National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21 1         1                            
C   3                                        
D   27                                        
E   54                 1                      
F   15                                        
G   66           1                   1        
H   21                                        
I   9                                        
K   27                                        
L   63                                        
M   9                                        
N   18                                        
P   24                                        
Q   21                   1                    
R   30                                        
S   30                                        
T   21                                        
V   63                   1                    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Pakistan 266 A 56 56
1 Pakistan 267 T 56 56
2 Pakistan 268 G 56 56
3 Pakistan 269 G 56 56
4 Pakistan 270 A 56 56
5 Pakistan 271 G 56 56
6 Pakistan 272 A 56 56
7 Pakistan 273 G 56 56
8 Pakistan 274 C 56 56
9 Pakistan 275 C 56 56
10 Pakistan 276 T 56 56
11 Pakistan 277 T 56 56
12 Pakistan 278 G 56 56
13 Pakistan 279 T 56 56
14 Pakistan 280 C 56 56
15 Pakistan 281 C 56 56
16 Pakistan 282 C 56 56
17 Pakistan 283 T 56 56
18 Pakistan 284 G 56 56
19 Pakistan 285 G 56 56
20 Pakistan 286 T 56 56
21 Pakistan 287 T 56 56
22 Pakistan 288 T 56 56
23 Pakistan 289 C 56 56
24 Pakistan 290 A 56 56
25 Pakistan 291 A 56 56
26 Pakistan 292 C 56 56
27 Pakistan 293 G 56 56
28 Pakistan 294 A 56 56
29 Pakistan 295 G 56 56
30 Pakistan 296 A 56 56
31 Pakistan 297 A 56 56
32 Pakistan 298 A 56 56
33 Pakistan 299 A 56 56
34 Pakistan 300 C 56 56
35 Pakistan 301 A 56 56
36 Pakistan 302 C 56 56
37 Pakistan 303 A 56 56
38 Pakistan 304 C 56 56
39 Pakistan 305 G 56 56
40 Pakistan 306 T 56 56
41 Pakistan 307 C 56 56
42 Pakistan 308 C 56 56
43 Pakistan 309 A 56 56
44 Pakistan 310 A 56 56
45 Pakistan 311 C 56 56
46 Pakistan 312 T 56 56
47 Pakistan 313 C 56 56
48 Pakistan 314 A 56 56
49 Pakistan 315 G 56 56
50 Pakistan 316 T 56 56
51 Pakistan 317 T 56 56
52 Pakistan 318 T 56 56
53 Pakistan 319 G 56 56
54 Pakistan 320 C 56 56
55 Pakistan 321 C 56 56
56 Pakistan 322 T 56 56
57 Pakistan 323 G 56 56
58 Pakistan 324 T 56 56
59 Pakistan 325 T 56 56
60 Pakistan 326 T 56 56
61 Pakistan 327 T 56 56
62 Pakistan 328 A 56 56
63 Pakistan 329 C 56 56
64 Pakistan 330 A 56 56
65 Pakistan 331 G 56 56
66 Pakistan 332 G 56 56
67 Pakistan 333 T 56 56
68 Pakistan 334 T 56 56
69 Pakistan 335 C 56 56
70 Pakistan 336 G 56 56
71 Pakistan 337 C 56 56
72 Pakistan 338 G 56 56
73 Pakistan 339 A 56 56
74 Pakistan 340 C 56 56
75 Pakistan 341 G 56 56
76 Pakistan 342 T 56 56
77 Pakistan 343 G 56 56
78 Pakistan 344 C 56 56
79 Pakistan 345 T 56 56
80 Pakistan 346 C 56 56
81 Pakistan 347 G 56 56
82 Pakistan 348 T 56 56
83 Pakistan 349 A 56 56
84 Pakistan 350 C 56 56
85 Pakistan 351 G 56 56
86 Pakistan 352 T 56 56
87 Pakistan 353 G 56 56
88 Pakistan 354 G 56 56
89 Pakistan 355 C T 56 55 Gly30Gly
90 Pakistan 356 T 56 56
91 Pakistan 357 T 56 56
92 Pakistan 358 T 56 56
93 Pakistan 359 G 56 56
94 Pakistan 360 G 56 56
95 Pakistan 361 A 56 56
96 Pakistan 362 G 56 56
97 Pakistan 363 A 56 56
98 Pakistan 364 C 56 56
99 Pakistan 365 T 56 56
100 Pakistan 366 C 56 56
101 Pakistan 367 C 56 56
102 Pakistan 368 G 56 56
103 Pakistan 369 T 56 56
104 Pakistan 370 G 56 56
105 Pakistan 371 G 56 56
106 Pakistan 372 A 56 56
107 Pakistan 373 G 56 56
108 Pakistan 374 G 56 56
109 Pakistan 375 A 56 56
110 Pakistan 376 G 56 56
111 Pakistan 377 G 56 56
112 Pakistan 378 T 56 56
113 Pakistan 379 C 56 56
114 Pakistan 380 T 56 56
115 Pakistan 381 T 56 56
116 Pakistan 382 A 56 56
117 Pakistan 383 T 56 56
118 Pakistan 384 C 56 56
119 Pakistan 385 A 56 56
120 Pakistan 386 G 56 56
121 Pakistan 387 A 56 56
122 Pakistan 388 G 56 56
123 Pakistan 389 G 56 56
124 Pakistan 390 C 56 56
125 Pakistan 391 A 56 56
126 Pakistan 392 C 56 56
127 Pakistan 393 G 56 56
128 Pakistan 394 T 56 56
129 Pakistan 395 C 56 56
130 Pakistan 396 A 56 56
131 Pakistan 397 A 56 56
132 Pakistan 398 C 56 56
133 Pakistan 399 A 56 56
134 Pakistan 400 T 56 56
135 Pakistan 401 C 56 56
136 Pakistan 402 T 56 56
137 Pakistan 403 T 56 56
138 Pakistan 404 A 56 56
139 Pakistan 405 A 56 56
140 Pakistan 406 A 56 56
141 Pakistan 407 G 56 56
142 Pakistan 408 A 56 56
143 Pakistan 409 T 56 56
144 Pakistan 410 G 56 56
145 Pakistan 411 G 56 56
146 Pakistan 412 C 56 56
147 Pakistan 413 A 56 56
148 Pakistan 414 C 56 56
149 Pakistan 415 T 56 56
150 Pakistan 416 T 56 56
151 Pakistan 417 G 56 56
152 Pakistan 418 T 56 56
153 Pakistan 419 G 56 56
154 Pakistan 420 G 56 56
155 Pakistan 421 C 56 56
156 Pakistan 422 T 56 56
157 Pakistan 423 T 56 56
158 Pakistan 424 A 56 56
159 Pakistan 425 G 56 56
160 Pakistan 426 T 56 56
161 Pakistan 427 A 56 56
162 Pakistan 428 G 56 56
163 Pakistan 429 A 56 56
164 Pakistan 430 A 56 56
165 Pakistan 431 G 56 56
166 Pakistan 432 T 56 56
167 Pakistan 433 T 56 56
168 Pakistan 434 G 56 56
169 Pakistan 435 A 56 56
170 Pakistan 436 A 56 56
171 Pakistan 437 A 56 56
172 Pakistan 438 A 56 56
173 Pakistan 439 A 56 56
174 Pakistan 440 G 56 56
175 Pakistan 441 G 56 56
176 Pakistan 442 C 56 56
177 Pakistan 443 G 56 56
178 Pakistan 444 T 56 56
179 Pakistan 445 T 56 56
180 Pakistan 446 T 56 56
181 Pakistan 447 T 56 56
182 Pakistan 448 G 56 56
183 Pakistan 449 C 56 56
184 Pakistan 450 C 56 56
185 Pakistan 451 T 56 56
186 Pakistan 452 C 56 56
187 Pakistan 453 A T 56 55 Gln63Leu
188 Pakistan 454 A 57 57
189 Pakistan 455 C 57 57
190 Pakistan 456 T 57 57
191 Pakistan 457 T 57 57
192 Pakistan 458 G A 57 56 Glu65Lys
193 Pakistan 459 A 57 57
194 Pakistan 460 A 57 57
195 Pakistan 461 C 57 57
196 Pakistan 462 A 57 57
197 Pakistan 463 G 57 57
198 Pakistan 464 C 57 57
199 Pakistan 465 C 57 57
200 Pakistan 466 C 57 57
201 Pakistan 467 T 57 57
202 Pakistan 468 A 57 57
203 Pakistan 469 T 57 57
204 Pakistan 470 G 57 57
205 Pakistan 471 T 57 57
206 Pakistan 472 G 57 57
207 Pakistan 473 T 57 57
208 Pakistan 474 T 57 57
209 Pakistan 475 C 57 57
210 Pakistan 476 A 57 57
211 Pakistan 477 T 57 57
212 Pakistan 478 C 57 57
213 Pakistan 479 A 57 57
214 Pakistan 480 A 57 57
215 Pakistan 481 A 57 57
216 Pakistan 482 C 57 57
217 Pakistan 483 G 57 57
218 Pakistan 484 T 57 57
219 Pakistan 485 T 59 59
220 Pakistan 486 C 59 59
221 Pakistan 487 G 59 59
222 Pakistan 488 G 59 59
223 Pakistan 489 A 59 59
224 Pakistan 490 T 59 59
225 Pakistan 491 G 59 59
226 Pakistan 492 C G 60 59 Ala76Gly
227 Pakistan 493 T C 60 59 Ala76Ala
228 Pakistan 494 C 60 60
229 Pakistan 495 G 60 60
230 Pakistan 496 A 60 60
231 Pakistan 497 A 60 60
232 Pakistan 498 C 60 60
233 Pakistan 499 T 60 60
234 Pakistan 500 G 60 60
235 Pakistan 501 C 60 60
236 Pakistan 502 A 60 60
237 Pakistan 503 C 60 60
238 Pakistan 504 C 60 60
239 Pakistan 505 T 60 60
240 Pakistan 506 C 60 60
241 Pakistan 507 A 60 60
242 Pakistan 508 T 60 60
243 Pakistan 509 G A 60 58 Gly82Ser
244 Pakistan 510 G 60 60
245 Pakistan 511 T 60 60
246 Pakistan 512 C 60 60
247 Pakistan 513 A 60 60
248 Pakistan 514 T 60 60
249 Pakistan 515 G 60 60
250 Pakistan 516 T 60 60
251 Pakistan 517 T 60 60
252 Pakistan 518 A 60 60
253 Pakistan 519 T 60 60
254 Pakistan 520 G 60 60
255 Pakistan 521 G 60 60
256 Pakistan 522 T 60 60
257 Pakistan 523 T 60 60
258 Pakistan 524 G 60 60
259 Pakistan 525 A 60 60
260 Pakistan 526 G 60 60
261 Pakistan 527 C 60 60
262 Pakistan 528 T 60 60
263 Pakistan 529 G 60 60
264 Pakistan 530 G 60 60
265 Pakistan 531 T 60 60
266 Pakistan 532 A 60 60
267 Pakistan 533 G 60 60
268 Pakistan 534 C 60 60
269 Pakistan 535 A 60 60
270 Pakistan 536 G 60 60
271 Pakistan 537 A 60 60
272 Pakistan 538 A 60 60
273 Pakistan 539 C 60 60
274 Pakistan 540 T 60 60
275 Pakistan 541 C 60 60
276 Pakistan 542 G 60 60
277 Pakistan 543 A 60 60
278 Pakistan 544 A 60 60
279 Pakistan 545 G 60 60
280 Pakistan 546 G 60 60
281 Pakistan 547 C 60 60
282 Pakistan 548 A 60 60
283 Pakistan 549 T 60 60
284 Pakistan 550 T 60 60
285 Pakistan 551 C 60 60
286 Pakistan 552 A 60 60
287 Pakistan 553 G 60 60
288 Pakistan 554 T 60 60
289 Pakistan 555 A 60 60
290 Pakistan 556 C 60 60
291 Pakistan 557 G 60 60
292 Pakistan 558 G 60 60
293 Pakistan 559 T 60 60
294 Pakistan 560 C 60 60
295 Pakistan 561 G 60 60
296 Pakistan 562 T 60 60
297 Pakistan 563 A 60 60
298 Pakistan 564 G 60 60
299 Pakistan 565 T 60 60
300 Pakistan 566 G 60 60
301 Pakistan 567 G 60 60
302 Pakistan 568 T 60 60
303 Pakistan 569 G 60 60
304 Pakistan 570 A 60 60
305 Pakistan 571 G 60 60
306 Pakistan 572 A 60 60
307 Pakistan 573 C 60 60
308 Pakistan 574 A 60 60
309 Pakistan 575 C 60 60
310 Pakistan 576 T 60 60
311 Pakistan 577 T 60 60
312 Pakistan 578 G 60 60
313 Pakistan 579 G 60 60
314 Pakistan 580 T 60 60
315 Pakistan 581 G 60 60
316 Pakistan 582 T 60 60
317 Pakistan 583 C 60 60
318 Pakistan 584 C 60 60
319 Pakistan 585 T 60 60
320 Pakistan 586 T 60 60
321 Pakistan 587 G 60 60
322 Pakistan 588 T 60 60
323 Pakistan 589 C 60 60
324 Pakistan 590 C 60 60
325 Pakistan 591 C 60 60
326 Pakistan 592 T 60 60
327 Pakistan 593 C 60 60
328 Pakistan 594 A 60 60
329 Pakistan 595 T 60 60
330 Pakistan 596 G 60 60
331 Pakistan 597 T 60 60
332 Pakistan 598 G 60 60
333 Pakistan 599 G 60 60
334 Pakistan 600 G 60 60
335 Pakistan 601 C 60 60
336 Pakistan 602 G 60 60
337 Pakistan 603 A 60 60
338 Pakistan 604 A 60 60
339 Pakistan 605 A 60 60
340 Pakistan 606 T 60 60
341 Pakistan 607 A 60 60
342 Pakistan 608 C 60 60
343 Pakistan 609 C 60 60
344 Pakistan 610 A 60 60
345 Pakistan 611 G T 60 59 Val116Leu
346 Pakistan 612 T 60 60
347 Pakistan 613 G 60 60
348 Pakistan 614 G 60 60
349 Pakistan 615 C 60 60
350 Pakistan 616 T 60 60
351 Pakistan 617 T 60 60
352 Pakistan 618 A 60 60
353 Pakistan 619 C 60 60
354 Pakistan 620 C 60 60
355 Pakistan 621 G 60 60
356 Pakistan 622 C 60 60
357 Pakistan 623 A 60 60
358 Pakistan 624 A 60 60
359 Pakistan 625 G 60 60
360 Pakistan 626 G 60 60
361 Pakistan 627 T 60 60
362 Pakistan 628 T 60 60
363 Pakistan 629 C 60 60
364 Pakistan 630 T 60 60
365 Pakistan 631 T 60 60
366 Pakistan 632 C 60 60
367 Pakistan 633 T 60 60
368 Pakistan 634 T 60 60
369 Pakistan 635 C 60 60
370 Pakistan 636 G 60 60
371 Pakistan 637 T 60 60
372 Pakistan 638 A 60 60
373 Pakistan 639 A 60 60
374 Pakistan 640 G 60 60
375 Pakistan 641 A 60 60
376 Pakistan 642 A 60 60
377 Pakistan 643 C 60 60
378 Pakistan 644 G 60 60
379 Pakistan 645 G 60 60
380 Pakistan 646 T 60 60
381 Pakistan 647 A 60 60
382 Pakistan 648 A 60 60
383 Pakistan 649 T 60 60
384 Pakistan 650 A 60 60
385 Pakistan 651 A 60 60
386 Pakistan 652 A 60 60
387 Pakistan 653 G 60 60
388 Pakistan 654 G 60 60
389 Pakistan 655 A 60 60
390 Pakistan 656 G 60 60
391 Pakistan 657 C 60 60
392 Pakistan 658 T 60 60
393 Pakistan 659 G 60 60
394 Pakistan 660 G 60 60
395 Pakistan 661 T 60 60
396 Pakistan 662 G 60 60
397 Pakistan 663 G 60 60
398 Pakistan 664 C 60 60
399 Pakistan 665 C 60 60
400 Pakistan 666 A 60 60
401 Pakistan 667 T 60 60
402 Pakistan 668 A 60 60
403 Pakistan 669 G 60 60
404 Pakistan 670 T 60 60
405 Pakistan 671 T 60 60
406 Pakistan 672 A 60 60
407 Pakistan 673 C 60 60
408 Pakistan 674 G 60 60
409 Pakistan 675 G 60 60
410 Pakistan 676 C 60 60
411 Pakistan 677 G 60 60
412 Pakistan 678 C 60 60
413 Pakistan 679 C 60 60
414 Pakistan 680 G 60 60
415 Pakistan 681 A 60 60
416 Pakistan 682 T 60 60
417 Pakistan 683 C 60 60
418 Pakistan 684 T 60 60
419 Pakistan 685 A 60 60
420 Pakistan 686 A 60 60
421 Pakistan 687 A 60 60
422 Pakistan 688 G 60 60
423 Pakistan 689 T 60 60
424 Pakistan 690 C 60 60
425 Pakistan 691 A 60 60
426 Pakistan 692 T 60 60
427 Pakistan 693 T 60 60
428 Pakistan 694 T 60 60
429 Pakistan 695 G 60 60
430 Pakistan 696 A 60 60
431 Pakistan 697 C 60 60
432 Pakistan 698 T 60 60
433 Pakistan 699 T 60 60
434 Pakistan 700 A 60 60
435 Pakistan 701 G 60 60
436 Pakistan 702 G 60 60
437 Pakistan 703 C 60 60
438 Pakistan 704 G 60 60
439 Pakistan 705 A 60 60
440 Pakistan 706 C 60 60
441 Pakistan 707 G 60 60
442 Pakistan 708 A 60 60
443 Pakistan 709 G 60 60
444 Pakistan 710 C 60 60
445 Pakistan 711 T 60 60
446 Pakistan 712 T 60 60
447 Pakistan 713 G 60 60
448 Pakistan 714 G 60 60
449 Pakistan 715 C 60 60
450 Pakistan 716 A 60 60
451 Pakistan 717 C 60 60
452 Pakistan 718 T 60 60
453 Pakistan 719 G 60 60
454 Pakistan 720 A 60 60
455 Pakistan 721 T 60 60
456 Pakistan 722 C 60 60
457 Pakistan 723 C 60 60
458 Pakistan 724 T 60 60
459 Pakistan 725 T 60 60
460 Pakistan 726 A 60 60
461 Pakistan 727 T 60 60
462 Pakistan 728 G 60 60
463 Pakistan 729 A 60 60
464 Pakistan 730 A 60 60
465 Pakistan 731 G 60 60
466 Pakistan 732 A 60 60
467 Pakistan 733 T 60 60
468 Pakistan 734 T 60 60
469 Pakistan 735 T 60 60
470 Pakistan 736 T 60 60
471 Pakistan 737 C 60 60
472 Pakistan 738 A 60 60
473 Pakistan 739 A 60 60
474 Pakistan 740 G 60 60
475 Pakistan 741 A 60 60
476 Pakistan 742 A 60 60
477 Pakistan 743 A 60 60
478 Pakistan 744 A 60 60
479 Pakistan 745 C 60 60
480 Pakistan 746 T 60 60
481 Pakistan 747 G 60 60
482 Pakistan 748 G 60 60
483 Pakistan 749 A 60 60
484 Pakistan 750 A 60 60
485 Pakistan 751 C 60 60
486 Pakistan 752 A 60 60
487 Pakistan 753 C 60 60
488 Pakistan 754 T 60 60
489 Pakistan 755 A 60 60
490 Pakistan 756 A 60 60
491 Pakistan 757 A 60 60
492 Pakistan 758 C 60 60
493 Pakistan 759 A 60 60
494 Pakistan 760 T 60 60
495 Pakistan 761 A 60 60
496 Pakistan 762 G 60 60
497 Pakistan 763 C 60 60
498 Pakistan 764 A 60 60
499 Pakistan 765 G 60 60
500 Pakistan 766 T 60 60
501 Pakistan 767 G 60 60
502 Pakistan 768 G 60 60
503 Pakistan 769 T 60 60
504 Pakistan 770 G 60 60
505 Pakistan 771 T 60 60
506 Pakistan 772 T 60 60
507 Pakistan 773 A 60 60
508 Pakistan 774 C 60 60
509 Pakistan 775 C 60 60
510 Pakistan 776 C 60 60
511 Pakistan 777 G 60 60
512 Pakistan 778 T 60 60
513 Pakistan 779 G 60 60
514 Pakistan 780 A 60 60
515 Pakistan 781 A 60 60
516 Pakistan 782 C 60 60
517 Pakistan 783 T 60 60
518 Pakistan 784 C 60 60
519 Pakistan 785 A 60 60
520 Pakistan 786 T 60 60
521 Pakistan 787 G 60 60
522 Pakistan 788 C 60 60
523 Pakistan 789 G 60 60
524 Pakistan 790 T 60 60
525 Pakistan 791 G 60 60
526 Pakistan 792 A 60 60
527 Pakistan 793 G 60 60
528 Pakistan 794 C 60 60
529 Pakistan 795 T 60 60
530 Pakistan 796 T 60 60
531 Pakistan 797 A 60 60
532 Pakistan 798 A 60 60
533 Pakistan 799 C 60 60
534 Pakistan 800 G 60 60
535 Pakistan 801 G 60 60
536 Pakistan 802 A 60 60
537 Pakistan 803 G 60 60
538 Pakistan 804 G 60 60
539 Pakistan 805 G 60 60