324 T 96 96
59 Slovakia 325 T 96 96
60 Slovakia 326 T 96 96
61 Slovakia 327 T 96 96
62 Slovakia 328 A 96 96
63 Slovakia 329 C 96 96
64 Slovakia 330 A 96 96
65 Slovakia 331 G 96 96
66 Slovakia 332 G 96 96
67 Slovakia 333 T 96 96
68 Slovakia 334 T 96 96
69 Slovakia 335 C 96 96
70 Slovakia 336 G 96 96
71 Slovakia 337 C 96 96
72 Slovakia 338 G 96 96
73 Slovakia 339 A 96 96
74 Slovakia 340 C 96 96
75 Slovakia 341 G 96 96
76 Slovakia 342 T 96 96
77 Slovakia 343 G 96 96
78 Slovakia 344 C 96 96
79 Slovakia 345 T 96 96
80 Slovakia 346 C 96 96
81 Slovakia 347 G A 96 95 Val28Ile
82 Slovakia 348 T 96 96
83 Slovakia 349 A 96 96
84 Slovakia 350 C 96 96
85 Slovakia 351 G 96 96
86 Slovakia 352 T 96 96
87 Slovakia 353 G 96 96
88 Slovakia 354 G 96 96
89 Slovakia 355 C 96 96
90 Slovakia 356 T 96 96
91 Slovakia 357 T 96 96
92 Slovakia 358 T 96 96
93 Slovakia 359 G 96 96
94 Slovakia 360 G 96 96
95 Slovakia 361 A 96 96
96 Slovakia 362 G 96 96
97 Slovakia 363 A 96 96
98 Slovakia 364 C 96 96
99 Slovakia 365 T 96 96
100 Slovakia 366 C T 96 95 Ser34Phe
101 Slovakia 367 C 96 96
102 Slovakia 368 G 96 96
103 Slovakia 369 T 96 96
104 Slovakia 370 G 96 96
105 Slovakia 371 G 96 96
106 Slovakia 372 A 96 96
107 Slovakia 373 G 96 96
108 Slovakia 374 G 96 96
109 Slovakia 375 A 96 96
110 Slovakia 376 G 96 96
111 Slovakia 377 G 96 96
112 Slovakia 378 T 96 96
113 Slovakia 379 C 96 96
114 Slovakia 380 T 96 96
115 Slovakia 381 T 96 96
116 Slovakia 382 A 96 96
117 Slovakia 383 T 96 96
118 Slovakia 384 C 96 96
119 Slovakia 385 A 96 96
120 Slovakia 386 G 96 96
121 Slovakia 387 A 96 96
122 Slovakia 388 G 96 96
123 Slovakia 389 G 96 96
124 Slovakia 390 C 96 96
125 Slovakia 391 A 96 96
126 Slovakia 392 C 96 96
127 Slovakia 393 G 96 96
128 Slovakia 394 T 96 96
129 Slovakia 395 C 96 96
130 Slovakia 396 A 96 96
131 Slovakia 397 A 96 96
132 Slovakia 398 C 96 96
133 Slovakia 399 A 96 96
134 Slovakia 400 T 96 96
135 Slovakia 401 C 96 96
136 Slovakia 402 T 96 96
137 Slovakia 403 T 96 96
138 Slovakia 404 A 96 96
139 Slovakia 405 A 96 96
140 Slovakia 406 A 96 96
141 Slovakia 407 G 96 96
142 Slovakia 408 A 96 96
143 Slovakia 409 T 96 96
144 Slovakia 410 G 96 96
145 Slovakia 411 G 96 96
146 Slovakia 412 C 96 96
147 Slovakia 413 A 96 96
148 Slovakia 414 C 96 96
149 Slovakia 415 T 96 96
150 Slovakia 416 T 96 96
151 Slovakia 417 G 96 96
152 Slovakia 418 T 96 96
153 Slovakia 419 G 96 96
154 Slovakia 420 G 96 96
155 Slovakia 421 C 96 96
156 Slovakia 422 T 96 96
157 Slovakia 423 T 96 96
158 Slovakia 424 A 96 96
159 Slovakia 425 G 96 96
160 Slovakia 426 T 96 96
161 Slovakia 427 A 96 96
162 Slovakia 428 G 96 96
163 Slovakia 429 A 96 96
164 Slovakia 430 A 96 96
165 Slovakia 431 G 96 96
166 Slovakia 432 T 96 96
167 Slovakia 433 T 96 96
168 Slovakia 434 G 96 96
169 Slovakia 435 A 96 96
170 Slovakia 436 A 96 96
171 Slovakia 437 A 96 96
172 Slovakia 438 A 96 96
173 Slovakia 439 A 96 96
174 Slovakia 440 G 96 96
175 Slovakia 441 G 96 96
176 Slovakia 442 C 96 96
177 Slovakia 443 G 96 96
178 Slovakia 444 T 96 96
179 Slovakia 445 T C 96 94 Val60Val
180 Slovakia 446 T 96 96
181 Slovakia 447 T 96 96
182 Slovakia 448 G 96 96
183 Slovakia 449 C 96 96
184 Slovakia 450 C 96 96
185 Slovakia 451 T 96 96
186 Slovakia 452 C 96 96
187 Slovakia 453 A 96 96
188 Slovakia 454 A 96 96
189 Slovakia 455 C 96 96
190 Slovakia 456 T 96 96
191 Slovakia 457 T 96 96
192 Slovakia 458 G 96 96
193 Slovakia 459 A 96 96
194 Slovakia 460 A 96 96
195 Slovakia 461 C 96 96
196 Slovakia 462 A 96 96
197 Slovakia 463 G 96 96
198 Slovakia 464 C 96 96
199 Slovakia 465 C 96 96
200 Slovakia 466 C 96 96
201 Slovakia 467 T 96 96
202 Slovakia 468 A 96 96
203 Slovakia 469 T 96 96
204 Slovakia 470 G 96 96
205 Slovakia 471 T 96 96
206 Slovakia 472 G 96 96
207 Slovakia 473 T 96 96
208 Slovakia 474 T 96 96
209 Slovakia 475 C 96 96
210 Slovakia 476 A 96 96
211 Slovakia 477 T 96 96
212 Slovakia 478 C 96 96
213 Slovakia 479 A 96 96
214 Slovakia 480 A 96 96
215 Slovakia 481 A 96 96
216 Slovakia 482 C 96 96
217 Slovakia 483 G 96 96
218 Slovakia 484 T 96 96
219 Slovakia 485 T 96 96
220 Slovakia 486 C 96 96
221 Slovakia 487 G 96 96
222 Slovakia 488 G 96 96
223 Slovakia 489 A 96 96
224 Slovakia 490 T 96 96
225 Slovakia 491 G 96 96
226 Slovakia 492 C 96 96
227 Slovakia 493 T 96 96
228 Slovakia 494 C 96 96
229 Slovakia 495 G 96 96
230 Slovakia 496 A 96 96
231 Slovakia 497 A 96 96
232 Slovakia 498 C 96 96
233 Slovakia 499 T 96 96
234 Slovakia 500 G 96 96
235 Slovakia 501 C 96 96
236 Slovakia 502 A 96 96
237 Slovakia 503 C 96 96
238 Slovakia 504 C 96 96
239 Slovakia 505 T 96 96
240 Slovakia 506 C 96 96
241 Slovakia 507 A 96 96
242 Slovakia 508 T 96 96
243 Slovakia 509 G 96 96
244 Slovakia 510 G 96 96
245 Slovakia 511 T 96 96
246 Slovakia 512 C 96 96
247 Slovakia 513 A 96 96
248 Slovakia 514 T C 96 95 His83His
249 Slovakia 515 G 96 96
250 Slovakia 516 T 96 96
251 Slovakia 517 T 96 96
252 Slovakia 518 A 96 96
253 Slovakia 519 T 96 96
254 Slovakia 520 G 96 96
255 Slovakia 521 G 96 96
256 Slovakia 522 T 96 96
257 Slovakia 523 T 96 96
258 Slovakia 524 G 96 96
259 Slovakia 525 A 96 96
260 Slovakia 526 G 96 96
261 Slovakia 527 C 96 96
262 Slovakia 528 T 96 96
263 Slovakia 529 G 96 96
264 Slovakia 530 G 96 96
265 Slovakia 531 T 96 96
266 Slovakia 532 A 96 96
267 Slovakia 533 G 96 96
268 Slovakia 534 C 96 96
269 Slovakia 535 A 96 96
270 Slovakia 536 G 96 96
271 Slovakia 537 A 96 96
272 Slovakia 538 A 96 96
273 Slovakia 539 C 96 96
274 Slovakia 540 T 96 96
275 Slovakia 541 C 96 96
276 Slovakia 542 G 96 96
277 Slovakia 543 A 96 96
278 Slovakia 544 A 96 96
279 Slovakia 545 G 96 96
280 Slovakia 546 G 96 96
281 Slovakia 547 C 96 96
282 Slovakia 548 A 96 96
283 Slovakia 549 T 96 96
284 Slovakia 550 T 96 96
285 Slovakia 551 C 96 96
286 Slovakia 552 A 96 96
287 Slovakia 553 G 96 96
288 Slovakia 554 T 96 96
289 Slovakia 555 A 96 96
290 Slovakia 556 C T 96 95 Tyr97Tyr
291 Slovakia 557 G 96 96
292 Slovakia 558 G 96 96
293 Slovakia 559 T 96 96
294 Slovakia 560 C 96 96
295 Slovakia 561 G 96 96
296 Slovakia 562 T 96 96
297 Slovakia 563 A 96 96
298 Slovakia 564 G 96 96
299 Slovakia 565 T 96 96
300 Slovakia 566 G 96 96
301 Slovakia 567 G 96 96
302 Slovakia 568 T 96 96
303 Slovakia 569 G 96 96
304 Slovakia 570 A 96 96
305 Slovakia 571 G 96 96
306 Slovakia 572 A 96 96
307 Slovakia 573 C 96 96
308 Slovakia 574 A 96 96
309 Slovakia 575 C 96 96
310 Slovakia 576 T 96 96
311 Slovakia 577 T 96 96
312 Slovakia 578 G 96 96
313 Slovakia 579 G 96 96
314 Slovakia 580 T 96 96
315 Slovakia 581 G 96 96
316 Slovakia 582 T 96 96
317 Slovakia 583 C 96 96
318 Slovakia 584 C 96 96
319 Slovakia 585 T 96 96
320 Slovakia 586 T 96 96
321 Slovakia 587 G 96 96
322 Slovakia 588 T 96 96
323 Slovakia 589 C 96 96
324 Slovakia 590 C 96 96
325 Slovakia 591 C 96 96
326 Slovakia 592 T 96 96
327 Slovakia 593 C 96 96
328 Slovakia 594 A 96 96
329 Slovakia 595 T 96 96
330 Slovakia 596 G 96 96
331 Slovakia 597 T 96 96
332 Slovakia 598 G 96 96
333 Slovakia 599 G 96 96
334 Slovakia 600 G 96 96
335 Slovakia 601 C 96 96
336 Slovakia 602 G 96 96
337 Slovakia 603 A 96 96
338 Slovakia 604 A 96 96
339 Slovakia 605 A 96 96
340 Slovakia 606 T 96 96
341 Slovakia 607 A 96 96
342 Slovakia 608 C 96 96
343 Slovakia 609 C 96 96
344 Slovakia 610 A 96 96
345 Slovakia 611 G 96 96
346 Slovakia 612 T 96 96
347 Slovakia 613 G 96 96
348 Slovakia 614 G 96 96
349 Slovakia 615 C 96 96
350 Slovakia 616 T 96 96
351 Slovakia 617 T 96 96
352 Slovakia 618 A 96 96
353 Slovakia 619 C 96 96
354 Slovakia 620 C 96 96
355 Slovakia 621 G 96 96
356 Slovakia 622 C 96 96
357 Slovakia 623 A 96 96
358 Slovakia 624 A 96 96
359 Slovakia 625 G 96 96
360 Slovakia 626 G 96 96
361 Slovakia 627 T 96 96
362 Slovakia 628 T 96 96
363 Slovakia 629 C 96 96
364 Slovakia 630 T 96 96
365 Slovakia 631 T 96 96
366 Slovakia 632 C 96 96
367 Slovakia 633 T 96 96
368 Slovakia 634 T 96 96
369 Slovakia 635 C 96 96
370 Slovakia 636 G 96 96
371 Slovakia 637 T 96 96
372 Slovakia 638 A 96 96
373 Slovakia 639 A 96 96
374 Slovakia 640 G 96 96
375 Slovakia 641 A 96 96
376 Slovakia 642 A 96 96
377 Slovakia 643 C 96 96
378 Slovakia 644 G 96 96
379 Slovakia 645 G 96 96
380 Slovakia 646 T 96 96
381 Slovakia 647 A 96 96
382 Slovakia 648 A 96 96
383 Slovakia 649 T 96 96
384 Slovakia 650 A 96 96
385 Slovakia 651 A 96 96
386 Slovakia 652 A 96 96
387 Slovakia 653 G 96 96
388 Slovakia 654 G 96 96
389 Slovakia 655 A 96 96
390 Slovakia 656 G 96 96
391 Slovakia 657 C 96 96
392 Slovakia 658 T 96 96
393 Slovakia 659 G 96 96
394 Slovakia 660 G 96 96
395 Slovakia 661 T 96 96
396 Slovakia 662 G 96 96
397 Slovakia 663 G 96 96
398 Slovakia 664 C 96 96
399 Slovakia 665 C 96 96
400 Slovakia 666 A 96 96
401 Slovakia 667 T 96 96
402 Slovakia 668 A 96 96
403 Slovakia 669 G 96 96
404 Slovakia 670 T 96 96
405 Slovakia 671 T 96 96
406 Slovakia 672 A 96 96
407 Slovakia 673 C 96 96
408 Slovakia 674 G 96 96
409 Slovakia 675 G 96 96
410 Slovakia 676 C 96 96
411 Slovakia 677 G 96 96
412 Slovakia 678 C 96 96
413 Slovakia 679 C 96 96
414 Slovakia 680 G 96 96
415 Slovakia 681 A 96 96
416 Slovakia 682 T 96 96
417 Slovakia 683 C 96 96
418 Slovakia 684 T 96 96
419 Slovakia 685 A 96 96
420 Slovakia 686 A 95 95
421 Slovakia 687 A 95 95
422 Slovakia 688 G 95 95
423 Slovakia 689 T 95 95
424 Slovakia 690 C 95 95
425 Slovakia 691 A 95 95
426 Slovakia 692 T 95 95
427 Slovakia 693 T 95 95
428 Slovakia 694 T 95 95
429 Slovakia 695 G 95 95
430 Slovakia 696 A 95 95
431 Slovakia 697 C 95 95
432 Slovakia 698 T 95 95
433 Slovakia 699 T 95 95
434 Slovakia 700 A 95 95
435 Slovakia 701 G 95 95
436 Slovakia 702 G 95 95
437 Slovakia 703 C 95 95
438 Slovakia 704 G 95 95
439 Slovakia 705 A 95 95
440 Slovakia 706 C 95 95
441 Slovakia 707 G 95 95
442 Slovakia 708 A 95 95
443 Slovakia 709 G 95 95
444 Slovakia 710 C 95 95
445 Slovakia 711 T 95 95
446 Slovakia 712 T 95 95
447 Slovakia 713 G 95 95
448 Slovakia 714 G 95 95
449 Slovakia 715 C 95 95
450 Slovakia 716 A 95 95
451 Slovakia 717 C 95 95
452 Slovakia 718 T 95 95
453 Slovakia 719 G 95 95
454 Slovakia 720 A 95 95
455 Slovakia 721 T 95 95
456 Slovakia 722 C 95 95
457 Slovakia 723 C 95 95
458 Slovakia 724 T 95 95
459 Slovakia 725 T 95 95
460 Slovakia 726 A 95 95
461 Slovakia 727 T 95 95
462 Slovakia 728 G 95 95
463 Slovakia 729 A 95 95
464 Slovakia 730 A 95 95
465 Slovakia 731 G 95 95
466 Slovakia 732 A 95 95
467 Slovakia 733 T 95 95
468 Slovakia 734 T 95 95
469 Slovakia 735 T 95 95
470 Slovakia 736 T 95 95
471 Slovakia 737 C 95 95
472 Slovakia 738 A 95 95
473 Slovakia 739 A 95 95
474 Slovakia 740 G 95 95
475 Slovakia 741 A 95 95
476 Slovakia 742 A 95 95
477 Slovakia 743 A 95 95
478 Slovakia 744 A 95 95
479 Slovakia 745 C 95 95
480 Slovakia 746 T 96 96
481 Slovakia 747 G 96 96
482 Slovakia 748 G 96 96
483 Slovakia 749 A 96 96
484 Slovakia 750 A 96 96
485 Slovakia 751 C 96 96
486 Slovakia 752 A 96 96
487 Slovakia 753 C 96 96
488 Slovakia 754 T 96 96
489 Slovakia 755 A 96 96
490 Slovakia 756 A 96 96
491 Slovakia 757 A 96 96
492 Slovakia 758 C 96 96
493 Slovakia 759 A 96 96
494 Slovakia 760 T 96 96
495 Slovakia 761 A 96 96
496 Slovakia 762 G 96 96
497 Slovakia 763 C 96 96
498 Slovakia 764 A 96 96
499 Slovakia 765 G 96 96
500 Slovakia 766 T 96 96
501 Slovakia 767 G 96 96
502 Slovakia 768 G 96 96
503 Slovakia 769 T 96 96
504 Slovakia 770 G 96 96
505 Slovakia 771 T 96 96
506 Slovakia 772 T 96 96
507 Slovakia 773 A 96 96
508 Slovakia 774 C 96 96
509 Slovakia 775 C 96 96
510 Slovakia 776 C 96 96
511 Slovakia 777 G 96 96
512 Slovakia 778 T 96 96
513 Slovakia 779 G 96 96
514 Slovakia 780 A 96 96
515 Slovakia 781 A 96 96
516 Slovakia 782 C 96 96
517 Slovakia 783 T 96 96
518 Slovakia 784 C 96 96
519 Slovakia 785 A 96 96
520 Slovakia 786 T 96 96
521 Slovakia 787 G 96 96
522 Slovakia 788 C 96 96
523 Slovakia 789 G 96 96
524 Slovakia 790 T 96 96
525 Slovakia 791 G 96 96
526 Slovakia 792 A 96 96
527 Slovakia 793 G 96 96
528 Slovakia 794 C 96 96
529 Slovakia 795 T 96 96
530 Slovakia 796 T 96 96
531 Slovakia 797 A 96 96
532 Slovakia 798 A 96 96
533 Slovakia 799 C 96 96
534 Slovakia 800 G 96 96
535 Slovakia 801 G 96 96
536 Slovakia 802 A 96 96
537 Slovakia 803 G 96 96
538 Slovakia 804 G 96 96
539 Slovakia 805 G 96 96