National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                               1 1 1    
C   3                                        
D   27                                       1
E   54     3 2                                
F   15         1                              
G   66 1 3       5                       1    
H   21             2               1         2
I   9                                 1      
K   27       1         1     1                
L   63         1     1   7                    
M   9               1                        
N   18                       4                
P   24                         1     2        
Q   21             1             1            
R   30   2                         2          
S   30           1             1     4        
T   21               1                        
V   63 2       1     1     1             7    
W   3                                        
Y   15                                       1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Russia 266 A 1772 1772
1 Russia 267 T 1772 1772
2 Russia 268 G 1772 1772
3 Russia 269 G 1773 1773
4 Russia 270 A 1773 1773
5 Russia 271 G 1773 1773
6 Russia 272 A 1773 1773
7 Russia 273 G 1773 1773
8 Russia 274 C T 1773 1770 Ser3Ser
9 Russia 275 C 1773 1773
10 Russia 276 T 1774 1774
11 Russia 277 T 1774 1774
12 Russia 278 G 1774 1774
13 Russia 279 T 1774 1773
14 Russia 280 C 1774 1774
15 Russia 281 C 1775 1775
16 Russia 282 C 1775 1775
17 Russia 283 T 1775 1775
18 Russia 284 G 1775 1775
19 Russia 285 G 1775 1775
20 Russia 286 T C 1775 1774 Gly7Gly
21 Russia 287 T 1775 1775
22 Russia 288 T 1775 1775
23 Russia 289 C 1775 1775
24 Russia 290 A 1775 1775
25 Russia 291 A 1775 1775
26 Russia 292 C 1775 1775
27 Russia 293 G 1775 1775
28 Russia 294 A 1775 1775
29 Russia 295 G 1775 1775
30 Russia 296 A G 1775 1774 Lys11Glu
31 Russia 297 A 1775 1775
32 Russia 298 A 1775 1775
33 Russia 299 A 1775 1775
34 Russia 300 C 1775 1775
35 Russia 301 A 1776 1775
36 Russia 302 C 1776 1776
37 Russia 303 A 1777 1777
38 Russia 304 C 1777 1777
39 Russia 305 G 1777 1777
40 Russia 306 T 1777 1777
41 Russia 307 C 1777 1777
42 Russia 308 C 1777 1777
43 Russia 309 A 1777 1777
44 Russia 310 A 1777 1777
45 Russia 311 C 1777 1777
46 Russia 312 T 1777 1777
47 Russia 313 C T 1780 1771 Leu16Leu
48 Russia 314 A 1781 1781
49 Russia 315 G 1781 1781
50 Russia 316 T 1786 1786
51 Russia 317 T 1791 1791
52 Russia 318 T 1791 1790
53 Russia 319 G 1792 1791
54 Russia 320 C 1792 1791
55 Russia 321 C 1792 1791
56 Russia 322 T 1792 1791
57 Russia 323 G 1792 1791
58 Russia 324 T 1792 1791
59 Russia 325 T 1792 1791
60 Russia 326 T 1792 1791
61 Russia 327 T 1792 1791
62 Russia 328 A 1792 1790
63 Russia 329 C 1792 1790
64 Russia 330 A 1792 1789
65 Russia 331 G 1792 1789
66 Russia 332 G T 1792 1788 Val23Phe
67 Russia 333 T 1792 1789
68 Russia 334 T 1792 1789
69 Russia 335 C T 1792 1788 Arg24Cys
70 Russia 336 G 1792 1789
71 Russia 337 C T 1792 1786 Arg24Arg
72 Russia 338 G 1792 1789
73 Russia 339 A 1792 1787
74 Russia 340 C 1792 1787
75 Russia 341 G A 1792 1786 Val26Met
76 Russia 342 T 1792 1787
77 Russia 343 G 1809 1809
78 Russia 344 C 1809 1809
79 Russia 345 T 1809 1809
80 Russia 346 C T 1809 1805 Leu27Leu
81 Russia 347 G 1809 1809
82 Russia 348 T 1809 1809
83 Russia 349 A 1809 1809
84 Russia 350 C 1809 1809
85 Russia 351 G 1809 1809
86 Russia 352 T 1809 1809
87 Russia 353 G T 1809 1808 Gly30Cys
88 Russia 354 G C 1809 1808 Gly30Ala
89 Russia 355 C 1809 1809
90 Russia 356 T 1809 1809
91 Russia 357 T 1809 1809
92 Russia 358 T 1809 1808
93 Russia 359 G 1809 1809
94 Russia 360 G 1809 1809
95 Russia 361 A 1809 1809
96 Russia 362 G 1809 1809
97 Russia 363 A 1809 1809
98 Russia 364 C 1809 1809
99 Russia 365 T 1809 1809
100 Russia 366 C 1809 1809
101 Russia 367 C T 1809 1808 Ser34Ser
102 Russia 368 G 1809 1809
103 Russia 369 T 1809 1809
104 Russia 370 G A,T 1809 1800 Val35Val-p.Val35Val
105 Russia 371 G 1809 1809
106 Russia 372 A 1809 1809
107 Russia 373 G 1809 1809
108 Russia 374 G 1809 1809
109 Russia 375 A 1809 1809
110 Russia 376 G T,A 1809 1801 Glu37Asp-p.Glu37Glu
111 Russia 377 G 1809 1809
112 Russia 378 T C 1809 1808 Val38Ala
113 Russia 379 C A,T 1809 1803 Val38Val-p.Val38Val
114 Russia 380 T A 1809 1808 Leu39Ile
115 Russia 381 T 1809 1809
116 Russia 382 A 1809 1809
117 Russia 383 T 1809 1809
118 Russia 384 C 1809 1809
119 Russia 385 A G 1809 1808 Ser40Ser
120 Russia 386 G 1809 1809
121 Russia 387 A 1809 1809
122 Russia 388 G 1809 1809
123 Russia 389 G 1809 1809
124 Russia 390 C 1809 1809
125 Russia 391 A 1809 1809
126 Russia 392 C 1809 1809
127 Russia 393 G 1809 1809
128 Russia 394 T 1809 1809
129 Russia 395 C 1809 1809
130 Russia 396 A 1809 1809
131 Russia 397 A G 1809 1802 Gln44Gln
132 Russia 398 C T 1809 1808 His45Tyr
133 Russia 399 A G 1809 1808 His45Arg
134 Russia 400 T 1809 1809
135 Russia 401 C 1809 1809
136 Russia 402 T 1809 1809
137 Russia 403 T 1809 1809
138 Russia 404 A 1809 1809
139 Russia 405 A 1809 1809
140 Russia 406 A 1809 1809
141 Russia 407 G 1809 1809
142 Russia 408 A 1809 1809
143 Russia 409 T 1809 1809
144 Russia 410 G 1809 1809
145 Russia 411 G 1809 1809
146 Russia 412 C 1809 1809
147 Russia 413 A 1809 1809
148 Russia 414 C 1809 1809
149 Russia 415 T 1809 1809
150 Russia 416 T 1809 1809
151 Russia 417 G 1809 1809
152 Russia 418 T 1809 1809
153 Russia 419 G 1809 1809
154 Russia 420 G 1809 1809
155 Russia 421 C 1809 1809
156 Russia 422 T 1809 1809
157 Russia 423 T 1809 1809
158 Russia 424 A 1809 1809
159 Russia 425 G 1809 1809
160 Russia 426 T 1809 1809
161 Russia 427 A 1809 1809
162 Russia 428 G 1809 1809
163 Russia 429 A 1809 1809
164 Russia 430 A 1809 1809
165 Russia 431 G 1809 1809
166 Russia 432 T 1809 1809
167 Russia 433 T C 1809 1808 Val56Val
168 Russia 434 G 1809 1809
169 Russia 435 A 1809 1809
170 Russia 436 A 1809 1809
171 Russia 437 A 1809 1809
172 Russia 438 A 1809 1809
173 Russia 439 A 1809 1809
174 Russia 440 G T 1809 1808 Gly59Cys
175 Russia 441 G 1809 1809
176 Russia 442 C 1809 1809
177 Russia 443 G A 1809 1808 Val60Ile
178 Russia 444 T 1809 1809
179 Russia 445 T 1809 1809
180 Russia 446 T 1809 1809
181 Russia 447 T 1809 1809
182 Russia 448 G 1809 1809
183 Russia 449 C 1809 1809
184 Russia 450 C 1809 1809
185 Russia 451 T 1809 1809
186 Russia 452 C 1809 1809
187 Russia 453 A 1809 1809
188 Russia 454 A 1809 1809
189 Russia 455 C 1809 1809
190 Russia 456 T 1809 1809
191 Russia 457 T 1809 1809
192 Russia 458 G 1809 1809
193 Russia 459 A 1809 1809
194 Russia 460 A 1809 1809
195 Russia 461 C 1809 1809
196 Russia 462 A 1809 1809
197 Russia 463 G 1809 1809
198 Russia 464 C 1809 1809
199 Russia 465 C 1809 1809
200 Russia 466 C T 1809 1807 Pro67Pro
201 Russia 467 T 1809 1809
202 Russia 468 A 1809 1809
203 Russia 469 T 1809 1809
204 Russia 470 G 1809 1809
205 Russia 471 T 1809 1809
206 Russia 472 G 1809 1809
207 Russia 473 T 1809 1809
208 Russia 474 T 1809 1809
209 Russia 475 C T 1809 1805 Phe70Phe
210 Russia 476 A 1809 1809
211 Russia 477 T 1809 1809
212 Russia 478 C 1809 1809
213 Russia 479 A 1809 1809
214 Russia 480 A 1809 1809
215 Russia 481 A 1809 1809
216 Russia 482 C 1809 1809
217 Russia 483 G 1809 1809
218 Russia 484 T 1809 1809
219 Russia 485 T 1809 1809
220 Russia 486 C 1809 1809
221 Russia 487 G T 1809 1806 Ser74Ser
222 Russia 488 G 1809 1809
223 Russia 489 A 1809 1809
224 Russia 490 T 1809 1809
225 Russia 491 G 1809 1809
226 Russia 492 C T 1809 1808 Ala76Val
227 Russia 493 T 1809 1809
228 Russia 494 C 1809 1809
229 Russia 495 G 1809 1809
230 Russia 496 A 1809 1809
231 Russia 497 A 1809 1809
232 Russia 498 C 1809 1809
233 Russia 499 T 1809 1809
234 Russia 500 G 1809 1809
235 Russia 501 C 1809 1809
236 Russia 502 A 1809 1809
237 Russia 503 C T 1809 1806 Pro80Ser
238 Russia 504 C 1809 1809
239 Russia 505 T 1806 1806
240 Russia 506 C 1806 1806
241 Russia 507 A 1806 1806
242 Russia 508 T C 1806 1805 His81His
243 Russia 509 G 1806 1806
244 Russia 510 G 1806 1806
245 Russia 511 T 1806 1806
246 Russia 512 C 1806 1806
247 Russia 513 A 1806 1806
248 Russia 514 T C 1806 1805 His83His
249 Russia 515 G 1806 1806
250 Russia 516 T 1806 1806
251 Russia 517 T 1806 1806
252 Russia 518 A 1806 1806
253 Russia 519 T 1806 1806
254 Russia 520 G T 1806 1805 Met85Ile
255 Russia 521 G 1806 1806
256 Russia 522 T 1806 1806
257 Russia 523 T 1806 1806
258 Russia 524 G 1806 1806
259 Russia 525 A 1806 1806
260 Russia 526 G T,A 1806 1803 Glu87Asp-p.Glu87Glu
261 Russia 527 C T 1806 1804 Leu88Leu
262 Russia 528 T 1806 1806
263 Russia 529 G T 1806 1805 Leu88Leu
264 Russia 530 G 1806 1806
265 Russia 531 T 1806 1806
266 Russia 532 A 1806 1806
267 Russia 533 G 1806 1806
268 Russia 534 C 1806 1806
269 Russia 535 A 1806 1806
270 Russia 536 G 1806 1806
271 Russia 537 A 1806 1806
272 Russia 538 A 1806 1806
273 Russia 539 C T 1806 1802 Leu92Phe
274 Russia 540 T 1806 1806
275 Russia 541 C T 1806 1799 Leu92Leu
276 Russia 542 G 1806 1806
277 Russia 543 A 1806 1806
278 Russia 544 A 1806 1806
279 Russia 545 G 1806 1806
280 Russia 546 G 1806 1806
281 Russia 547 C 1806 1806
282 Russia 548 A 1806 1806
283 Russia 549 T C 1806 1805 Ile95Thr
284 Russia 550 T 1806 1806
285 Russia 551 C 1806 1806
286 Russia 552 A 1806 1806
287 Russia 553 G 1806 1806
288 Russia 554 T 1806 1806
289 Russia 555 A 1806 1806
290 Russia 556 C 1806 1806
291 Russia 557 G 1806 1806
292 Russia 558 G 1806 1806
293 Russia 559 T 1806 1806
294 Russia 560 C 1806 1806
295 Russia 561 G 1806 1806
296 Russia 562 T 1806 1806
297 Russia 563 A 1806 1806
298 Russia 564 G 1806 1806
299 Russia 565 T 1809 1809
300 Russia 566 G 1809 1809
301 Russia 567 G 1809 1809
302 Russia 568 T 1809 1809
303 Russia 569 G 1809 1809
304 Russia 570 A 1809 1809
305 Russia 571 G 1809 1809
306 Russia 572 A 1809 1809
307 Russia 573 C 1809 1809
308 Russia 574 A 1809 1809
309 Russia 575 C 1809 1809
310 Russia 576 T 1809 1809
311 Russia 577 T C 1809 1807 Leu104Leu
312 Russia 578 G 1809 1809
313 Russia 579 G 1809 1809
314 Russia 580 T 1809 1809
315 Russia 581 G 1809 1809
316 Russia 582 T 1809 1809
317 Russia 583 C T 1809 1805 Val106Val
318 Russia 584 C 1809 1809
319 Russia 585 T 1809 1809
320 Russia 586 T 1809 1809
321 Russia 587 G 1809 1809
322 Russia 588 T 1809 1809
323 Russia 589 C 1809 1809
324 Russia 590 C 1809 1809
325 Russia 591 C 1809 1809
326 Russia 592 T 1809 1809
327 Russia 593 C T 1809 1791 His110Tyr
328 Russia 594 A 1809 1809
329 Russia 595 T 1809 1809
330 Russia 596 G 1809 1809
331 Russia 597 T 1809 1809
332 Russia 598 G 1809 1809
333 Russia 599 G 1809 1809
334 Russia 600 G 1809 1809
335 Russia 601 C T 1809 1807 Gly112Gly
336 Russia 602 G 1809 1809
337 Russia 603 A 1809 1809
338 Russia 604 A 1809 1809
339 Russia 605 A 1809 1809
340 Russia 606 T 1809 1809
341 Russia 607 A 1809 1808
342 Russia 608 C 1809 1808
343 Russia 609 C 1809 1808
344 Russia 610 A 1809 1808
345 Russia 611 G 1809 1808
346 Russia 612 T 1809 1808
347 Russia 613 G 1809 1809
348 Russia 614 G T 1809 1808 Ala117Ser
349 Russia 615 C 1809 1809
350 Russia 616 T 1809 1809
351 Russia 617 T 1809 1809
352 Russia 618 A 1809 1809
353 Russia 619 C 1809 1809
354 Russia 620 C 1809 1809
355 Russia 621 G 1809 1809
356 Russia 622 C T 1809 1808 Arg119Arg
357 Russia 623 A 1809 1809
358 Russia 624 A 1809 1809
359 Russia 625 G T 1809 1808 Lys120Asn
360 Russia 626 G 1809 1809
361 Russia 627 T C 1809 1808 Val121Ala
362 Russia 628 T 1809 1809
363 Russia 629 C 1809 1809
364 Russia 630 T 1809 1809
365 Russia 631 T 1809 1809
366 Russia 632 C 1809 1809
367 Russia 633 T 1809 1809
368 Russia 634 T 1809 1809
369 Russia 635 C T 1809 1806 Arg124Cys
370 Russia 636 G 1809 1809
371 Russia 637 T 1809 1809
372 Russia 638 A 1809 1809
373 Russia 639 A 1809 1809
374 Russia 640 G 1809 1809
375 Russia 641 A 1809 1809
376 Russia 642 A 1809 1809
377 Russia 643 C T 1809 1807 Asn126Asn
378 Russia 644 G 1809 1809
379 Russia 645 G 1809 1809
380 Russia 646 T 1809 1809
381 Russia 647 A 1809 1809
382 Russia 648 A 1809 1809
383 Russia 649 T C 1809 1808 Asn128Asn
384 Russia 650 A 1809 1809
385 Russia 651 A 1809 1809
386 Russia 652 A 1809 1809
387 Russia 653 G 1809 1809
388 Russia 654 G 1809 1809
389 Russia 655 A 1809 1809
390 Russia 656 G 1809 1809
391 Russia 657 C 1809 1809
392 Russia 658 T 1809 1809
393 Russia 659 G 1809 1809
394 Russia 660 G 1809 1809
395 Russia 661 T 1809 1809
396 Russia 662 G 1809 1809
397 Russia 663 G 1808 1808
398 Russia 664 C T 1808 1801 Gly133Gly
399 Russia 665 C 1808 1808
400 Russia 666 A 1808 1808
401 Russia 667 T 1808 1808
402 Russia 668 A 1808 1808
403 Russia 669 G 1808 1808
404 Russia 670 T 1808 1808
405 Russia 671 T 1808 1808
406 Russia 672 A 1808 1808
407 Russia 673 C T 1808 1804 Tyr136Tyr
408 Russia 674 G 1808 1808
409 Russia 675 G T 1808 1807 Gly137Val
410 Russia 676 C 1808 1808
411 Russia 677 G A 1808 1806 Ala138Thr
412 Russia 678 C 1808 1808
413 Russia 679 C 1808 1808
414 Russia 680 G 1808 1808
415 Russia 681 A 1808 1808
416 Russia 682 T 1808 1808
417 Russia 683 C T 1808 1804 Leu140Leu
418 Russia 684 T 1808 1808
419 Russia 685 A 1808 1808
420 Russia 686 A 1803 1803
421 Russia 687 A 1803 1803
422 Russia 688 G 1803 1803
423 Russia 689 T C 1803 1802 Ser142Pro
424 Russia 690 C 1803 1803
425 Russia 691 A 1803 1803
426 Russia 692 T 1803 1803
427 Russia 693 T 1803 1803
428 Russia 694 T 1803 1803
429 Russia 695 G T 1803 1800 Asp144Tyr
430 Russia 696 A 1803 1803
431 Russia 697 C 1803 1803
432 Russia 698 T 1803 1803
433 Russia 699 T 1803 1803
434 Russia 700 A 1803 1803
435 Russia 701 G 1803 1803
436 Russia 702 G 1803 1803
437 Russia 703 C T 1803 1797 Gly146Gly
438 Russia 704 G 1803 1803
439 Russia 705 A 1803 1803
440 Russia 706 C 1803 1803
441 Russia 707 G 1803 1803
442 Russia 708 A 1803 1803
443 Russia 709 G 1803 1803
444 Russia 710 C 1803 1803
445 Russia 711 T 1803 1803
446 Russia 712 T 1803 1803
447 Russia 713 G T 1803 1802 Gly150Cys
448 Russia 714 G 1803 1803
449 Russia 715 C 1803 1803
450 Russia 716 A 1803 1803
451 Russia 717 C 1803 1803
452 Russia 718 T 1803 1803
453 Russia 719 G 1803 1803
454 Russia 720 A 1803 1803
455 Russia 721 T 1803 1803
456 Russia 722 C T 1803 1802 Pro153Ser
457 Russia 723 C 1804 1804
458 Russia 724 T 1804 1804
459 Russia 725 T 1804 1804
460 Russia 726 A 1804 1804
461 Russia 727 T 1804 1804
462 Russia 728 G 1804 1804
463 Russia 729 A 1804 1804
464 Russia 730 A C 1804 1801 Glu155Asp
465 Russia 731 G 1804 1804
466 Russia 732 A 1804 1804
467 Russia 733 T 1804 1804
468 Russia 734 T 1804 1804
469 Russia 735 T 1804 1804
470 Russia 736 T 1804 1804
471 Russia 737 C 1804 1804
472 Russia 738 A 1804 1804
473 Russia 739 A C 1804 1803 Gln158His
474 Russia 740 G 1804 1804
475 Russia 741 A 1804 1804
476 Russia 742 A 1804 1804
477 Russia 743 A 1804 1804
478 Russia 744 A 1804 1804
479 Russia 745 C T 1804 1802 Asn160Asn
480 Russia 746 T 1809 1809
481 Russia 747 G 1809 1809
482 Russia 748 G 1809 1809
483 Russia 749 A 1809 1809
484 Russia 750 A 1809 1809
485 Russia 751 C 1809 1809
486 Russia 752 A 1809 1809
487 Russia 753 C 1809 1809
488 Russia 754 T 1809 1809
489 Russia 755 A 1809 1809
490 Russia 756 A 1809 1809
491 Russia 757 A G 1809 1808 Lys164Lys
492 Russia 758 C 1809 1809
493 Russia 759 A 1809 1809
494 Russia 760 T 1809 1809
495 Russia 761 A G 1809 1808 Ser166Gly
496 Russia 762 G 1809 1809
497 Russia 763 C 1809 1809
498 Russia 764 A 1809 1809
499 Russia 765 G 1809 1809
500 Russia 766 T 1809 1809
501 Russia 767 G 1809 1809
502 Russia 768 G 1809 1809
503 Russia 769 T 1809 1809
504 Russia 770 G 1809 1809
505 Russia 771 T 1809 1809
506 Russia 772 T C 1809 1807 Val169Val
507 Russia 773 A 1809 1809
508 Russia 774 C T 1809 1808 Thr170Ile
509 Russia 775 C 1809 1809
510 Russia 776 C 1809 1809
511 Russia 777 G 1809 1809
512 Russia 778 T 1809 1809
513 Russia 779 G 1809 1809
514 Russia 780 A 1809 1809
515 Russia 781 A 1809 1809
516 Russia 782 C 1809 1809
517 Russia 783 T 1809 1809
518 Russia 784 C 1809 1809
519 Russia 785 A 1809 1809
520 Russia 786 T 1809 1809
521 Russia 787 G 1809 1809
522 Russia 788 C 1809 1809
523 Russia 789 G 1809 1809
524 Russia 790 T 1809 1809
525 Russia 791 G 1809 1809
526 Russia 792 A 1809 1809
527 Russia 793 G 1809 1809
528 Russia 794 C 1809 1809
529 Russia 795 T 1809 1809
530 Russia 796 T 1809 1809
531 Russia 797 A 1809 1809
532 Russia 798 A 1809 1809
533 Russia 799 C T 1809 1807 Asn178Asn
534 Russia 800 G 1809 1809
535 Russia 801 G 1809 1809
536 Russia 802 A G 1809 1808 Gly179Gly
537 Russia 803 G 1809 1809
538 Russia 804 G 1809 1809
539 Russia 805 G 1809 1809