National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*                                              
-     540                                        
?                                              
A     21                                        
C     3                                        
D     27                                        
E     54 1                                      
F     15                                        
G     66                                        
H     21                                        
I     9                                        
K 1   27                                        
L     63               1   1                    
M     9                                        
N     18                                        
P     24                             1          
Q     21                                        
R     30   1                                    
S     30                                        
T     21                                        
V     63       1                                
W     3                                        
Y     15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Senegal 266 A 126 126
1 Senegal 267 T 126 126
2 Senegal 268 G 126 126
3 Senegal 269 G 126 126
4 Senegal 270 A 126 126
5 Senegal 271 G 126 126
6 Senegal 272 A 126 126
7 Senegal 273 G 126 126
8 Senegal 274 C 126 126
9 Senegal 275 C 126 126
10 Senegal 276 T 126 126
11 Senegal 277 T 126 126
12 Senegal 278 G 126 126
13 Senegal 279 T 126 126
14 Senegal 280 C 126 126
15 Senegal 281 C 126 126
16 Senegal 282 C 126 125
17 Senegal 283 T 126 125
18 Senegal 284 G 126 126
19 Senegal 285 G 126 126
20 Senegal 286 T 126 126
21 Senegal 287 T 126 126
22 Senegal 288 T 126 126
23 Senegal 289 C 126 126
24 Senegal 290 A 126 126
25 Senegal 291 A 126 126
26 Senegal 292 C 126 125
27 Senegal 293 G 126 125
28 Senegal 294 A 126 125
29 Senegal 295 G 126 125
30 Senegal 296 A 126 126
31 Senegal 297 A 126 126
32 Senegal 298 A 126 126
33 Senegal 299 A 126 126
34 Senegal 300 C 126 126
35 Senegal 301 A 126 126
36 Senegal 302 C 126 126
37 Senegal 303 A 126 126
38 Senegal 304 C 127 127
39 Senegal 305 G 127 127
40 Senegal 306 T 127 127
41 Senegal 307 C 127 127
42 Senegal 308 C 127 127
43 Senegal 309 A 127 127
44 Senegal 310 A 127 127
45 Senegal 311 C 127 127
46 Senegal 312 T 127 127
47 Senegal 313 C T 127 118 Leu16Leu
48 Senegal 314 A 128 128
49 Senegal 315 G 128 128
50 Senegal 316 T 129 129
51 Senegal 317 T 129 128
52 Senegal 318 T 129 127
53 Senegal 319 G 129 129
54 Senegal 320 C 130 130
55 Senegal 321 C G 130 128 Pro19Arg
56 Senegal 322 T 131 131
57 Senegal 323 G 131 131
58 Senegal 324 T 131 131
59 Senegal 325 T 131 130
60 Senegal 326 T 131 131
61 Senegal 327 T 131 131
62 Senegal 328 A 132 132
63 Senegal 329 C 132 132
64 Senegal 330 A 132 132
65 Senegal 331 G 134 134
66 Senegal 332 G 134 134
67 Senegal 333 T 134 134
68 Senegal 334 T 134 134
69 Senegal 335 C T 134 131 Arg24Cys
70 Senegal 336 G 134 134
71 Senegal 337 C 134 134
72 Senegal 338 G 134 134
73 Senegal 339 A 134 134
74 Senegal 340 C 134 134
75 Senegal 341 G 134 134
76 Senegal 342 T 134 134
77 Senegal 343 G 134 134
78 Senegal 344 C 134 134
79 Senegal 345 T 134 134
80 Senegal 346 C 134 134
81 Senegal 347 G 134 134
82 Senegal 348 T 134 134
83 Senegal 349 A 134 134
84 Senegal 350 C 134 134
85 Senegal 351 G 134 134
86 Senegal 352 T 134 134
87 Senegal 353 G 134 134
88 Senegal 354 G 134 134
89 Senegal 355 C 134 134
90 Senegal 356 T 134 134
91 Senegal 357 T 134 134
92 Senegal 358 T 134 134
93 Senegal 359 G 134 134
94 Senegal 360 G 134 134
95 Senegal 361 A 134 134
96 Senegal 362 G 134 134
97 Senegal 363 A 134 134
98 Senegal 364 C 134 134
99 Senegal 365 T 134 134
100 Senegal 366 C 134 134
101 Senegal 367 C 134 134
102 Senegal 368 G 134 134
103 Senegal 369 T 134 134
104 Senegal 370 G 134 134
105 Senegal 371 G 134 134
106 Senegal 372 A C 134 133 Glu36Ala
107 Senegal 373 G 134 134
108 Senegal 374 G 134 134
109 Senegal 375 A 134 134
110 Senegal 376 G 134 134
111 Senegal 377 G 134 134
112 Senegal 378 T 134 134
113 Senegal 379 C 134 134
114 Senegal 380 T 134 134
115 Senegal 381 T 134 134
116 Senegal 382 A 134 134
117 Senegal 383 T 134 134
118 Senegal 384 C 134 134
119 Senegal 385 A 134 134
120 Senegal 386 G 134 134
121 Senegal 387 A 134 134
122 Senegal 388 G 134 134
123 Senegal 389 G 134 134
124 Senegal 390 C 134 134
125 Senegal 391 A 134 134
126 Senegal 392 C 134 134
127 Senegal 393 G 134 134
128 Senegal 394 T 134 134
129 Senegal 395 C 134 134
130 Senegal 396 A 134 134
131 Senegal 397 A 134 134
132 Senegal 398 C 134 134
133 Senegal 399 A 134 134
134 Senegal 400 T 134 134
135 Senegal 401 C 134 134
136 Senegal 402 T 134 134
137 Senegal 403 T 134 134
138 Senegal 404 A T 134 133 Lys47*
139 Senegal 405 A 134 134
140 Senegal 406 A 134 134
141 Senegal 407 G 134 134
142 Senegal 408 A 134 134
143 Senegal 409 T 134 134
144 Senegal 410 G 134 134
145 Senegal 411 G 134 134
146 Senegal 412 C 134 134
147 Senegal 413 A 134 134
148 Senegal 414 C 134 134
149 Senegal 415 T 134 134
150 Senegal 416 T 134 134
151 Senegal 417 G 134 134
152 Senegal 418 T 134 134
153 Senegal 419 G 134 134
154 Senegal 420 G 134 134
155 Senegal 421 C 134 134
156 Senegal 422 T 134 134
157 Senegal 423 T 134 134
158 Senegal 424 A 134 134
159 Senegal 425 G 134 134
160 Senegal 426 T A 134 133 Val54Glu
161 Senegal 427 A 134 134
162 Senegal 428 G 134 133
163 Senegal 429 A 134 133
164 Senegal 430 A 134 133
165 Senegal 431 G 134 133
166 Senegal 432 T 134 133
167 Senegal 433 T 134 133
168 Senegal 434 G 134 133
169 Senegal 435 A 134 133
170 Senegal 436 A 134 133
171 Senegal 437 A 134 133
172 Senegal 438 A 134 133
173 Senegal 439 A 134 133
174 Senegal 440 G 134 133
175 Senegal 441 G 134 133
176 Senegal 442 C 134 133
177 Senegal 443 G 134 133
178 Senegal 444 T 134 133
179 Senegal 445 T 134 133
180 Senegal 446 T 134 133
181 Senegal 447 T 134 133
182 Senegal 448 G 134 133
183 Senegal 449 C 134 133
184 Senegal 450 C 134 133
185 Senegal 451 T 134 133
186 Senegal 452 C 134 133
187 Senegal 453 A 134 133
188 Senegal 454 A 134 133
189 Senegal 455 C 134 133
190 Senegal 456 T 134 133
191 Senegal 457 T 134 133
192 Senegal 458 G 134 134
193 Senegal 459 A 134 134
194 Senegal 460 A 134 134
195 Senegal 461 C 134 134
196 Senegal 462 A 134 134
197 Senegal 463 G 134 134
198 Senegal 464 C 134 134
199 Senegal 465 C 134 134
200 Senegal 466 C 134 134
201 Senegal 467 T 134 134
202 Senegal 468 A 134 134
203 Senegal 469 T 134 134
204 Senegal 470 G 134 134
205 Senegal 471 T 134 134
206 Senegal 472 G 134 133
207 Senegal 473 T 134 133
208 Senegal 474 T 134 133
209 Senegal 475 C 134 133
210 Senegal 476 A 134 133
211 Senegal 477 T 134 133
212 Senegal 478 C 134 133
213 Senegal 479 A 134 133
214 Senegal 480 A 134 133
215 Senegal 481 A 134 133
216 Senegal 482 C 134 133
217 Senegal 483 G 134 133
218 Senegal 484 T 134 133
219 Senegal 485 T 134 133
220 Senegal 486 C 134 133
221 Senegal 487 G 134 133
222 Senegal 488 G 134 133
223 Senegal 489 A 134 133
224 Senegal 490 T 134 133
225 Senegal 491 G 134 133
226 Senegal 492 C 134 133
227 Senegal 493 T 134 133
228 Senegal 494 C 134 133
229 Senegal 495 G 134 133
230 Senegal 496 A 134 133
231 Senegal 497 A 134 133
232 Senegal 498 C 134 133
233 Senegal 499 T 134 133
234 Senegal 500 G 134 133
235 Senegal 501 C 134 133
236 Senegal 502 A 134 133
237 Senegal 503 C 134 134
238 Senegal 504 C 134 134
239 Senegal 505 T 134 134
240 Senegal 506 C 134 134
241 Senegal 507 A 134 134
242 Senegal 508 T 134 134
243 Senegal 509 G 134 134
244 Senegal 510 G 134 134
245 Senegal 511 T 134 134
246 Senegal 512 C 134 134
247 Senegal 513 A 134 134
248 Senegal 514 T 134 134
249 Senegal 515 G 134 134
250 Senegal 516 T 134 134
251 Senegal 517 T 134 134
252 Senegal 518 A 134 134
253 Senegal 519 T 134 134
254 Senegal 520 G 134 134
255 Senegal 521 G 134 134
256 Senegal 522 T 134 134
257 Senegal 523 T 134 134
258 Senegal 524 G 134 134
259 Senegal 525 A 134 133
260 Senegal 526 G 134 134
261 Senegal 527 C 134 134
262 Senegal 528 T 134 134
263 Senegal 529 G 134 134
264 Senegal 530 G 134 134
265 Senegal 531 T 134 134
266 Senegal 532 A 134 134
267 Senegal 533 G 134 134
268 Senegal 534 C 134 134
269 Senegal 535 A 134 134
270 Senegal 536 G 134 134
271 Senegal 537 A 134 134
272 Senegal 538 A 134 134
273 Senegal 539 C 134 134
274 Senegal 540 T 134 134
275 Senegal 541 C 134 134
276 Senegal 542 G 134 134
277 Senegal 543 A 134 134
278 Senegal 544 A 134 134
279 Senegal 545 G 134 134
280 Senegal 546 G 134 134
281 Senegal 547 C 134 134
282 Senegal 548 A 134 134
283 Senegal 549 T 134 134
284 Senegal 550 T 134 134
285 Senegal 551 C 134 134
286 Senegal 552 A 134 134
287 Senegal 553 G 134 134
288 Senegal 554 T 134 134
289 Senegal 555 A 134 134
290 Senegal 556 C 134 134
291 Senegal 557 G 135 135
292 Senegal 558 G 135 135
293 Senegal 559 T 135 135
294 Senegal 560 C 135 135
295 Senegal 561 G 135 135
296 Senegal 562 T 135 135
297 Senegal 563 A 135 135
298 Senegal 564 G 135 135
299 Senegal 565 T 135 135
300 Senegal 566 G 135 135
301 Senegal 567 G 135 135
302 Senegal 568 T 135 135
303 Senegal 569 G 135 135
304 Senegal 570 A 135 135
305 Senegal 571 G 135 135
306 Senegal 572 A 135 135
307 Senegal 573 C 135 135
308 Senegal 574 A 135 135
309 Senegal 575 C 135 135
310 Senegal 576 T 135 135
311 Senegal 577 T 135 135
312 Senegal 578 G 135 135
313 Senegal 579 G 135 135
314 Senegal 580 T 135 135
315 Senegal 581 G 135 135
316 Senegal 582 T 135 135
317 Senegal 583 C 135 135
318 Senegal 584 C 135 135
319 Senegal 585 T 135 135
320 Senegal 586 T 135 135
321 Senegal 587 G 135 135
322 Senegal 588 T 135 135
323 Senegal 589 C 135 135
324 Senegal 590 C 135 135
325 Senegal 591 C 135 135
326 Senegal 592 T 135 135
327 Senegal 593 C 135 135
328 Senegal 594 A 135 135
329 Senegal 595 T 135 135
330 Senegal 596 G 135 135
331 Senegal 597 T 135 135
332 Senegal 598 G 135 135
333 Senegal 599 G 135 135
334 Senegal 600 G 135 135
335 Senegal 601 C 135 135
336 Senegal 602 G 135 135
337 Senegal 603 A 135 135
338 Senegal 604 A 135 135
339 Senegal 605 A 135 135
340 Senegal 606 T 135 135
341 Senegal 607 A 135 135
342 Senegal 608 C 135 135
343 Senegal 609 C 135 135
344 Senegal 610 A 135 135
345 Senegal 611 G 135 135
346 Senegal 612 T 135 135
347 Senegal 613 G 135 135
348 Senegal 614 G 135 135
349 Senegal 615 C 135 135
350 Senegal 616 T 135 135
351 Senegal 617 T 135 135
352 Senegal 618 A 135 135
353 Senegal 619 C 135 135
354 Senegal 620 C 135 135
355 Senegal 621 G 135 135
356 Senegal 622 C 135 135
357 Senegal 623 A 135 134
358 Senegal 624 A 135 134
359 Senegal 625 G 135 134
360 Senegal 626 G 135 134
361 Senegal 627 T 135 134
362 Senegal 628 T 135 134
363 Senegal 629 C A 135 133 Leu122Ile
364 Senegal 630 T 135 134
365 Senegal 631 T 135 134
366 Senegal 632 C 135 134
367 Senegal 633 T 135 134
368 Senegal 634 T 135 134
369 Senegal 635 C 135 134
370 Senegal 636 G 135 134
371 Senegal 637 T 135 134
372 Senegal 638 A 135 134
373 Senegal 639 A 135 134
374 Senegal 640 G 135 134
375 Senegal 641 A 135 134
376 Senegal 642 A 135 134
377 Senegal 643 C 135 134
378 Senegal 644 G 135 134
379 Senegal 645 G 135 134
380 Senegal 646 T 136 135
381 Senegal 647 A 136 135
382 Senegal 648 A 136 135
383 Senegal 649 T 136 135
384 Senegal 650 A 136 136
385 Senegal 651 A 136 136
386 Senegal 652 A 136 136
387 Senegal 653 G 136 136
388 Senegal 654 G 136 136
389 Senegal 655 A 136 136
390 Senegal 656 G 136 136
391 Senegal 657 C 136 136
392 Senegal 658 T 136 136
393 Senegal 659 G 136 136
394 Senegal 660 G 136 136
395 Senegal 661 T 136 136
396 Senegal 662 G 136 136
397 Senegal 663 G 136 136
398 Senegal 664 C 136 136
399 Senegal 665 C 136 136
400 Senegal 666 A 136 136
401 Senegal 667 T 136 136
402 Senegal 668 A 136 136
403 Senegal 669 G 136 136
404 Senegal 670 T 136 136
405 Senegal 671 T 136 136
406 Senegal 672 A 136 136
407 Senegal 673 C 136 136
408 Senegal 674 G 136 136
409 Senegal 675 G 136 136
410 Senegal 676 C 136 136
411 Senegal 677 G 136 136
412 Senegal 678 C 136 136
413 Senegal 679 C 136 136
414 Senegal 680 G 136 136
415 Senegal 681 A 136 136
416 Senegal 682 T 136 136
417 Senegal 683 C 136 136
418 Senegal 684 T 136 136
419 Senegal 685 A 136 136
420 Senegal 686 A 136 136
421 Senegal 687 A 136 136
422 Senegal 688 G 136 136
423 Senegal 689 T 136 136
424 Senegal 690 C 136 136
425 Senegal 691 A 136 136
426 Senegal 692 T 136 136
427 Senegal 693 T 136 136
428 Senegal 694 T 136 136
429 Senegal 695 G 136 136
430 Senegal 696 A 136 136
431 Senegal 697 C 136 136
432 Senegal 698 T 136 136
433 Senegal 699 T 136 136
434 Senegal 700 A 136 136
435 Senegal 701 G 136 136
436 Senegal 702 G 136 136
437 Senegal 703 C 136 136
438 Senegal 704 G 136 136
439 Senegal 705 A 136 136
440 Senegal 706 C 136 136
441 Senegal 707 G 136 136
442 Senegal 708 A 136 136
443 Senegal 709 G 136 136
444 Senegal 710 C 136 136
445 Senegal 711 T 136 136
446 Senegal 712 T 136 136
447 Senegal 713 G 136 136
448 Senegal 714 G 136 136
449 Senegal 715 C 136 136
450 Senegal 716 A 136 136
451 Senegal 717 C 136 136
452 Senegal 718 T 136 136
453 Senegal 719 G 136 136
454 Senegal 720 A 136 136
455 Senegal 721 T 136 136
456 Senegal 722 C 136 136
457 Senegal 723 C 136 136
458 Senegal 724 T 136 136
459 Senegal 725 T 136 136
460 Senegal 726 A 136 136
461 Senegal 727 T 136 136
462 Senegal 728 G 136 136
463 Senegal 729 A 136 136
464 Senegal 730 A 136 136
465 Senegal 731 G 136 136
466 Senegal 732 A 136 136
467 Senegal 733 T 136 136
468 Senegal 734 T 136 136
469 Senegal 735 T 136 136
470 Senegal 736 T 136 136
471 Senegal 737 C 136 136
472 Senegal 738 A 136 136
473 Senegal 739 A 136 136
474 Senegal 740 G 136 136
475 Senegal 741 A 136 136
476 Senegal 742 A 136 136
477 Senegal 743 A 136 136
478 Senegal 744 A 136 136
479 Senegal 745 C 136 136
480 Senegal 746 T 136 136
481 Senegal 747 G 136 136
482 Senegal 748 G 136 136
483 Senegal 749 A 136 136
484 Senegal 750 A 136 136
485 Senegal 751 C 136 136
486 Senegal 752 A 136 136
487 Senegal 753 C 136 136
488 Senegal 754 T 136 136
489 Senegal 755 A 136 136
490 Senegal 756 A 136 136
491 Senegal 757 A 136 136
492 Senegal 758 C 136 136
493 Senegal 759 A 136 136
494 Senegal 760 T 136 136
495 Senegal 761 A 136 136
496 Senegal 762 G 136 136
497 Senegal 763 C 136 136
498 Senegal 764 A 136 136
499 Senegal 765 G 136 136
500 Senegal 766 T 136 136
501 Senegal 767 G 136 136
502 Senegal 768 G 136 136
503 Senegal 769 T 136 136
504 Senegal 770 G 136 136
505 Senegal 771 T 136 136
506 Senegal 772 T 136 136
507 Senegal 773 A 136 136
508 Senegal 774 C 136 136
509 Senegal 775 C 136 136
510 Senegal 776 C 136 136
511 Senegal 777 G 136 136
512 Senegal 778 T 136 136
513 Senegal 779 G 136 136
514 Senegal 780 A 136 136
515 Senegal 781 A 136 136
516 Senegal 782 C 136 136
517 Senegal 783 T 136 136
518 Senegal 784 C 136 135
519 Senegal 785 A 136 135
520 Senegal 786 T 136 135
521 Senegal 787 G 136 135
522 Senegal 788 C 136 135
523 Senegal 789 G 136 135
524 Senegal 790 T 136 135
525 Senegal 791 G 136 135
526 Senegal 792 A 136 135
527 Senegal 793 G 136 136
528 Senegal 794 C 136 136
529 Senegal 795 T 136 136
530 Senegal 796 T 136 136
531 Senegal 797 A 136 136
532 Senegal 798 A 136 136
533 Senegal 799 C 136 136
534 Senegal 800 G 136 136
535 Senegal 801 G 136 136
536 Senegal 802 A 136 136
537 Senegal 803 G 136 136
538 Senegal 804 G 136 136
539 Senegal 805 G 136 136